The Set1 Methyltransferase Opposes Ipl1 Aurora Kinase Functions in Chromosome Segregation

A balance in the activities of the Ipl Aurora kinase and the Glc7 phosphatase is essential for normal chromosome segregation in yeast. We report here that this balance is modulated by the Set1 methyltransferase. Deletion of SET1 suppresses chromosome loss in ipl1-2 cells. Conversely, combination of SET1 and GLC7 mutations is lethal. Strikingly, these effects are independent of previously defined functions for Set1 in transcription initiation and histone H3 methylation. We find that Set1 is required for methylation of conserved lysines in a kinetochore protein, Dam1. Biochemical and genetic experiments indicate that Dam1 methylation inhibits Ipl1-mediated phosphorylation of flanking serines. Our studies demonstrate that Set1 has important, unexpected functions in mitosis. Moreover, our findings suggest that antagonism between lysine methylation and serine phosphorylation is a fundamental mechanism for controlling protein function.

[1]  A. Shilatifard,et al.  A COMPASS in the voyage of defining the role of trithorax/MLL‐containing complexes: Linking leukemogensis to covalent modifications of chromatin , 2005, Journal of cellular biochemistry.

[2]  D. Reinberg,et al.  Transcription regulation by histone methylation: interplay between different covalent modifications of the core histone tails. , 2001, Genes & development.

[3]  C. Allis,et al.  Phosphorylation of Histone H3 Is Required for Proper Chromosome Condensation and Segregation , 1999, Cell.

[4]  K. Turksen,et al.  Isolation and characterization , 2006 .

[5]  A. Bloecher,et al.  Essential functions of Sds22p in chromosome stability and nuclear localization of PP1. , 2002, Journal of cell science.

[6]  B. Turner,et al.  Essential and redundant functions of histone acetylation revealed by mutation of target lysines and loss of the Gcn5p acetyltransferase , 1998, The EMBO journal.

[7]  A. Hyman,et al.  Regulation of Saccharomyces cerevisiae kinetochores by the type 1 phosphatase Glc7p. , 1999, Genes & development.

[8]  Tony Kouzarides,et al.  Histone H3 Lysine 4 Methylation Disrupts Binding of Nucleosome Remodeling and Deacetylase (NuRD) Repressor Complex* , 2002, The Journal of Biological Chemistry.

[9]  D. Botstein,et al.  Isolation and characterization of chromosome-gain and increase-in-ploidy mutants in yeast. , 1993, Genetics.

[10]  Brian D. Strahl,et al.  Role of Histone H3 Lysine 9 Methylation in Epigenetic Control of Heterochromatin Assembly , 2001, Science.

[11]  T. Jenuwein Re-SET-ting heterochromatin by histone methyltransferases. , 2001, Trends in cell biology.

[12]  C. Allis,et al.  Translating the Histone Code , 2001, Science.

[13]  A. Bloecher,et al.  Defects in Saccharomyces cerevisiae protein phosphatase type I activate the spindle/kinetochore checkpoint. , 1999, Genes & development.

[14]  C. Allis,et al.  Mitotic Phosphorylation of Histone H3: Spatio-Temporal Regulation by Mammalian Aurora Kinases , 2002, Molecular and Cellular Biology.

[15]  B. Birren,et al.  Sequencing and comparison of yeast species to identify genes and regulatory elements , 2003, Nature.

[16]  J. Davie,et al.  Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae. , 2001, Genes & development.

[17]  Erich A Nigg,et al.  Aurora kinases link chromosome segregation and cell division to cancer susceptibility. , 2004, Current opinion in genetics & development.

[18]  X. Wu,et al.  Mutations in yeast protein phosphatase type 1 that affect targeting subunit binding. , 2001, Biochemistry.

[19]  Kevin Struhl,et al.  Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. , 2003, Molecular cell.

[20]  R. Sikorski,et al.  A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. , 1989, Genetics.

[21]  Zu-Wen Sun,et al.  Mitotic Phosphorylation of Histone H3 Is Governed by Ipl1/aurora Kinase and Glc7/PP1 Phosphatase in Budding Yeast and Nematodes , 2000, Cell.

[22]  Andrew J. Bannister,et al.  Unsafe SETs: histone lysine methyltransferases and cancer. , 2002, Trends in biochemical sciences.

[23]  C. Ponting,et al.  Regulation of chromatin structure by site-specific histone H3 methyltransferases , 2000, Nature.

[24]  Daniel C. Ducat,et al.  Aurora kinases in spindle assembly and chromosome segregation. , 2004, Experimental cell research.

[25]  L. Fulton,et al.  Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting , 2003, Science.

[26]  J. Davie,et al.  Site-specific Loss of Acetylation upon Phosphorylation of Histone H3* , 2002, The Journal of Biological Chemistry.

[27]  Ken-ichi Noma,et al.  Transitions in Distinct Histone H3 Methylation Patterns at the Heterochromatin Domain Boundaries , 2001, Science.

[28]  R. Kornberg,et al.  A trithorax-group complex purified from Saccharomyces cerevisiae is required for methylation of histone H3 , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[29]  Stanley Fields,et al.  Kinetochore protein interactions and their regulation by the Aurora kinase Ipl1p. , 2003, Molecular biology of the cell.

[30]  M. Johnston,et al.  The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation. , 2003, Molecular cell.

[31]  Youngchang Kim,et al.  Molecular basis for the discrimination of repressive methyl-lysine marks in histone H3 by Polycomb and HP1 chromodomains. , 2003, Genes & development.

[32]  S. Biggins,et al.  The budding yeast Ipl1/Aurora protein kinase regulates mitotic spindle disassembly , 2003, The Journal of cell biology.

[33]  Zu-Wen Sun,et al.  Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast , 2002, Nature.

[34]  C. Allis,et al.  Synergistic coupling of histone H3 phosphorylation and acetylation in response to epidermal growth factor stimulation. , 2000, Molecular cell.

[35]  B. Turner,et al.  Cellular Memory and the Histone Code , 2002, Cell.

[36]  G. Lucchini,et al.  The set1Delta mutation unveils a novel signaling pathway relayed by the Rad53-dependent hyperphosphorylation of replication protein A that leads to transcriptional activation of repair genes. , 2001, Genes & development.

[37]  E. Nogales,et al.  Formation of a dynamic kinetochore- microtubule interface through assembly of the Dam1 ring complex. , 2005, Molecular cell.

[38]  John R. Yates,et al.  Phospho-Regulation of Kinetochore-Microtubule Attachments by the Aurora Kinase Ipl1p , 2002, Cell.

[39]  S. Grewal,et al.  Histone H3 lysine 4 methylation is mediated by Set1 and promotes maintenance of active chromatin states in fission yeast , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[40]  S. Berger,et al.  Phosphorylation of serine 10 in histone H3 is functionally linked in vitro and in vivo to Gcn5-mediated acetylation at lysine 14. , 2000, Molecular cell.

[41]  Ronald W. Davis,et al.  Mitotic stability of yeast chromosomes: A colony color assay that measures nondisjunction and chromosome loss , 1985, Cell.

[42]  Alexey G. Murzin,et al.  Structure of the HP1 chromodomain bound to histone H3 methylated at lysine 9 , 2002, Nature.

[43]  S. Elledge,et al.  The mitotic spindle is required for loading of the DASH complex onto the kinetochore. , 2002, Genes & development.

[44]  E. Gilson,et al.  Interaction between Set1p and checkpoint protein Mec3p in DNA repair and telomere functions , 1999, Nature Genetics.

[45]  C. S. Chan,et al.  Regulation of yeast chromosome segregation by Ipl1 protein kinase and type 1 protein phosphatase. , 1994, Cellular & molecular biology research.

[46]  Clarence S. M. Chan,et al.  Type 1 protein phosphatase acts in opposition to IpL1 protein kinase in regulating yeast chromosome segregation , 1994, Molecular and cellular biology.

[47]  D. Koshland,et al.  Cse4p Is a Component of the Core Centromere of Saccharomyces cerevisiae , 1998, Cell.

[48]  Nevan J. Krogan,et al.  COMPASS, a Histone H3 (Lysine 4) Methyltransferase Required for Telomeric Silencing of Gene Expression* , 2002, The Journal of Biological Chemistry.

[49]  R. Trumbly,et al.  Sds22p is a subunit of a stable isolatable form of protein phosphatase 1 (Glc7p) from Saccharomyces cerevisiae. , 2000, Archives of biochemistry and biophysics.

[50]  Hiroshi Katayama,et al.  The Aurora kinases: Role in cell transformation and tumorigenesis , 2003, Cancer and Metastasis Reviews.