RNA-triggered gene silencing.

Double-stranded RNA (dsRNA) has recently been shown to trigger sequence-specific gene silencing in a wide variety of organisms, including nematodes, plants, trypanosomes, fruit flies and planaria; meanwhile an as yet uncharacterized RNA trigger has been shown to induce DNA methylation in several different plant systems. In addition to providing a surprisingly effective set of tools to interfere selectively with gene function, these observations are spurring new inquiries to understand RNA-triggered genetic-control mechanisms and their biological roles.

[1]  H. Zarbl,et al.  Transcriptional and Posttranscriptional Silencing of Rodent α1(I) Collagen by a Homologous Transcriptionally Self-Silenced Transgene , 1999, Molecular and Cellular Biology.

[2]  M. Van Montagu,et al.  Silencing of beta-1,3-glucanase genes in tobacco correlates with an increased abundance of RNA degradation intermediates. , 1998, Nucleic acids research.

[3]  L. Sperling,et al.  Homology-dependent gene silencing in Paramecium. , 1998, Molecular biology of the cell.

[4]  M. Van Montagu,et al.  Posttranscriptional silencing of reporter transgenes in tobacco correlates with DNA methylation. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[5]  L Misquitta,et al.  Targeted disruption of gene function in Drosophila by RNA interference (RNA-i): a role for nautilus in embryonic somatic muscle formation. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[6]  D. Baulcombe,et al.  A similarity between viral defense and gene silencing in plants. , 1997, Science.

[7]  E. Selker,et al.  DNA methylation inhibits elongation but not initiation of transcription in Neurospora crassa. , 1997, Genes & development.

[8]  C. Walsh,et al.  Cytosine methylation and the ecology of intragenomic parasites. , 1997, Trends in genetics : TIG.

[9]  A. Fire,et al.  Double-stranded RNA as a mediator in sequence-specific genetic silencing and co-suppression. , 1998, Trends in genetics : TIG.

[10]  C. Gorman,et al.  Intervening sequences increase efficiency of RNA 3' processing and accumulation of cytoplasmic RNA. , 1990, Nucleic acids research.

[11]  A. Fire,et al.  Specific interference by ingested dsRNA , 1998, Nature.

[12]  H. L. Sänger,et al.  Heavy de novo methylation at symmetrical and non-symmetrical sites is a hallmark of RNA-directed DNA methylation. , 1999, Nucleic acids research.

[13]  W. J. Lucas,et al.  An RNA-Based Information Superhighway in Plants , 1998, Science.

[14]  D. Baulcombe,et al.  Systemic Spread of Sequence-Specific Transgene RNA Degradation in Plants Is Initiated by Localized Introduction of Ectopic Promoterless DNA , 1998, Cell.

[15]  J. Birchler,et al.  Cosuppression in Drosophila: Gene Silencing of Alcohol dehydrogenase by white-Adh Transgenes Is Polycomb Dependent , 1997, Cell.

[16]  P. I. Marcus Interferon induction by viruses: one molecule of dsRNA as the threshold for interferon induction. , 1983, Interferon.

[17]  Marcus Pi Interferon induction by viruses: one molecule of dsRNA as the threshold for interferon induction. , 1983 .

[18]  C. Cogoni Transgene silencing oftheal-1 gene invegetative cells ofNeurospora ismediated bya cytoplasmic effector anddoesnotdependon DNA-DNA interactions orDNA methylation , 1996 .

[19]  A. Fire,et al.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans , 1998, Nature.

[20]  P. Waterhouse,et al.  Virus resistance and gene silencing in plants can be induced by simultaneous expression of sense and antisense RNA. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[21]  M. Culbertson,et al.  RNA surveillance. Unforeseen consequences for gene expression, inherited genetic disorders and cancer. , 1999, Trends in genetics : TIG.

[22]  H. Vaucheret,et al.  Infection of tobacco or Arabidopsis plants by CMV counteracts systemic post-transcriptional silencing of nonviral (trans)genes. , 1998, Virology.

[23]  S. Henikoff Conspiracy of silence among repeated transgenes. , 1998, BioEssays : news and reviews in molecular, cellular and developmental biology.

[24]  A. Fire,et al.  Production of antisense RNA leads to effective and specific inhibition of gene expression in C. elegans muscle. , 1991, Development.

[25]  D. Baulcombe Fast forward genetics based on virus-induced gene silencing. , 1999, Current opinion in plant biology.

[26]  M. Ishizuka,et al.  A transgene with repeated DNA causes high frequency, post-transcriptional suppression of ACC-oxidase gene expression in tomato. , 1998, The Plant journal : for cell and molecular biology.

[27]  Jeannie T. Lee,et al.  Tsix, a gene antisense to Xist at the X-inactivation centre , 1999, Nature Genetics.

[28]  H. L. Sänger,et al.  RNA-directed de novo methylation of genomic sequences in plants , 1994, Cell.

[29]  H. L. Sänger,et al.  Isolation of an RNA-Directed RNA Polymerase–Specific cDNA Clone from Tomato , 1998, Plant Cell.

[30]  H. L. Sänger,et al.  RNA-directed RNA polymerase from tomato leaves. II. Catalytic in vitro properties. , 1993, The Journal of biological chemistry.

[31]  C. Mello,et al.  RNAi in C. elegans: Soaking in the Genome Sequence , 1998, Science.

[32]  M. Matzke,et al.  Production of aberrant promoter transcripts contributes to methylation and silencing of unlinked homologous promoters in trans , 1999, The EMBO journal.

[33]  A. Mallory,et al.  A viral suppressor of gene silencing in plants. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[34]  P. Seeburg,et al.  A standardized nomenclature for adenosine deaminases that act on RNA. , 1997, RNA.

[35]  D. Inzé,et al.  Suppression of beta‐1,3‐glucanase transgene expression in homozygous plants. , 1992, The EMBO journal.

[36]  K. Gull,et al.  Double-stranded RNA induces mRNA degradation in Trypanosoma brucei. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[37]  D. Baulcombe,et al.  Retracted: Viral pathogenicity determinants are suppressors of transgene silencing in Nicotiana benthamiana , 1998, The EMBO journal.

[38]  M. Clemens,et al.  PKR--a protein kinase regulated by double-stranded RNA. , 1997, The international journal of biochemistry & cell biology.

[39]  E. Wagner,et al.  Imprinted expression of the Igf2r gene depends on an intronic CpG island , 1997, Nature.

[40]  K. Kasschau,et al.  A Counterdefensive Strategy of Plant Viruses Suppression of Posttranscriptional Gene Silencing , 1998, Cell.

[41]  R. Carthew,et al.  Use of dsRNA-Mediated Genetic Interference to Demonstrate that frizzled and frizzled 2 Act in the Wingless Pathway , 1998, Cell.

[42]  G. Macino,et al.  Gene silencing in Neurospora crassa requires a protein homologous to RNA-dependent RNA polymerase , 1999, Nature.

[43]  P. Mourrain,et al.  Arabidopsis Mutants Impaired in Cosuppression , 1998, Plant Cell.

[44]  G. Macino,et al.  Quelling: transient inactivation of gene expression in Neurospora crassa by transformation with homologous sequences , 1992, Molecular microbiology.

[45]  M. Primig,et al.  Reversible methylation and inactivation of marker genes in sequentially transformed tobacco plants , 1989, The EMBO journal.

[46]  A. Fire,et al.  RNA as a target of double-stranded RNA-mediated genetic interference in Caenorhabditis elegans. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[47]  J. R. Morris,et al.  Transvection and other homology effects. , 1999, Current opinion in genetics & development.

[48]  A. Maule,et al.  De novo methylation and co‐suppression induced by a cytoplasmically replicating plant RNA virus , 1998, The EMBO journal.