Dynamic split G-quadruplex programmed reversible nanodevice.

We propose a dynamic nanodevice based on a split G-quadruplex (G4). By splitting it apart, we can successfully decouple the G-tetrad formation from external stimuli, greatly expanding the stimulus for G4 based devices. Taking advantage of the rigid force from a DNA duplex, the nanodevice can be switched reversibly through the conformational transformation.

[1]  Yang Liu,et al.  Mixed matrix formulations with MOF molecular sieving for key energy-intensive separations , 2018, Nature Materials.

[2]  P. I. Pradeepkumar,et al.  Thioflavin T as an efficient inducer and selective fluorescent sensor for the human telomeric G-quadruplex DNA. , 2013, Journal of the American Chemical Society.

[3]  Itamar Willner,et al.  DNA switches: from principles to applications. , 2015, Angewandte Chemie.

[4]  Yi Du,et al.  Programmable i-motif DNA folding topology for a pH-switched reversible molecular sensing device , 2017, Nucleic acids research.

[5]  S. Balasubramanian,et al.  Quantitative visualization of DNA G-quadruplex structures in human cells. , 2013, Nature chemistry.

[6]  Henry Hess,et al.  DNA-assisted swarm control in a biomolecular motor system , 2018, Nature Communications.

[7]  Yi Lu,et al.  Highly sensitive "turn-on" fluorescent sensor for Hg2+ in aqueous solution based on structure-switching DNA. , 2008, Chemical communications.

[8]  Juewen Liu,et al.  Metal Sensing by DNA. , 2017, Chemical reviews.

[9]  J. Chao,et al.  A Surface‐Confined Proton‐Driven DNA Pump Using a Dynamic 3D DNA Scaffold , 2016, Advanced materials.

[10]  I. Willner,et al.  G-Quadruplex-Stimulated Optical and Electrocatalytic DNA Switches. , 2015, Small.

[11]  Victoria Birkedal,et al.  Multifluorophore DNA Origami Beacon as a Biosensing Platform. , 2018, ACS nano.

[12]  Itamar Willner,et al.  Orthogonal Operation of Constitutional Dynamic Networks Consisting of DNA-Tweezer Machines. , 2017, ACS nano.

[13]  Bin Zhao,et al.  Genetically Encoded Catalytic Hairpin Assembly for Sensitive RNA Imaging in Live Cells. , 2018, Journal of the American Chemical Society.

[14]  Wei Fang,et al.  Toehold-mediated DNA logic gates based on host-guest DNA-GNPs. , 2014, Chemical communications.

[15]  Toma E Tomov,et al.  DNA bipedal motor walking dynamics: an experimental and theoretical study of the dependency on step size , 2017, Nucleic acids research.

[16]  Carl Prévost-Tremblay,et al.  Antibody-powered nucleic acid release using a DNA-based nanomachine , 2017, Nature Communications.

[17]  Kaixiang Zhang,et al.  Reversible control of cell membrane receptor function using DNA nano-spring multivalent ligands† †Electronic supplementary information (ESI) available: Sequence information and synthesis of the RGD–DNA conjugate. See DOI: 10.1039/c7sc02489d Click here for additional data file. , 2017, Chemical science.

[18]  Yuyin Li,et al.  A reversible metal ion fueled DNA three-way junction molecular device for "turn-on and -off" fluorescence detection of mercury ions (II) and biothiols respectively with high selectivity and sensitivity. , 2015, Nanoscale.

[19]  S. Yao,et al.  Insight into G-quadruplex-hemin DNAzyme/RNAzyme: adjacent adenine as the intramolecular species for remarkable enhancement of enzymatic activity , 2016, Nucleic acids research.

[20]  R. Sarpong,et al.  Bio-inspired synthesis of xishacorenes A, B, and C, and a new congener from fuscol† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c9sc02572c , 2019, Chemical science.

[21]  Zhike He,et al.  An enzyme-free DNA walker that moves on the surface of functionalized magnetic microparticles and its biosensing analysis. , 2017, Chemical communications.

[22]  Dongfang Wang,et al.  A DNA Walker as a Fluorescence Signal Amplifier. , 2017, Nano letters.

[23]  Friedrich C Simmel,et al.  Nucleic acid based molecular devices. , 2011, Angewandte Chemie.

[24]  Jean-Louis Mergny,et al.  A metal-mediated conformational switch controls G-quadruplex binding affinity. , 2008, Angewandte Chemie.

[25]  Daiki Kato,et al.  Enzyme-free fluorescent-amplified aptasensors based on target-responsive DNA strand displacement via toehold-mediated click chemical ligation. , 2014, Chemical communications.

[26]  Dongsheng Liu,et al.  A pH-triggered, fast-responding DNA hydrogel. , 2009, Angewandte Chemie.

[27]  Modi Wang,et al.  Conjugating a groove-binding motif to an Ir(iii) complex for the enhancement of G-quadruplex probe behavior† †Electronic supplementary information (ESI) available: Compound characterisation and supplementary data. See DOI: 10.1039/c6sc00001k , 2016, Chemical science.

[28]  Elizabeth Ellis,et al.  Artificial molecular and nanostructures for advanced nanomachinery. , 2018, Chemical communications.

[29]  B. Saccà,et al.  The collective behavior of spring-like motifs tethered to a DNA origami nanostructure. , 2017, Nanoscale.

[30]  H. Sugiyama,et al.  Confined space facilitates G-quadruplex formation. , 2017, Nature nanotechnology.

[31]  B. Liu,et al.  DNA quadruplexes as molecular scaffolds for controlled assembly of fluorogens with aggregation-induced emission , 2018, Chemical science.

[32]  Xiang Zhou,et al.  Reversible manipulation of the G-quadruplex structures and enzymatic reactions through supramolecular host–guest interactions , 2017, Nucleic acids research.

[33]  Tao Li,et al.  A lead(II)-driven DNA molecular device for turn-on fluorescence detection of lead(II) ion with high selectivity and sensitivity. , 2010, Journal of the American Chemical Society.

[34]  Baoquan Ding,et al.  Reconfigurable Three-Dimensional Gold Nanorod Plasmonic Nanostructures Organized on DNA Origami Tripod. , 2017, ACS nano.

[35]  P. Alam ‘S’ , 2021, Composites Engineering: An A–Z Guide.

[36]  N. Gray,et al.  Corrigendum: THZ1 targeting CDK7 suppresses STAT transcriptional activity and sensitizes T-cell lymphomas to BCL2 inhibitors , 2017, Nature Communications.

[37]  Yamuna Krishnan,et al.  Cell-targetable DNA nanocapsules for spatiotemporal release of caged bioactive small molecules. , 2017, Nature nanotechnology.

[38]  Shankar Balasubramanian,et al.  Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells. , 2014, Nature chemistry.

[39]  Y. Chai,et al.  Highly Ordered and Field-Free 3D DNA Nanostructure: The Next Generation of DNA Nanomachine for Rapid Single-Step Sensing. , 2018, Journal of the American Chemical Society.

[40]  Lei Wang,et al.  A Smart DNA Tweezer for Detection of Human Telomerase Activity. , 2018, Analytical chemistry.

[41]  Itamar Willner,et al.  Nucleoapzymes: Hemin/G-Quadruplex DNAzyme-Aptamer Binding Site Conjugates with Superior Enzyme-like Catalytic Functions. , 2016, Journal of the American Chemical Society.