Alternative methods of phylogenetic inference for the Patagonian lizard group Liolaemus elongatus-kriegi (Iguania: Liolaemini) based on mitochondrial and nuclear markers.

[1]  Jared A. Grummer.  Evolutionary History of the Patagonian Liolaemus fitzingerii Species Group of Lizards , 2017 .

[2]  J. Sites,et al.  Phylogeographic history of Patagonian lizards of the Liolaemus elongatus complex (Iguania: Liolaemini) based on mitochondrial and nuclear DNA sequences , 2017 .

[3]  J. Sites,et al.  Hidden diversity within the lizard genus Liolaemus: Genetic vs morphological divergence in the L. rothi complex (Squamata:Liolaeminae). , 2017, Molecular phylogenetics and evolution.

[4]  J. Sites,et al.  Different roads lead to Rome: Integrative taxonomic approaches lead to the discovery of two new lizard lineages in the Liolaemus montanus group (Squamata: Liolaemidae) , 2016 .

[5]  J. Sites,et al.  Molecular Phylogeny of the Liolaemus kriegi Complex (Iguania, Liolaemini) , 2015 .

[6]  M. Fujita,et al.  Limitations of Climatic Data for Inferring Species Boundaries: Insights from Speckled Rattlesnakes , 2015, PloS one.

[7]  J. Ortíz,et al.  Liolaemus lonquimayensis (Squamata: Liolaemidae), a new lizard species for Chile without precloacal pores , 2015 .

[8]  F. Urra,et al.  Two new species of the Liolaemus elongatus-kriegi complex (Iguania, Liolaemidae) from Andean highlands of southern Chile , 2015, ZooKeys.

[9]  Mariana Morando,et al.  Molecular phylogenetic relationships of the lizard clade Liolaemus elongatus (Iguania: Liolaemini) with the description of a new species from an isolated volcanic peak in northern Patagonia. , 2015, Zootaxa.

[10]  J. Sites,et al.  Multilocus phylogeography of the Patagonian lizard complex Liolaemus kriegi (Iguania: Liolaemini) , 2014 .

[11]  H. Núñez,et al.  The missing leopard lizard: Liolaemus ubaghsi sp. nov., a new species of the leopardinus clade (Reptilia: Squamata: Liolaemidae) from the Andes of the O'Higgins Region in Chile. , 2014, Zootaxa.

[12]  C. Aguilar,et al.  Integrative taxonomy and preliminary assessment of species limits in the Liolaemus walkeri complex (Squamata, Liolaemidae) with descriptions of three new species from Peru , 2013, ZooKeys.

[13]  R. Bouckaert,et al.  Species Delimitation using Genome-Wide SNP Data , 2013, bioRxiv.

[14]  R. A. Pyron,et al.  A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes , 2013, BMC Evolutionary Biology.

[15]  P. Uetz,et al.  Global Taxonomic Diversity of Living Reptiles , 2013, PloS one.

[16]  H. Núñez,et al.  Liolaemus carlosgarini and Liolaemus riodamas (Squamata: Liolaemidae), two new species of lizards lacking precloacal pores, from Andean areas of central Chile. , 2013, Zootaxa.

[17]  Cintia Débora Medina,et al.  Hacia una Taxonomía Integral: poniendo a prueba especies candidatas relacionadas a Liolaemus buergeri Werner 1907 (Iguania: Liolaemini) mediante análisis morfológicos , 2013 .

[18]  J. Sites,et al.  A new species of lizard of the Liolaemus elongatus clade (Reptilia: Iguania:Liolaemini) from Curi Leuvu River Valley, northern Patagonia, Neuquén, Argentina , 2012 .

[19]  J. Sites,et al.  Molecular dating and diversification of the South American lizard genus Liolaemus (subgenus Eulaemus) based on nuclear and mitochondrial DNA sequences , 2012 .

[20]  Mariana Morando,et al.  Accuracy and precision of species trees: effects of locus, individual, and base pair sampling on inference of species trees in lizards of the Liolaemus darwinii group (Squamata, Liolaemidae). , 2012, Systematic biology.

[21]  Jesse L. Grismer,et al.  Identification of 104 rapidly-evolving nuclear protein-coding markers for amplification across scaled reptiles using genomic resources , 2012, Conservation Genetics Resources.

[22]  Mariana Morando,et al.  Evidence of hybridization in the Argentinean lizards Liolaemus gracilis and Liolaemus bibronii (IGUANIA: LIOLAEMINI): an integrative approach based on genes and morphology. , 2011, Molecular phylogenetics and evolution.

[23]  Mariana Morando,et al.  A new species of the Liolaemus elongatus clade (Reptilia: Iguania: Liolaemini) from Cordillera del Viento, northwestern Patagonia, Neuquén, Argentina , 2010 .

[24]  R. E. Espinoza,et al.  A critical review and systematic discussion of recent classification proposals for liolaemid lizards , 2010 .

[25]  A. S. Quinteros,et al.  Three new species of the Liolaemus elongatus group (Iguania: Liolaemidae) from Argentina , 2010 .

[26]  L. Kubatko.  Identifying hybridization events in the presence of coalescence via model selection. , 2009, Systematic biology.

[27]  P. Crochet,et al.  Morphology and nuclear markers reveal extensive mitochondrial introgressions in the Iberian Wall Lizard species complex , 2009, Molecular ecology.

[28]  D. Adams,et al.  Are rates of species diversification correlated with rates of morphological evolution? , 2009, Proceedings of the Royal Society B: Biological Sciences.

[29]  J. Sullivan,et al.  Assessment of gene flow across a hybrid zone in red‐tailed chipmunks (Tamias ruficaudus) , 2009, Molecular ecology.

[30]  Patricia A. McLenachan,et al.  A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting , 2009, The American Naturalist.

[31]  Noah A Rosenberg,et al.  Gene tree discordance, phylogenetic inference and the multispecies coalescent. , 2009, Trends in ecology & evolution.

[32]  S. Edwards,et al.  Multilocus phylogeography and phylogenetics using sequence-based markers , 2009, Genetica.

[33]  J. Ortíz,et al.  Systematics and evolutionary relationships of the mountain lizard Liolaemus monticola (Liolaemini): how morphological and molecular evidence contributes to reveal hidden species diversity , 2009 .

[34]  A. Yoder,et al.  Anonymous nuclear markers for Malagasy plated lizards (Zonosaurus) , 2009, Molecular ecology resources.

[35]  N. Perrin,et al.  Mitochondrial and nuclear phylogeny of circum-Mediterranean tree frogs from the Hyla arborea group. , 2008, Molecular phylogenetics and evolution.

[36]  A. S. Quinteros,et al.  Two New Species of Liolaemus (Iguania: Liolaemidae) of Central West Argentina , 2008 .

[37]  D. Posada.  jModelTest: phylogenetic model averaging. , 2008, Molecular biology and evolution.

[38]  W. A. Cox,et al.  A Phylogenomic Study of Birds Reveals Their Evolutionary History , 2008, Science.

[39]  Charles W. Linkem,et al.  MITOCHONDRIAL INTROGRESSION AND INCOMPLETE LINEAGE SORTING THROUGH SPACE AND TIME: PHYLOGENETICS OF CROTAPHYTID LIZARDS , 2007, Evolution; international journal of organic evolution.

[40]  Bryan C. Carstens,et al.  Delimiting species without monophyletic gene trees. , 2007, Systematic biology.

[41]  A. Rambaut,et al.  BEAST: Bayesian evolutionary analysis by sampling trees , 2007, BMC Evolutionary Biology.

[42]  J. Scolaro,et al.  Iguanian species-richness in the Andes of boreal Patagonia: Evidence for an additional new Liolaemus lizard from Argentina lacking precloacal glands (Iguania, Liolaeminae) , 2007 .

[43]  J. Padial,et al.  Taxonomic inflation and the stability of species lists: the perils of ostrich's behavior. , 2006, Systematic biology.

[44]  Alexandros Stamatakis,et al.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models , 2006, Bioinform..

[45]  Darren P. Martin,et al.  Recombination Patterns in Aphthoviruses Mirror Those Found in Other Picornaviruses , 2006, Journal of Virology.

[46]  Q. Wheeler,et al.  The perils of DNA barcoding and the need for integrative taxonomy. , 2005, Systematic biology.

[47]  B. Dayrat,et al.  Towards integrative taxonomy , 2005 .

[48]  James Mallet,et al.  Taxonomic inflation: its influence on macroecology and conservation. , 2004, Trends in ecology & evolution.

[49]  Mariana Morando,et al.  PHYLOGENETIC RELATIONSHIPS OF LIZARDS OF THE LIOLAEMUS PETROPHILUS GROUP (SQUAMATA, LIOLAEMIDAE), WITH DESCRIPTION OF TWO NEW SPECIES FROM WESTERN ARGENTINA , 2004 .

[50]  Mariana Morando,et al.  PHYLOGENY AND PHYLOGEOGRAPHY OF THE LIOLAEMUS DARWINII COMPLEX (SQUAMATA: LIOLAEMIDAE): EVIDENCE FOR INTROGRESSION AND INCOMPLETE LINEAGE SORTING , 2004, Evolution; international journal of organic evolution.

[51]  D. J. Funk,et al.  Species-Level Paraphyly and Polyphyly: Frequency, Causes, and Consequences, with Insights from Animal Mitochondrial DNA , 2003 .

[52]  S. Carroll,et al.  Genome-scale approaches to resolving incongruence in molecular phylogenies , 2003, Nature.

[53]  O. Gascuel,et al.  A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. , 2003, Systematic biology.

[54]  John P. Huelsenbeck,et al.  MrBayes 3: Bayesian phylogenetic inference under mixed models , 2003, Bioinform..

[55]  J. Good,et al.  PHYLOGEOGRAPHY AND INTROGRESSIVE HYBRIDIZATION: CHIPMUNKS (GENUS TAMIAS) IN THE NORTHERN ROCKY MOUNTAINS , 2003, Evolution; international journal of organic evolution.

[56]  J. Sites,et al.  Sampling strategies for delimiting species: genes, individuals, and populations in the Liolaemus elongatus-kriegi complex (Squamata: Liolaemidae) in Andean-Patagonian South America. , 2003, Systematic biology.

[57]  R. E. Espinoza,et al.  TWO NEW SPECIES OF LIOLAEMUS LIZARDS FROM NORTHWESTERN ARGENTINA: SPECIATION WITHIN THE NORTHERN SUBCLADE OF THE ELONGATUS GROUP (IGUANIA: LIOLAEMIDAE) , 2003 .

[58]  Jeremy R. deWaard,et al.  Biological identifications through DNA barcodes , 2003, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[59]  Mark Blaxter,et al.  Molecular systematics: Counting angels with DNA , 2003, Nature.

[60]  S. Edwards,et al.  Evolutionary Dynamics of Intron Size, Genome Size, and Physiological Correlates in Archosaurs , 2002, The American Naturalist.

[61]  John P. Huelsenbeck,et al.  MRBAYES: Bayesian inference of phylogenetic trees , 2001, Bioinform..

[62]  A. Templeton.  Using phylogeographic analyses of gene trees to test species status and processes , 2001, Molecular ecology.

[63]  Darren Martin,et al.  RDP: detection of recombination amongst aligned sequences , 2000, Bioinform..

[64]  W. Maddison.  Gene Trees in Species Trees , 1997 .

[65]  F. Videla,et al.  A new peculiar Liolaemus species of the “ chiliensis ” phyletic group from the volcanic Cordilleran landscapes of Southern Mendoza Province, Argentina (Iguania, Lacertilia, Reptilia) , 1996 .

[66]  C. Moritz.  Defining 'Evolutionarily Significant Units' for conservation. , 1994, Trends in ecology & evolution.

[67]  J. Avise.  GENE TREES AND ORGANISMAL HISTORIES: A PHYLOGENETIC APPROACH TO POPULATION BIOLOGY , 1989, Evolution; international journal of organic evolution.

[68]  A. Meyer,et al.  Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[69]  M. Nei,et al.  Relationships between gene trees and species trees. , 1988, Molecular biology and evolution.

[70]  A. C. Hulse.  A new Liolaemus (Sauria, Iguanidae) from the High Andes of Argentina, with ecological comments , 1979, Annals of the Carnegie Museum.

[71]  J. M. Cei.  Revision of the Patagonian Iguanids of the Liolaemus elongatus Complex , 1974 .

[72]  J. Padial,et al.  Integrative taxonomy reveals cryptic Amazonian species of Pristimantis (Anura: Strabomantidae) , 2009 .

[73]  K. Queiroz**,et al.  A unified concept of species and its consequences for the future of taxonomy , 2005 .

[74]  F. Lobo.  Las relaciones filogenéticas dentro del grupo chiliensis (Iguania: Liolaemidae: Liolaemus): sumando nuevos caracteres y taxones , 2005 .

[75]  M. Sanderson.  Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. , 2002, Molecular biology and evolution.

[76]  J. Wiens,et al.  Delimiting species using DNA and morphological variation and discordant species limits in spiny lizards (Sceloporus). , 2002, Systematic biology.

[77]  F. Lobo.  A phylogenetic analysis of lizards of the Liolaemus chiliensis group (Iguania: Tropiduridae) , 2001 .

[78]  J. Huelsenbeck,et al.  MRBAYES : Bayesian inference of phylogeny , 2001 .

[79]  S. Lavoué,et al.  Left running head : Sullivan , Lavoue and Hopkins Right running head : Analysis of a riverine species flock DISCOVERY AND PHYLOGENETIC ANALYSIS OF A RIVERINE SPECIES FLOCK OF AFRICAN ELECTRIC FISHES ( MORMYRIDAE : TELEOSTEI ) , 2000 .

[80]  J. Macey,et al.  Phylogenetic relationships in the iguanid lizard genus Liolaemus: multiple origins of viviparous reproduction and evidence for recurring Andean vicariance and dispersal , 2000 .

[81]  R. Harrison.  Molecular Changes at Speciation , 1991 .

[82]  R. F. Laurent.  Segunda contribución al conocimiento de la estructura taxonómica del género Liolaemus Wiegmann (Iguanidae) , 1985 .

[83]  J. M. Cei,et al.  The Patagonian Herpetofauna , 1979 .