Active learning of constitutive relation from mesoscopic dynamics for macroscopic modeling of non-Newtonian flows

Abstract We simulate complex fluids by means of an on-the-fly coupling of the bulk rheology to the underlying microstructure dynamics. In particular, a continuum model of polymeric fluids is constructed without a pre-specified constitutive relation, but instead it is actively learned from mesoscopic simulations where the dynamics of polymer chains is explicitly computed. To couple the bulk rheology of polymeric fluids and the microscale dynamics of polymer chains, the continuum approach (based on the finite volume method) provides the transient flow field as inputs for the (mesoscopic) dissipative particle dynamics (DPD), and in turn DPD returns an effective constitutive relation to close the continuum equations. In this multiscale modeling procedure, we employ an active learning strategy based on Gaussian process regression (GPR) to minimize the number of expensive DPD simulations, where adaptively selected DPD simulations are performed only as necessary. Numerical experiments are carried out for flow past a circular cylinder of a non-Newtonian fluid, modeled at the mesoscopic level by bead-spring chains. The results show that only five DPD simulations are required to achieve an effective closure of the continuum equations at Reynolds number R e = 10 . Furthermore, when Re is increased to 100, only one additional DPD simulation is required for constructing an extended GPR-informed model closure. Compared to traditional message-passing multiscale approaches, applying an active learning scheme to multiscale modeling of non-Newtonian fluids can significantly increase the computational efficiency. Although the method demonstrated here obtains only a local viscosity from the polymer dynamics, it can be extended to other multiscale models of complex fluids whose macro-rheology is unknown.

[1]  Christopher W. Macosko,et al.  Rheology: Principles, Measurements, and Applications , 1994 .

[2]  Jerry Zhijian Yang,et al.  A generalized Irving-Kirkwood formula for the calculation of stress in molecular dynamics models. , 2012, The Journal of chemical physics.

[3]  Victor M. Calo,et al.  Multiscale Modeling of Blood Flow: Coupling Finite Elements with Smoothed Dissipative Particle Dynamics , 2013, ICCS.

[4]  R. Winkler,et al.  Multi-Particle Collision Dynamics -- a Particle-Based Mesoscale Simulation Approach to the Hydrodynamics of Complex Fluids , 2008, 0808.2157.

[5]  Andreas C. Damianou,et al.  Nonlinear information fusion algorithms for data-efficient multi-fidelity modelling , 2017, Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[6]  He Li,et al.  Two-component coarse-grained molecular-dynamics model for the human erythrocyte membrane. , 2012, Biophysical journal.

[7]  J. Padding,et al.  Dynamics and rheology of wormlike micelles emerging from particulate computer simulations. , 2008, The Journal of chemical physics.

[8]  G. Grest,et al.  Dynamics of entangled linear polymer melts: A molecular‐dynamics simulation , 1990 .

[9]  W G Noid,et al.  Perspective: Coarse-grained models for biomolecular systems. , 2013, The Journal of chemical physics.

[10]  Joel H. Ferziger,et al.  Computational methods for fluid dynamics , 1996 .

[11]  Zhen Li,et al.  Multiscale Universal Interface: A concurrent framework for coupling heterogeneous solvers , 2014, J. Comput. Phys..

[12]  George E. Karniadakis,et al.  Triple-decker: Interfacing atomistic-mesoscopic-continuum flow regimes , 2009, J. Comput. Phys..

[13]  Ronald G. Larson,et al.  Modeling the Rheology of Polymer Melts and Solutions , 2015 .

[14]  Robert C. Armstrong,et al.  Dynamics of polymeric liquids: Fluid mechanics , 1987 .

[15]  Y. Hassan,et al.  A comparative study of direct‐forcing immersed boundary‐lattice Boltzmann methods for stationary complex boundaries , 2011 .

[16]  J. Koelman,et al.  Simulating microscopic hydrodynamic phenomena with dissipative particle dynamics , 1992 .

[17]  Nenad Filipovic,et al.  A mesoscopic bridging scale method for fluids and coupling dissipative particle dynamics with continuum finite element method. , 2008, Computer methods in applied mechanics and engineering.

[18]  J. Kirkwood,et al.  The Statistical Mechanical Theory of Transport Processes. IV. The Equations of Hydrodynamics , 1950 .

[19]  C. Brooks Computer simulation of liquids , 1989 .

[20]  Marissa G. Saunders,et al.  Coarse-graining methods for computational biology. , 2013, Annual review of biophysics.

[21]  G. Karniadakis,et al.  Construction of dissipative particle dynamics models for complex fluids via the Mori-Zwanzig formulation. , 2014, Soft matter.

[22]  W. Mao,et al.  Mesoscale modeling: solving complex flows in biology and biotechnology. , 2013, Trends in biotechnology.

[23]  P. B. Warren,et al.  DISSIPATIVE PARTICLE DYNAMICS : BRIDGING THE GAP BETWEEN ATOMISTIC AND MESOSCOPIC SIMULATION , 1997 .

[24]  G. Karniadakis,et al.  Multi-fidelity modelling of mixed convection based on experimental correlations and numerical simulations , 2016, Journal of Fluid Mechanics.

[25]  Steve Plimpton,et al.  Fast parallel algorithms for short-range molecular dynamics , 1993 .

[26]  Marcel Crochet,et al.  Numerical Methods in Non-Newtonian Fluid Mechanics , 1983 .

[27]  J. Oldroyd On the formulation of rheological equations of state , 1950, Proceedings of the Royal Society of London. Series A. Mathematical and Physical Sciences.

[28]  Flavio Giannetti,et al.  First instability of the flow of shear-thinning and shear-thickening fluids past a circular cylinder , 2012, Journal of Fluid Mechanics.

[29]  Español,et al.  Hydrodynamics from dissipative particle dynamics. , 1995, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[30]  Hans Christian Öttinger,et al.  A detailed comparison of various FENE dumbbell models , 1997 .

[31]  R. Tanner,et al.  A new constitutive equation derived from network theory , 1977 .

[32]  Shi-aki Hyodo,et al.  Equation of motion for coarse-grained simulation based on microscopic description. , 2007, Physical review. E, Statistical, nonlinear, and soft matter physics.

[33]  George Em Karniadakis,et al.  Dissipative Particle Dynamics: Foundation, Evolution, Implementation, and Applications , 2017 .

[34]  G. Karniadakis,et al.  Model inversion via multi-fidelity Bayesian optimization: a new paradigm for parameter estimation in haemodynamics, and beyond , 2016, Journal of The Royal Society Interface.

[35]  George Em Karniadakis,et al.  A spectral vanishing viscosity method for stabilizing viscoelastic flows , 2003 .

[36]  R. P. Chhabra,et al.  Non-Newtonian Fluids: An Introduction , 2010 .

[37]  Michael D. Graham,et al.  Combined Brownian Dynamics and Spectral Simulation of the Recovery of Polymeric Fluids after Shear Flow , 1997 .

[38]  R. Keunings MICRO-MACRO METHODS FOR THE MULTISCALE SIMULATION OF VISCOELASTIC FLOW USING MOLECULAR MODELS OF KINETIC THEORY , 2004 .

[39]  P. Español,et al.  Statistical Mechanics of Dissipative Particle Dynamics. , 1995 .

[40]  Martin Kröger,et al.  Microscopic Origin of the Non-Newtonian Viscosity of Semiflexible Polymer Solutions in the Semidilute Regime. , 2014, ACS macro letters.

[41]  J. Boon The Lattice Boltzmann Equation for Fluid Dynamics and Beyond , 2003 .

[42]  Matej Praprotnik,et al.  Multiscale simulation of soft matter: from scale bridging to adaptive resolution. , 2008, Annual review of physical chemistry.

[43]  Gregory J. Wagner,et al.  Coupling of atomistic and continuum simulations using a bridging scale decomposition , 2003 .

[44]  George Em Karniadakis,et al.  Incorporation of memory effects in coarse-grained modeling via the Mori-Zwanzig formalism. , 2015, The Journal of chemical physics.

[45]  Xiu Yang,et al.  Systematic parameter inference in stochastic mesoscopic modeling , 2016, J. Comput. Phys..

[46]  K. Gerstle Advanced Mechanics of Materials , 2001 .

[47]  R. V. Craster,et al.  Geophysical Aspects of Non-Newtonian Fluid Mechanics , 2001 .

[48]  M. H. Ernst,et al.  Static and dynamic properties of dissipative particle dynamics , 1997, cond-mat/9702036.

[49]  P. Español,et al.  Perspective: Dissipative particle dynamics. , 2016, The Journal of chemical physics.

[50]  R. Cook,et al.  Advanced Mechanics of Materials , 1985 .

[51]  Jaroslaw Knap,et al.  Hierarchical multiscale framework for materials modeling: Equation of state implementation and application to a Taylor anvil impact test of RDX , 2015 .

[52]  George Em Karniadakis,et al.  Steady shear rheometry of dissipative particle dynamics models of polymer fluids in reverse Poiseuille flow. , 2010, The Journal of chemical physics.

[53]  Jie Ouyang,et al.  A hybrid multiscale dissipative particle dynamics method coupling particle and continuum for complex fluid , 2015 .

[54]  R. Bird,et al.  Constitutive equations for polymeric liquids , 1995 .

[55]  G. Karniadakis,et al.  Spectral/hp Element Methods for Computational Fluid Dynamics , 2005 .

[56]  He Li,et al.  Modeling sickle hemoglobin fibers as one chain of coarse-grained particles. , 2012, Journal of biomechanics.

[57]  Eric Darve,et al.  Computing the non-Markovian coarse-grained interactions derived from the Mori-Zwanzig formalism in molecular systems: Application to polymer melts. , 2017, The Journal of chemical physics.

[58]  E. Vanden-Eijnden,et al.  Mori-Zwanzig formalism as a practical computational tool. , 2010, Faraday discussions.

[59]  J. Wallace Quadrant Analysis in Turbulence Research: History and Evolution , 2016 .

[60]  Curtiss,et al.  Dynamics of Polymeric Liquids , .

[61]  S Succi,et al.  Non-Newtonian unconfined flow and heat transfer over a heated cylinder using the direct-forcing immersed boundary-thermal lattice Boltzmann method. , 2014, Physical review. E, Statistical, nonlinear, and soft matter physics.

[62]  Mark F. Horstemeyer,et al.  Multiscale Modeling: A Review , 2009 .

[63]  Zhenhua Chai,et al.  Multiple-relaxation-time lattice Boltzmann model for generalized Newtonian fluid flows , 2011 .

[64]  G. G. Stokes "J." , 1890, The New Yale Book of Quotations.