Noise in biological circuits.
暂无分享,去创建一个
David K. Karig | Chris D Cox | David K Karig | Michael L Simpson | Michael S Allen | James M McCollum | Roy D Dar | John F Cooke | J. M. McCollum | D. Karig | C. D. Cox | R. D. Dar | J. F. Cooke | M. Simpson | M. Allen
[1] B. Ingalls,et al. Deterministic characterization of stochastic genetic circuits , 2007, Proceedings of the National Academy of Sciences.
[2] M. L. Simpson,et al. Nano-enabled synthetic biology , 2007, Molecular systems biology.
[3] L. Serrano,et al. Engineering stability in gene networks by autoregulation , 2000, Nature.
[4] Jeffrey W. Smith,et al. Stochastic Gene Expression in a Single Cell , .
[5] M. Delbrück. Statistical Fluctuations in Autocatalytic Reactions , 1940 .
[6] A. E. Hirsh,et al. Noise Minimization in Eukaryotic Gene Expression , 2004, PLoS biology.
[7] M. Thattai,et al. Intrinsic noise in gene regulatory networks , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[8] Jeff Hasty,et al. Monitoring dynamics of single-cell gene expression over multiple cell cycles , 2005, 2006 Bio Micro and Nanosystems Conference.
[9] Indrani Bose,et al. Noise characteristics of feed forward loops , 2004, Physical biology.
[10] Nagiza F. Samatova,et al. The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior , 2006, Comput. Biol. Chem..
[11] Anne E Carpenter,et al. Dynamic proteomics in individual human cells uncovers widespread cell-cycle dependence of nuclear proteins , 2006, Nature Methods.
[12] D. Gillespie. Approximate accelerated stochastic simulation of chemically reacting systems , 2001 .
[13] Michael A. Gibson,et al. Efficient Exact Stochastic Simulation of Chemical Systems with Many Species and Many Channels , 2000 .
[14] Farren J. Isaacs,et al. Phenotypic consequences of promoter-mediated transcriptional noise. , 2006, Molecular cell.
[15] H. McAdams,et al. Circuit simulation of genetic networks. , 1995, Science.
[16] J. Paulsson. Summing up the noise in gene networks , 2004, Nature.
[17] Simon V. Avery,et al. Microbial cell individuality and the underlying sources of heterogeneity , 2006, Nature Reviews Microbiology.
[18] Naama Brenner,et al. Genome-wide transcriptional plasticity underlies cellular adaptation to novel challenge , 2007, Molecular systems biology.
[19] Tianhai Tian,et al. A multi-scaled approach for simulating chemical reaction systems. , 2004, Progress in biophysics and molecular biology.
[20] M. Thattai,et al. Stochastic Gene Expression in Fluctuating Environments , 2004, Genetics.
[21] J. Raser,et al. Control of Stochasticity in Eukaryotic Gene Expression , 2004, Science.
[22] M. L. Simpson,et al. Gene network shaping of inherent noise spectra , 2006, Nature.
[23] M. L. Simpson,et al. Frequency domain chemical Langevin analysis of stochasticity in gene transcriptional regulation. , 2004, Journal of theoretical biology.
[24] C. Lumsden,et al. Stochastic Simulation of Coupled Reaction-Diffusion Processes , 1996 .
[25] Gregory D. Peterson,et al. Accelerating Gene Regulatory Network Modeling Using Grid-Based Simulation , 2004, Simul..
[26] P. R. ten Wolde,et al. Exact results for noise power spectra in linear biochemical reaction networks. , 2005, The Journal of chemical physics.
[27] Rajan P Kulkarni,et al. Tunability and Noise Dependence in Differentiation Dynamics , 2007, Science.
[28] D. A. Mcquarrie. Stochastic approach to chemical kinetics , 1967, Journal of Applied Probability.
[29] Linda R. Petzold,et al. Improved leap-size selection for accelerated stochastic simulation , 2003 .
[30] David McMillen,et al. Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks , 2004, BMC Bioinformatics.
[31] E. O’Shea,et al. Noise in protein expression scales with natural protein abundance , 2006, Nature Genetics.
[32] P. Swain,et al. Intrinsic and extrinsic contributions to stochasticity in gene expression , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[33] A. Arkin,et al. Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells. , 1998, Genetics.
[34] Chris D Cox,et al. Using noise to probe and characterize gene circuits , 2008, Proceedings of the National Academy of Sciences.
[35] Alex Groisman,et al. A microfluidic chemostat for experiments with bacterial and yeast cells , 2005, Nature Methods.
[36] Ertugrul M. Ozbudak,et al. Regulation of noise in the expression of a single gene , 2002, Nature Genetics.
[37] Xavier Darzacq,et al. Imaging gene expression in single living cells , 2004, Nature Reviews Molecular Cell Biology.
[38] A. Givan,et al. Flow Cytometry: First Principles , 1992 .
[39] M. L. Simpson,et al. Frequency domain analysis of noise in autoregulated gene circuits , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[40] Chris D Cox,et al. Analysis of noise in quorum sensing. , 2003, Omics : a journal of integrative biology.
[41] P. Swain,et al. Gene Regulation at the Single-Cell Level , 2005, Science.
[42] A. van Oudenaarden,et al. Noise Propagation in Gene Networks , 2005, Science.
[43] T. Ideker,et al. A new approach to decoding life: systems biology. , 2001, Annual review of genomics and human genetics.
[44] M. DELBRtrCK. THE BURST SIZE DISTRIBUTION IN THE GROWTH OF BACTERIAL VIRUSES ( BACTERIOPHAGES ) , 2022 .
[45] J. Derisi,et al. Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise , 2006, Nature.
[46] K. Burrage,et al. Binomial leap methods for simulating stochastic chemical kinetics. , 2004, The Journal of chemical physics.
[47] D. Volfson,et al. Origins of extrinsic variability in eukaryotic gene expression , 2006, Nature.
[48] Gregory D. Peterson,et al. Engineering in the biological substrate: information processing in genetic circuits , 2004, Proceedings of the IEEE.
[49] Nagiza F. Samatova,et al. Accelerating Exact Stochastic Simulation Using Reconfigurable Computing , 2005, ERSA.
[50] D. Gillespie. Exact Stochastic Simulation of Coupled Chemical Reactions , 1977 .
[51] Mads Kærn,et al. Noise in eukaryotic gene expression , 2003, Nature.
[52] M. L. Simpson,et al. Transient-mediated fate determination in a transcriptional circuit of HIV , 2007, Nature Genetics.
[53] Linda R Petzold,et al. The slow-scale stochastic simulation algorithm. , 2005, The Journal of chemical physics.
[54] D. Koshland,et al. Non-genetic individuality: chance in the single cell , 1976, Nature.
[55] Larry Lok. The need for speed in stochastic simulation , 2004, Nature Biotechnology.
[56] D. Gillespie. The chemical Langevin equation , 2000 .
[57] R. Milo,et al. Variability and memory of protein levels in human cells , 2006, Nature.
[58] C. Pesce,et al. Regulated cell-to-cell variation in a cell-fate decision system , 2005, Nature.
[59] T. Kepler,et al. Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations. , 2001, Biophysical journal.
[60] Hong Li,et al. Efficient formulation of the stochastic simulation algorithm for chemically reacting systems. , 2004, The Journal of chemical physics.
[61] Muruhan Rathinam,et al. Stiffness in stochastic chemically reacting systems: The implicit tau-leaping method , 2003 .
[62] Jared E. Toettcher,et al. Stochastic Gene Expression in a Lentiviral Positive-Feedback Loop: HIV-1 Tat Fluctuations Drive Phenotypic Diversity , 2005, Cell.
[63] M. L. Simpson,et al. Frequency domain analysis of noise in simple gene circuits. , 2006, Chaos.
[64] Lukasz Salwinski,et al. In silico simulation of biological network dynamics , 2004, Nature Biotechnology.