Crystal structure of the IL-10/IL-10R1 complex reveals a shared receptor binding site.

Interleukin 10 (IL-10) is a dimeric cytokine that plays a central role in suppressing inflammatory responses. These activities are dependent on the interaction of IL-10 with its high-affinity receptor (IL-10R1). This intermediate complex must subsequently recruit the low-affinity IL-10R2 chain before cell signaling can occur. Here we report the 2.9 A crystal structure of IL-10 bound to a soluble form of IL-10R1 (sIL-10R1). The complex consists of two IL-10s and four sIL-10R1 molecules. Several residues in the IL-10/sIL-10R1 interface are conserved in all IL-10 homologs and their receptors. The data suggests that formation of the active IL-10 signaling complex occurs by a novel molecular recognition paradigm where IL-10R1 and IL-10R2 both recognize the same binding site on IL-10.

[1]  Wei Wu,et al.  Identification and functional characterization of a second chain of the interleukin‐10 receptor complex , 1997, The EMBO journal.

[2]  Collaborative Computational,et al.  The CCP4 suite: programs for protein crystallography. , 1994, Acta crystallographica. Section D, Biological crystallography.

[3]  J. Thornton,et al.  PROCHECK: a program to check the stereochemical quality of protein structures , 1993 .

[4]  A. Brunger Free R value: a novel statistical quantity for assessing the accuracy of crystal structures. , 1992 .

[5]  A. Kossiakoff,et al.  The Structure and Activity of a Monomeric Interferon-γ:α-Chain Receptor Signaling Complex , 2001 .

[6]  A. Rashidbaigi,et al.  Radiation inactivation of human gamma-interferon: cellular activation requires two dimers. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[7]  J. Heath,et al.  Crystal structure of a cytokine‐binding region of gp130 , 1998, The EMBO journal.

[8]  R. Coffman,et al.  Interleukin-10 and the interleukin-10 receptor. , 2001, Annual review of immunology.

[9]  Jamila Louahed,et al.  Cloning and Characterization of IL-10-Related T Cell-Derived Inducible Factor (IL-TIF), a Novel Cytokine Structurally Related to IL-10 and Inducible by IL-91 , 2000, The Journal of Immunology.

[10]  K Cowtan,et al.  Miscellaneous algorithms for density modification. , 1998, Acta crystallographica. Section D, Biological crystallography.

[11]  M. Ultsch,et al.  Human growth hormone and extracellular domain of its receptor: crystal structure of the complex. , 1992, Science.

[12]  V. Biou,et al.  [31] Treatment of multiwavelength anomalous diffraction data as a special case of multiple isomorphous replacement. , 1997, Methods in enzymology.

[13]  S. Pestka,et al.  Identification of the Functional Interleukin-22 (IL-22) Receptor Complex , 2001, The Journal of Biological Chemistry.

[14]  Z. Otwinowski,et al.  [20] Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.

[15]  T. Mosmann,et al.  Isolation and expression of human cytokine synthesis inhibitory factor cDNA clones: homology to Epstein-Barr virus open reading frame BCRFI. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[16]  R. de Waal Malefyt,et al.  Expression cloning and characterization of a human IL-10 receptor. , 1994, Journal of immunology.

[17]  H. Fickenscher,et al.  Induction of a Novel Cellular Homolog of Interleukin-10, AK155, by Transformation of T Lymphocytes with Herpesvirus Saimiri , 2000, Journal of Virology.

[18]  J. Schneider-Mergener,et al.  Mapping of the interleukin‐10/interleukin‐10 receptor combining site , 1998, Protein science : a publication of the Protein Society.

[19]  W. Kabsch A solution for the best rotation to relate two sets of vectors , 1976 .

[20]  J. Navaza,et al.  AMoRe: an automated package for molecular replacement , 1994 .

[21]  A Wlodawer,et al.  Crystal structure of interleukin-10 reveals the functional dimer with an unexpected topological similarity to interferon gamma. , 1995, Structure.

[22]  D. Stuart,et al.  Crystal structure of the extracellular region of human tissue factor , 1994, Nature.

[23]  T. L. Nagabhushan,et al.  Design and Analysis of an Engineered Human Interleukin-10 Monomer* , 2000, The Journal of Biological Chemistry.

[24]  J. Renauld,et al.  Human interleukin-10-related T cell-derived inducible factor: molecular cloning and functional characterization as an hepatocyte-stimulating factor. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[25]  A. Mercer,et al.  A homolog of interleukin-10 is encoded by the poxvirus orf virus , 1997, Journal of virology.

[26]  A. Wlodawer,et al.  Crystal structure of human interleukin‐10 at 1.6 Å resolution and a model of a complex with its soluble receptor , 1996, Protein science : a publication of the Protein Society.

[27]  S. Pestka,et al.  Identification and sequence of an accessory factor required for activation of the human interferon γ receptor , 1994, Cell.

[28]  I. Wilson,et al.  Erythropoietin receptor activation by a ligand-induced conformation change. , 1999, Science.

[29]  T. Mosmann,et al.  Homology of cytokine synthesis inhibitory factor (IL-10) to the Epstein-Barr virus gene BCRFI. , 1990, Science.

[30]  Z. Su,et al.  The melanoma differentiation associated gene mda-7 suppresses cancer cell growth. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[31]  F. Winkler,et al.  Observation of an unexpected third receptor molecule in the crystal structure of human interferon-gamma receptor complex. , 2000, Structure.

[32]  Enrico A. Stura,et al.  Functional Mimicry of a Protein Hormone by a Peptide Agonist: The EPO Receptor Complex at 2.8 Å , 1996, Science.

[33]  S. Pestka,et al.  Human cytomegalovirus harbors its own unique IL-10 homolog (cmvIL-10). , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[34]  A T Brünger,et al.  Protein hydration observed by X-ray diffraction. Solvation properties of penicillopepsin and neuraminidase crystal structures. , 1994, Journal of molecular biology.

[35]  J. Bazan Shared architecture of hormone binding domains in type I and II interferon receptors , 1990, Cell.

[36]  S. Menon,et al.  Crystal structure of Epstein-Barr virus protein BCRF1, a homolog of cellular interleukin-10. , 1997, Journal of molecular biology.

[37]  D. Conklin,et al.  Interleukin 20 Discovery, Receptor Identification, and Role in Epidermal Function , 2001, Cell.

[38]  T. L. Nagabhushan,et al.  Crystal structure of interleukin 10 reveals an interferon gamma-like fold. , 1995, Biochemistry.

[39]  T. Clackson,et al.  A hot spot of binding energy in a hormone-receptor interface , 1995, Science.

[40]  Zemin Zhang,et al.  Interleukin (IL)-22, a Novel Human Cytokine That Signals through the Interferon Receptor-related Proteins CRF2–4 and IL-22R* , 2000, The Journal of Biological Chemistry.

[41]  I. Wilson,et al.  Crystallographic evidence for preformed dimers of erythropoietin receptor before ligand activation. , 1999, Science.

[42]  W. Windsor,et al.  Crystal structure of a complex between interferon-γ and its soluble high-affinity receptor , 1995, Nature.

[43]  J. Banchereau,et al.  The EBV IL-10 homologue is a selective agonist with impaired binding to the IL-10 receptor. , 1997, Journal of immunology.

[44]  Henry Tauber,et al.  Methods of Enzymology. , 1956 .

[45]  R J Read,et al.  Crystallography & NMR system: A new software suite for macromolecular structure determination. , 1998, Acta crystallographica. Section D, Biological crystallography.

[46]  S. Pestka,et al.  Cloning, expression and initial characterisation of interleukin-19 (IL-19), a novel homologue of human interleukin-10 (IL-10) , 2000, Genes and Immunity.

[47]  J. Bazan,et al.  Structural design and molecular evolution of a cytokine receptor superfamily. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[48]  S. Narula,et al.  Characterization of Recombinant Extracellular Domain of Human Interleukin-10 Receptor (*) , 1995, The Journal of Biological Chemistry.