Monoallelically-expressed Noncoding RNAs form nucleolar territories on NOR-containing chromosomes and regulate rRNA expression
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J. Korlach | S. Freier | E. Tseng | S. Janga | S. Sinha | K. Prasanth | Y. Song | S. Chamberlain | S. Prasanth | B. McStay | Qinyu Hao | Hong Jin | R. Srivastava | Sui Huang | Anurupa Moitra | S. V. Daulatabad | Minxue Liu | Saba Gaffari | Shivang Bhaskar | Hazel Mangan | Rachel B. Gilmore | Xin Chen | Chengliang Wang | Elizabeth Tseng | S. Sinha
[1] E. Heard,et al. Gene regulation in time and space during X-chromosome inactivation , 2022, Nature Reviews Molecular Cell Biology.
[2] K. Prasanth,et al. Regulatory roles of nucleolus organizer region-derived long non-coding RNAs , 2021, Mammalian Genome.
[3] Jiaquan Liu,et al. lncRNA SLERT controls phase separation of FC/DFCs to facilitate Pol I transcription , 2021, Science.
[4] Aaron M. Streets,et al. The complete sequence of a human genome , 2021, bioRxiv.
[5] B. McStay,et al. Human nucleoli comprise multiple constrained territories, tethered to individual chromosomes , 2021, Genes & development.
[6] Haitao Zhao,et al. Mutual dependency between lncRNA LETN and protein NPM1 in controlling the nucleolar structure and functions sustaining cell proliferation , 2021, Cell Research.
[7] S. Janga,et al. The S-phase-induced lncRNA SUNO1 promotes cell proliferation by controlling YAP1/Hippo signaling pathway , 2020, eLife.
[8] B. McStay,et al. NORs on human acrocentric chromosome p-arms are active by default and can associate with nucleoli independently of rDNA , 2020, Proceedings of the National Academy of Sciences.
[9] Y. Yamashita,et al. Regulation of Nucleolar Dominance in Drosophila melanogaster , 2019, Genetics.
[10] Ling-Ling Chen,et al. Nascent Pre-rRNA Sorting via Phase Separation Drives the Assembly of Dense Fibrillar Components in the Human Nucleolus. , 2019, Molecular cell.
[11] Joseph G. Mccarter,et al. Human NORs, comprising rDNA arrays and functionally conserved distal elements, are located within dynamic chromosomal regions , 2019, Genes & development.
[12] E. Makeyev,et al. A Short Tandem Repeat-Enriched RNA Assembles a Nuclear Compartment to Control Alternative Splicing and Promote Cell Survival , 2018, Molecular cell.
[13] Ming Wang,et al. Activity dependent LoNA regulates translation by coordinating rRNA transcription and methylation , 2018, Nature Communications.
[14] Heng Li,et al. Minimap2: pairwise alignment for nucleotide sequences , 2017, Bioinform..
[15] Ling-Ling Chen,et al. SLERT Regulates DDX21 Rings Associated with Pol I Transcription , 2017, Cell.
[16] Richard M. Clark,et al. Epistatic and allelic interactions control expression of ribosomal RNA gene clusters in Arabidopsis thaliana , 2017, Genome Biology.
[17] Tsukasa Fukunaga,et al. RIblast: an ultrafast RNA–RNA interaction prediction system based on a seed-and-extension approach , 2016, bioRxiv.
[18] Petr Danecek,et al. BCFtools/csq: haplotype-aware variant consequences , 2016, bioRxiv.
[19] Jun Zhang,et al. Unusual Processing Generates SPA LncRNAs that Sequester Multiple RNA Binding Proteins. , 2016, Molecular cell.
[20] K. Rippe,et al. Alu element‐containing RNAs maintain nucleolar structure and function , 2015, The EMBO journal.
[21] R. Sandberg,et al. Random monoallelic expression of autosomal genes: stochastic transcription and allele-level regulation , 2015, Nature Reviews Genetics.
[22] Baoyan Bai,et al. Sequential recovery of macromolecular components of the nucleolus. , 2015, Methods in molecular biology.
[23] K. Nagata,et al. Reconstitution of human rRNA gene transcription in mouse cells by a complete SL1 complex , 2014, Journal of Cell Science.
[24] Austen R. D. Ganley,et al. The shared genomic architecture of human nucleolar organizer regions , 2013, Genome research.
[25] Jeannie T. Lee,et al. X chromosome inactivation and epigenetic responses to cellular reprogramming. , 2013, Annual review of genomics and human genetics.
[26] K. Ahmad,et al. Nucleolar Dominance of the Y Chromosome in Drosophila melanogaster , 2012, Genetics.
[27] H. Stunnenberg,et al. The chromatin remodeling complex NuRD establishes the poised state of rRNA genes characterized by bivalent histone modifications and altered nucleosome positions , 2012, Proceedings of the National Academy of Sciences.
[28] G. Längst,et al. Genome organization in and around the nucleolus. , 2011, Trends in genetics : TIG.
[29] M. Adams,et al. Integrative genomic analysis of human ribosomal DNA , 2011, Nucleic acids research.
[30] K. Gunderson,et al. Genome-wide assessment of imprinted expression in human cells , 2011, Genome Biology.
[31] C. Pikaard,et al. Mechanisms of HDA6-mediated rRNA gene silencing: suppression of intergenic Pol II transcription and differential effects on maintenance versus siRNA-directed cytosine methylation. , 2010, Genes & development.
[32] C. Pikaard,et al. Nucleolar dominance and ribosomal RNA gene silencing. , 2010, Current opinion in cell biology.
[33] A. Conesa,et al. Initial Genomics of the Human Nucleolus , 2010, PLoS genetics.
[34] I. Grummt,et al. Noncoding transcripts in sense and antisense orientation regulate the epigenetic state of ribosomal RNA genes. , 2010, Cold Spring Harbor symposia on quantitative biology.
[35] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[36] A. Shevchenko,et al. Monoallelic gene expression in mammals , 2009, Chromosoma.
[37] Craig S. Pikaard,et al. Postembryonic Establishment of Megabase-Scale Gene Silencing in Nucleolar Dominance , 2007, PloS one.
[38] I. Grummt. Different epigenetic layers engage in complex crosstalk to define the epigenetic state of mammalian rRNA genes. , 2007, Human molecular genetics.
[39] B. McStay. Nucleolar dominance: a model for rRNA gene silencing. , 2006, Genes & development.
[40] J. Cheverud,et al. Evidence for Nucleolus Organizer Regions as the Units of Regulation in Nucleolar Dominance in Arabidopsis thaliana Interecotype Hybrids , 2004, Genetics.
[41] J. S. Heslop-Harrison,et al. rRNA gene activity and control of expression mediated by methylation and imprinting during embryo development in wheat x rye hybrids , 1995, Theoretical and Applied Genetics.
[42] A. Hoffman,et al. The histone code regulating expression of the imprinted mouse Igf2r gene. , 2003, Endocrinology.
[43] C. Pikaard,et al. Epigenetic silencing of RNA polymerase I transcription , 2003, Nature Reviews Molecular Cell Biology.
[44] Chuong B. Do,et al. Access the most recent version at doi: 10.1101/gr.926603 References , 2003 .
[45] J. D. De Mey,et al. Nucleolar Assembly of the Rrna Processing Machinery in Living Cells , 2001, The Journal of cell biology.
[46] R. Nicholls,et al. Genome organization, function, and imprinting in Prader-Willi and Angelman syndromes. , 2001, Annual review of genomics and human genetics.
[47] Z. Chen,et al. Gene dosage and stochastic effects determine the severity and direction of uniparental ribosomal RNA gene silencing (nucleolar dominance) in Arabidopsis allopolyploids. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[48] Z. Chen,et al. Epigenetic silencing of RNA polymerase I transcription: a role for DNA methylation and histone modification in nucleolar dominance. , 1997, Genes & development.
[49] D C Ward,et al. Inhibition of RNA polymerase II transcription causes chromatin decondensation, loss of nucleolar structure, and dispersion of chromosomal domains. , 1996, Experimental cell research.
[50] P. Cook,et al. Site of transcription of ribosomal RNA and intranucleolar structure in HeLa cells. , 1994, Journal of cell science.
[51] M. Schmid,et al. Quantitative determination of rDNA transcription units in vertebrate cells. , 1991, Experimental cell research.
[52] H. Krider,et al. Nucleolar dominance and replicative dominance in Drosophila interspecific hybrids. , 1989, Genetics.
[53] P. Labhart,et al. Enhancer-like properties of the 60/81 bp elements in the ribosomal gene spacer of Xenopus laevis , 1984, Cell.
[54] A. Blackler,et al. Repression of nucleolar organizer activity in an interspecific hybrid of the genus Xenopus. , 1974, Developmental biology.