Design and constraints of the Drosophila segment polarity module: robust spatial patterning emerges from intertwined cell state switches.

The Drosophila segment polarity genes constitute the last tier in the segmentation cascade; their job is to maintain the boundaries between parasegments and provide positional "read-outs" within each parasegment for the entire developmental history of the animal. These genes constitute a relatively well-defined network with a relatively well-understood patterning task. In a previous publication (von Dassow et al. 2000. Nature 406:188-192) we showed that a computer model predicts the segment polarity network to be a robust boundary-making device. Here we elaborate those findings. First, we explore the constraints among parameters that govern the network model. Second, we test architectural variants of the core network, and show that the network tolerates a wide variety of adjustments in design. Third, we evaluate several topologically identical models that incorporate more or less molecular detail, finding that more-complex models perform noticeably better than simplified ones. Fourth, we discuss two instances in which the failure of the network model to behave in a life-like fashion highlights mechanistic details that need further experimental investigation. We conclude with an explanation of how the segment polarity network can be understood as an interwoven conspiracy of simple dynamical elements, several bistable switches and a homeostat. The robustness with which the network as a whole maintains a spatial regime of stable cell state emerges from generic dynamical properties of these simple elements.

[1]  Ralph I. Smith,et al.  Embryology and Phylogeny in Annelids and Arthropods , 1974 .

[2]  H. Jäckle,et al.  Pole region-dependent repression of the Drosophila gap gene Krüppel by maternal gene products , 1987, Cell.

[3]  P. Ingham,et al.  Regulation of segment polarity genes in the Drosophila blastoderm by fushi tarazu and even skipped , 1988, Nature.

[4]  N E Baker,et al.  Role of segment polarity genes in the definition and maintenance of cell states in the Drosophila embryo. , 1988, Development.

[5]  Judith A. Kassis,et al.  Two-tiered regulation of spatially patterned engrailed gene expression during Drosophila embryogenesis , 1988, Nature.

[6]  M. Scott,et al.  The Drosophila patched gene encodes a putative membrane protein required for segmental patterning , 1989, Cell.

[7]  G. Odell,et al.  A genetic switch, based on negative regulation, sharpens stripes in Drosophila embryos. , 1989, Developmental genetics.

[8]  P. Adler,et al.  A Drosophila tissue polarity locus encodes a protein containing seven potential transmembrane domains , 1989, Nature.

[9]  P. Lawrence,et al.  Distribution of the wingless gene product in drosophila embryos: A protein involved in cell-cell communication , 1989, Cell.

[10]  K. G. Coleman,et al.  Expression of engrailed proteins in arthropods, annelids, and chordates. , 1989, Cell.

[11]  Sean B. Carroll,et al.  Zebra patterns in fly embryos: Activation of stripes or repression of interstripes? , 1990, Cell.

[12]  K. Kroll,et al.  Cloning and characterization of the segment polarity gene cubitus interruptus Dominant of Drosophila. , 1990, Genes & development.

[13]  P. O’Farrell,et al.  Multiple modes of engrailed regulation in the progression towards cell fate determination , 1991, Nature.

[14]  A. M. Arias,et al.  Secretion and movement of wingless protein in the epidermis of the Drosophila embryo , 1991, Mechanisms of Development.

[15]  M. Levine,et al.  Mutually repressive interactions between the gap genes giant and Krüppel define middle body regions of the Drosophila embryo. , 1991, Development.

[16]  T. Tabata,et al.  The Drosophila hedgehog gene is expressed specifically in posterior compartment cells and is a target of engrailed regulation. , 1992, Genes & development.

[17]  Jean-Paul Vincent,et al.  The state of engrailed expression is not clonally transmitted during early Drosophila development , 1992, Cell.

[18]  Nipam H. Patel,et al.  Changing role of even-skipped during the evolution of insect pattern formation , 1992, Nature.

[19]  W. Gehring,et al.  The Drosophila sloppy paired locus encodes two proteins involved in segmentation that show homology to mammalian transcription factors. , 1992, Genes & development.

[20]  Ralf J. Sommer,et al.  Involvement of an orthologue of the Drosophila pair-rule gene hairy in segment formation of the short germ-band embryo of Tribolium (Coleoptera) , 1993, Nature.

[21]  G. von Dassow,et al.  Induction of the Xenopus organizer: expression and regulation of Xnot, a novel FGF and activin-regulated homeo box gene. , 1993, Genes & development.

[22]  M. Noll,et al.  Separable regulatory elements mediate the establishment and maintenance of cell states by the Drosophila segment‐polarity gene gooseberry. , 1993, The EMBO journal.

[23]  M. Noll,et al.  Role of the gooseberry gene in Drosophila embryos: maintenance of wingless expression by a wingless‐‐gooseberry autoregulatory loop. , 1993, The EMBO journal.

[24]  P. Lawrence,et al.  Drosophila segmentation: after the first three hours. , 1993, Development.

[25]  N. Patel The evolution of arthropod segmentation: insights from comparisons of gene expression patterns. , 1994, Development (Cambridge, England). Supplement.

[26]  Susan J. Brown,et al.  The beetle Tribolium castaneum has a fushi tarazu homolog expressed in stripes during segmentation. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[27]  W. Gehring,et al.  Localized expression of sloppy paired protein maintains the polarity of Drosophila parasegments. , 1994, Genes & development.

[28]  P. Lawrence,et al.  Drosophila wingless sustains engrailed expression only in adjoining cells: Evidence from mosaic embryos , 1994, Cell.

[29]  J. Hooper Distinct pathways for autocrine and paracrine Wingless signalling inDrosophila embryos , 1994, Nature.

[30]  D. Tautz,et al.  Insect embryogenesis - What is ancestral and what is derived? , 1994 .

[31]  W. Gehring,et al.  Functional redundancy: the respective roles of the two sloppy paired genes in Drosophila segmentation. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[32]  F. Falciani,et al.  Dax, a locust Hox gene related to fushi-tarazu but showing no pair-rule expression. , 1994, Development.

[33]  S. Carroll,et al.  Conservation of wingless patterning functions in the short-germ embryos of Tribolium castaneum , 1994, Nature.

[34]  P. O’Farrell,et al.  The making of a maggot: patterning the Drosophila embryonic epidermis. , 1994, Current opinion in genetics & development.

[35]  J. Sekelsky,et al.  Drawing a stripe in Drosophila imaginal disks: negative regulation of decapentaplegic and patched expression by engrailed. , 1995, Genetics.

[36]  N. Perrimon,et al.  The porcupine gene is required for wingless autoregulation in Drosophila. , 1995, Development.

[37]  T. Kornberg,et al.  Analysis of cubitus interruptus regulation in Drosophila embryos and imaginal disks. , 1995, Development.

[38]  N. Perrimon,et al.  Evidence for engrailed-independent wingless autoregulation in Drosophila. , 1995, Developmental biology.

[39]  K. Bhat The patched signaling pathway mediates repression of gooseberry allowing neuroblast specification by wingless during Drosophila neurogenesis. , 1996, Development.

[40]  G. Struhl,et al.  Dual Roles for Patched in Sequestering and Transducing Hedgehog , 1996, Cell.

[41]  P. Ingham,et al.  smoothened encodes a receptor-like serpentine protein required for hedgehog signalling , 1996, Nature.

[42]  Jeremy Nathans,et al.  A new member of the frizzled family from Drosophila functions as a Wingless receptor , 1996, Nature.

[43]  Eugene V Koonin,et al.  Hedgehog Patterning Activity: Role of a Lipophilic Modification Mediated by the Carboxy-Terminal Autoprocessing Domain , 1996, Cell.

[44]  C. Tabin,et al.  Biochemical evidence that Patched is the Hedgehog receptor , 1996, Nature.

[45]  T. Kaufman,et al.  Structure of the insect head as revealed by the EN protein pattern in developing embryos. , 1996, Development.

[46]  M. Noll,et al.  The Drosophila smoothened Gene Encodes a Seven-Pass Membrane Protein, a Putative Receptor for the Hedgehog Signal , 1996, Cell.

[47]  P. Ingham,et al.  Transcriptional activation of hedgehog target genes in Drosophila is mediated directly by the cubitus interruptus protein, a member of the GLI family of zinc finger DNA-binding proteins. , 1996, Genes & development.

[48]  G. von Dassow,et al.  Regulation of dorsal-ventral patterning: the ventralizing effects of the novel Xenopus homeobox gene Vox. , 1996, Development.

[49]  P. Beachy,et al.  Cholesterol Modification of Hedgehog Signaling Proteins in Animal Development , 1996, Science.

[50]  Konrad Basler,et al.  Sending and Receiving the Hedgehog Signal: Control by the Drosophila Gli Protein Cubitus interruptus , 1996, Science.

[51]  R. Nusse,et al.  Wnt signaling: a common theme in animal development. , 1997, Genes & development.

[52]  M. Strigini,et al.  A Hedgehog activity gradient contributes to AP axial patterning of the Drosophila wing. , 1997, Development.

[53]  G. Wagner,et al.  A POPULATION GENETIC THEORY OF CANALIZATION , 1997, Evolution; international journal of organic evolution.

[54]  P. Lawrence,et al.  Hedgehog organises the pattern and polarity of epidermal cells in the Drosophila abdomen. , 1997, Development.

[55]  Konrad Basler,et al.  pangolinencodes a Lef-1 homologue that acts downstream of Armadillo to transduce the Wingless signal in Drosophila , 1997, Nature.

[56]  S. Ishii,et al.  Drosophila CBP is a co-activator of cubitus interruptus in hedgehog signalling , 1997, Nature.

[57]  R. Kobayashi,et al.  Hedgehog Elicits Signal Transduction by Means of a Large Complex Containing the Kinesin-Related Protein Costal2 , 1997, Cell.

[58]  M. Scott,et al.  Costal2, a Novel Kinesin-Related Protein in the Hedgehog Signaling Pathway , 1997, Cell.

[59]  R. Finkelstein,et al.  Novel segment polarity gene interactions during embryonic head development in Drosophila. , 1997, Developmental biology.

[60]  Susan J. Brown,et al.  Molecular characterization and embryonic expression of the even-skipped ortholog of Tribolium castaneum , 1997, Mechanisms of Development.

[61]  Q. T. Wang,et al.  Drosophila cubitus interruptus forms a negative feedback loop with patched and regulates expression of Hedgehog target genes. , 1997, Development.

[62]  J. Hooper,et al.  Hedgehog signaling regulates transcription through Gli/Ci binding sites in the wingless enhancer , 1997, Mechanisms of Development.

[63]  Hans Clevers,et al.  Armadillo Coactivates Transcription Driven by the Product of the Drosophila Segment Polarity Gene dTCF , 1997, Cell.

[64]  R. Nusse,et al.  Hedgehog signaling regulates transcription through cubitus interruptus, a sequence-specific DNA binding protein. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[65]  M. Noll,et al.  Hedgehog and its patched-smoothened receptor complex: a novel signalling mechanism at the cell surface. , 1997, Biological chemistry.

[66]  N. Perrimon,et al.  The Drosophila sugarless gene modulates Wingless signaling and encodes an enzyme involved in polysaccharide biosynthesis. , 1997, Development.

[67]  S. Blair,et al.  Smoothened-mediated Hedgehog signalling is required for the maintenance of the anterior-posterior lineage restriction in the developing wing of Drosophila. , 1997, Development.

[68]  T. Kaufman,et al.  The expression of two engrailed-related genes in an apterygote insect and a phylogenetic analysis of insect engrailed-related genes , 1998, Development Genes and Evolution.

[69]  H. Tricoire,et al.  Modulation of Hedgehog target gene expression by the Fused serine–threonine kinase in wing imaginal discs , 1998, Mechanisms of Development.

[70]  Hans Clevers,et al.  Drosophila Tcf and Groucho interact to repress Wingless signalling activity , 1998, Nature.

[71]  L. Nagy,et al.  CHANGING PATTERNS OF GENE REGULATION IN THE EVOLUTION OF ARTHROPOD MORPHOLOGY , 1998 .

[72]  G. Struhl,et al.  In vivo evidence that Patched and Smoothened constitute distinct binding and transducing components of a Hedgehog receptor complex. , 1998, Development.

[73]  K. Bhat frizzled and frizzled 2 Play a Partially Redundant Role in Wingless Signaling and Have Similar Requirements to Wingless in Neurogenesis , 1998, Cell.

[74]  A. Bejsovec,et al.  Functional analysis of Wingless reveals a link between intercellular ligand transport and dorsal-cell-specific signaling. , 1998, Development.

[75]  R. Goodman,et al.  Protein kinase A directly regulates the activity and proteolysis of cubitus interruptus. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[76]  A. Plessis,et al.  Suppressor of fused links Fused and Cubitus interruptus on the Hedgehog signalling pathway , 1998, Current Biology.

[77]  N. Perrimon,et al.  Tout-velu is a Drosophila homologue of the putative tumour suppressor EXT-1 and is needed for Hh diffusion , 1998, Nature.

[78]  G. Struhl,et al.  Regulation of the Hedgehog and Wingless signalling pathways by the F-box/WD40-repeat protein Slimb , 1998, Nature.

[79]  Mariann Bienz,et al.  Drosophila CBP represses the transcription factor TCF to antagonize Wingless signalling , 1998, Nature.

[80]  R. Nusse,et al.  Wingless Repression of Drosophila frizzled 2 Expression Shapes the Wingless Morphogen Gradient in the Wing , 1998, Cell.

[81]  L. Nagy,et al.  Development of polyembryonic insects: a major departure from typical insect embryogenesis , 1998, Development Genes and Evolution.

[82]  D. Kalderon,et al.  Hedgehog stimulates maturation of Cubitus interruptus into a labile transcriptional activator , 1998, Nature.

[83]  Q. T. Wang,et al.  The subcellular localization and activity of Drosophila cubitus interruptus are regulated at multiple levels. , 1999, Development.

[84]  N. Patel,et al.  Functional conservation of the wingless–engrailed interaction as shown by a widely applicable baculovirus misexpression system , 1999, Current Biology.

[85]  S Pfeiffer,et al.  Signalling at a distance: transport of Wingless in the embryonic epidermis of Drosophila. , 1999, Seminars in cell & developmental biology.

[86]  G. von Dassow,et al.  Modularity in animal development and evolution: elements of a conceptual framework for EvoDevo. , 1999, The Journal of experimental zoology.

[87]  A. Bejsovec,et al.  Directionality of wingless protein transport influences epidermal patterning in the Drosophila embryo. , 1999, Development.

[88]  J. Nathans,et al.  Frizzled and Dfrizzled-2 function as redundant receptors for Wingless during Drosophila embryonic development. , 1999, Development.

[89]  E. Hafen,et al.  Dispatched, a Novel Sterol-Sensing Domain Protein Dedicated to the Release of Cholesterol-Modified Hedgehog from Signaling Cells , 1999, Cell.

[90]  P. Lawrence,et al.  hedgehog and engrailed: pattern formation and polarity in the Drosophila abdomen. , 1999, Development.

[91]  K. Ui-Tei,et al.  Dfrizzled-3, a new Drosophila Wnt receptor, acting as an attenuator of Wingless signaling in wingless hypomorphic mutants. , 1999, Development.

[92]  Bret J. Pearson,et al.  Recruitment of a hedgehog regulatory circuit in butterfly eyespot evolution. , 1999, Science.

[93]  T. Pietri,et al.  Differential requirements of the fused kinase for hedgehog signalling in the Drosophila embryo. , 1999, Development.

[94]  S. Selleck,et al.  The cell-surface proteoglycan Dally regulates Wingless signalling in Drosophila , 1999, Nature.

[95]  C. M. Chen,et al.  Wingless transduction by the Frizzled and Frizzled2 proteins of Drosophila. , 1999, Development.

[96]  C. Wesley Notch and Wingless Regulate Expression of Cuticle Patterning Genes , 1999, Molecular and Cellular Biology.

[97]  B. Sanson,et al.  Engrailed and Hedgehog Make the Range of Wingless Asymmetric in Drosophila Embryos , 1999, Cell.

[98]  J. Hopfield,et al.  From molecular to modular cell biology , 1999, Nature.

[99]  N. Perrimon,et al.  Dally cooperates with Drosophila Frizzled 2 to transduce Wingless signalling , 1999, Nature.

[100]  E. V. van Beers,et al.  Sloppy paired acts as the downstream target of wingless in the Drosophila CNS and interaction between sloppy paired and gooseberry inhibits sloppy paired during neurogenesis. , 2000, Development.

[101]  W. Fontana,et al.  Plasticity, evolvability, and modularity in RNA. , 2000, The Journal of experimental zoology.

[102]  Garth A. Gibson,et al.  Canalization in evolutionary genetics: a stabilizing theory? , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.

[103]  G. Odell,et al.  The segment polarity network is a robust developmental module , 2000, Nature.

[104]  G. Morata,et al.  The Wingless target gene Dfz3 encodes a new member of the Drosophila Frizzled family , 2000, Mechanisms of Development.

[105]  R. Goodman,et al.  Cubitus interruptus Requires DrosophilaCREB-Binding Protein To Activate wingless Expression in theDrosophila Embryo , 2000, Molecular and Cellular Biology.

[106]  N. Perrimon,et al.  Morphogen diffusion: the case of the Wingless protein , 2000, Nature Cell Biology.

[107]  M. Frasch,et al.  Wingless effects mesoderm patterning and ectoderm segmentation events via induction of its downstream target sloppy paired. , 2000, Development.

[108]  S. Cohen,et al.  Wingless gradient formation in the Drosophila wing , 2000, Current Biology.

[109]  M. Akam,et al.  Early embryo patterning in the grasshopper, Schistocerca gregaria: wingless, decapentaplegic and caudal expression. , 2001, Development.

[110]  S. Lall,et al.  Grasshopper hunchback expression reveals conserved and novel aspects of axis formation and segmentation. , 2001, Development.

[111]  T. Kadowaki,et al.  Drosophila Segment Polarity Gene Product Porcupine Stimulates the Posttranslational N-Glycosylation of Wingless in the Endoplasmic Reticulum* , 2002, The Journal of Biological Chemistry.

[112]  G. Odell,et al.  Robustness, Flexibility, and the Role of Lateral Inhibition in the Neurogenic Network , 2002, Current Biology.

[113]  G. Odell,et al.  Ingeneue: a versatile tool for reconstituting genetic networks, with examples from the segment polarity network. , 2002, The Journal of experimental zoology.