Automated fish age estimation from otolith images using statistical learning

Abstract The acquisition of age and growth data is of key importance for fisheries research (assessment, marine ecology issues, etc.). Consequently, automating this task is of great interest. In this paper, we investigate the use of statistical learning techniques for fish age estimation. The core of this study lies in the definition of relevant image-related features. We rely on the computation of a 1D representation summing up the content of otolith images within a predefined area of interest. Features are then extracted from this non-stationary representation depicting the alternation of seasonal growth rings. Thus, fish age estimation can be viewed as a multi-class classification issue using statistical learning strategies. In particular, a procedure based on demodulation and remodulation of fish growth patterns is used to improve the generalization properties of the trained classifiers. The experimental evaluation is carried out over a dataset of 320 plaice otolith images from age groups 1–6. We analyze both, the performances of several statistical classifiers, namely SVMs (support vector machines) and neural networks, and the relevance of the proposed image-based feature sets. In addition, the combination of additional biological and shape features to the image-related ones is considered. We reach a rate of correct age estimation of 88% w.r.t. the expert ground truth. This demonstrates the relevance of the proposed approach for the automation of routine aging and for computer-assisted aging.

[1]  Stuart A. Reeves,et al.  A simulation study of the implications of age-reading errors for stock assessment and management advice , 2003 .

[2]  Ronan Fablet,et al.  Automatic morphological detection of otolith nucleus , 2004, ICPR 2004.

[3]  Giridhar D. Mandyam,et al.  Lossless Image Compression Using the Discrete Cosine Transform , 1997, J. Vis. Commun. Image Represent..

[4]  Christopher M. Bishop,et al.  Neural networks for pattern recognition , 1995 .

[5]  Olivier D. Faugeras,et al.  Statistical shape influence in geodesic active contours , 2000, Proceedings IEEE Conference on Computer Vision and Pattern Recognition. CVPR 2000 (Cat. No.PR00662).

[6]  Alexander J. Smola,et al.  Learning with Kernels: support vector machines, regularization, optimization, and beyond , 2001, Adaptive computation and machine learning series.

[7]  Port Phillip Bay Marine and Freshwater Resources Institute , 2001 .

[8]  David C. Smith,et al.  An Integrated System for Production Fish Aging: Image Analysis and Quality Assurance , 1998 .

[9]  Vincent Rodin,et al.  Use of deformable template for two-dimensional growth ring detection of otoliths by digital image processing:: Application to plaice (Pleuronectes platessa) otoliths , 2000 .

[10]  Herve Troadec,et al.  Age estimation in common sole Solea solea larvae: validation of daily increments and evaluation of a pattern recognition technique , 1997 .

[11]  Anne Guillaud,et al.  Autonomous agents for edge detection and continuity perception on otolith images , 2002, Image Vis. Comput..

[12]  Henrik Mosegaard,et al.  Effects of sex, stock, and environment on the shape of known-age Atlantic cod (Gadus morhua) otoliths , 2004 .

[13]  Ian T. Nabney,et al.  Netlab: Algorithms for Pattern Recognition , 2002 .

[14]  Pascal Monasse,et al.  Fast computation of a contrast-invariant image representation , 2000, IEEE Trans. Image Process..

[15]  Abdessalam Benzinou,et al.  Growth ring detection on fish otoliths by a graph construction , 1996, Proceedings of 3rd IEEE International Conference on Image Processing.

[16]  R. Summerfelt,et al.  Age and growth of fish , 1988 .

[17]  S. Campana,et al.  Recent Developments in Fish Otolith Research , 1995 .