Modeling human-perceived quality for the assessment of digitized histopathology color standardization

Color consistency is still one of the most significant problems in whole-slide imaging since even subtle variations of color appearance in digitized slides might cause image misinterpretation by pathologists or by computer-aided diagnosis systems. These variations are mainly caused by differences in laboratory protocols and imaging devices manufactures. In this paper we propose a model for assessing color standardization algorithms in whole-slide histopathology imaging based on two metrics: (i) the color similarity between a template well-stained image and the resulting color-standardized image, and (ii) the structural distortion caused by the application of a color standardization algorithm. We employed the χ2 histogram distance as color distance measure, and the Universal Quality (Q) index for quantifying structural distortion. The developed model produce an overall quality score (OQS) in the range [0, 10] that correlates well with human-perceived color standardization quality. To the best of our knowledge, this is the first attempt to measure the efficacy of color standardization algorithms in digital pathology.

[1]  Derek R. Magee,et al.  Colour Normalisation in Digital Histopathology Images , 2009 .

[2]  Yukako Yagi,et al.  Color standardization in whole slide imaging using a color calibration slide , 2014, Journal of pathology informatics.

[3]  A. Bovik,et al.  A universal image quality index , 2002, IEEE Signal Processing Letters.

[4]  J. S. Marron,et al.  Appearance Normalization of Histology Slides , 2010, MLMI.

[5]  Anant Madabhushi,et al.  EM-based segmentation-driven color standardization of digitized histopathology , 2013, Medical Imaging.

[6]  Erik Reinhard,et al.  Color Transfer between Images , 2001, IEEE Computer Graphics and Applications.

[7]  J. S. Marron,et al.  A method for normalizing histology slides for quantitative analysis , 2009, 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[8]  Nasir M. Rajpoot,et al.  A Nonlinear Mapping Approach to Stain Normalization in Digital Histopathology Images Using Image-Specific Color Deconvolution , 2014, IEEE Transactions on Biomedical Engineering.

[9]  Michael Werman,et al.  The Quadratic-Chi Histogram Distance Family , 2010, ECCV.

[10]  Nico Karssemeijer,et al.  Quantitative analysis of stain variability in histology slides and an algorithm for standardization , 2014, Medical Imaging.

[11]  Sos Agaian,et al.  Iterative local color normalization using fuzzy image clustering , 2013, Defense, Security, and Sensing.

[12]  Yukako Yagi,et al.  Color standardization and optimization in Whole Slide Imaging , 2011, Diagnostic pathology.

[13]  J. S. Marron,et al.  Appearance normalization of histology slides , 2015, Comput. Medical Imaging Graph..