Triplex DNA-binding proteins are associated with clinical outcomes revealed by proteomic measurements in patients with colorectal cancer
暂无分享,去创建一个
H. Allgayer | C. Bender | M. V. Van Dyke | H. Mannsperger | U. Korf | P. Kambakamba | G. Mudduluru | Laura D. Nelson | D. Hughes | D. Buergy | Giridhar Mudduluru | Heiko A. Mannsperger
[1] H. Tsoi,et al. Perturbation of U2AF65/NXF1-mediated RNA nuclear export enhances RNA toxicity in polyQ diseases. , 2011, Human molecular genetics.
[2] Charles Swanton,et al. Genetic prognostic and predictive markers in colorectal cancer , 2011, Nature Reviews Cancer.
[3] D. Hanahan,et al. Hallmarks of Cancer: The Next Generation , 2011, Cell.
[4] Yingye Zheng,et al. Genomic instability and copy‐number heterogeneity of chromosome 19q, including the kallikrein locus, in ovarian carcinomas , 2011, Molecular oncology.
[5] D. Cooper,et al. Non-B DNA-forming Sequences and WRN Deficiency Independently Increase the Frequency of Base Substitution in Human Cells* , 2011, The Journal of Biological Chemistry.
[6] I. Andricioaei,et al. Transient Hoogsteen Base Pairs in Canonical Duplex DNA , 2011, Nature.
[7] Stefan Wiemann,et al. RNAi-based validation of antibodies for reverse phase protein arrays , 2010, Proteome Science.
[8] Ravinder Singh,et al. Genomic mRNA Profiling Reveals Compensatory Mechanisms for the Requirement of the Essential Splicing Factor U2AF , 2010, Molecular and Cellular Biology.
[9] Ming Yi,et al. Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes , 2010, Nucleic Acids Res..
[10] Adrian R. Krainer,et al. Alternative Splicing of SLC39A14 in Colorectal Cancer is Regulated by the Wnt Pathway* , 2010, Molecular & Cellular Proteomics.
[11] Heiko A. Mannsperger,et al. RPPanalyzer: Analysis of reverse-phase protein array data , 2010, Bioinform..
[12] A. Órfão,et al. Intratumoural cytogenetic heterogeneity of sporadic colorectal carcinomas suggests several pathways to liver metastasis , 2010, The Journal of pathology.
[13] G. Sauter,et al. 19q13 amplification is associated with high grade and stage in pancreatic cancer , 2010, Genes, chromosomes & cancer.
[14] B. Scheithauer,et al. Focal genomic amplification at 19q13.42 comprises a powerful diagnostic marker for embryonal tumors with ependymoblastic rosettes , 2010, Acta Neuropathologica.
[15] David J. Chen,et al. Involvement of Matrin 3 and SFPQ/NONO in the DNA damage response , 2010, Cell cycle.
[16] Hermann Brenner,et al. Colorectal cancer and polymorphisms in DNA repair genes WRN, RMI1 and BLM. , 2010, Carcinogenesis.
[17] W. Kuhne,et al. Involvement of p54(nrb), a PSF partner protein, in DNA double-strand break repair and radioresistance , 2009, Nucleic acids research.
[18] R. Wells,et al. Non‐B DNA conformations as determinants of mutagenesis and human disease , 2009, Molecular carcinogenesis.
[19] J. Yates,et al. Molecular architecture of the human pre-mRNA 3' processing complex. , 2009, Molecular cell.
[20] Qiyi Tang,et al. Roles of Polypyrimidine Tract Binding Proteins in Major Immediate-Early Gene Expression and Viral Replication of Human Cytomegalovirus , 2009, Journal of Virology.
[21] P. Jordan,et al. The beta-catenin/TCF4 pathway modifies alternative splicing through modulation of SRp20 expression. , 2008, RNA.
[22] M. Carmo-Fonseca,et al. The emerging role of splicing factors in cancer , 2008, EMBO reports.
[23] Guliang Wang,et al. DNA triple helices: biological consequences and therapeutic potential. , 2008, Biochimie.
[24] H. Allgayer,et al. MicroRNA-21 (miR-21) post-transcriptionally downregulates tumor suppressor Pdcd4 and stimulates invasion, intravasation and metastasis in colorectal cancer , 2008, Oncogene.
[25] J. Meyerhardt,et al. CpG island methylator phenotype-low (CIMP-low) colorectal cancer shows not only few methylated CIMP-high-specific CpG islands, but also low-level methylation at individual loci , 2008, Modern Pathology.
[26] Hiroyuki Yamamoto,et al. WRN promoter methylation possibly connects mucinous differentiation, microsatellite instability and CpG island methylator phenotype in colorectal cancer , 2008, Modern Pathology.
[27] A. Sparks,et al. The Genomic Landscapes of Human Breast and Colorectal Cancers , 2007, Science.
[28] L. Chin,et al. Common and distinct genomic events in sporadic colorectal cancer and diverse cancer types. , 2007, Cancer research.
[29] P. Hanawalt,et al. A Triplex-forming Sequence from the Human c-MYC Promoter Interferes with DNA Transcription* , 2007, Journal of Biological Chemistry.
[30] K. Lilley,et al. Identification of Internal Ribosome Entry Segment (IRES)-trans-Acting Factors for the Myc Family of IRESs , 2007, Molecular and Cellular Biology.
[31] Dinshaw J. Patel,et al. Human telomere, oncogenic promoter and 5′-UTR G-quadruplexes: diverse higher order DNA and RNA targets for cancer therapeutics , 2007, Nucleic acids research.
[32] Jung Hur,et al. β-Catenin Regulates Multiple Steps of RNA Metabolism as Revealed by the RNA Aptamer in Colon Cancer Cells , 2007 .
[33] J. Potashkin,et al. Regulation of Retention of FosB Intron 4 by PTB , 2007, PloS one.
[34] S. Mirkin. Expandable DNA repeats and human disease , 2007, Nature.
[35] S. Hirohashi,et al. Involvement of splicing factor-1 in beta-catenin/T-cell factor-4-mediated gene transactivation and pre-mRNA splicing. , 2007, Gastroenterology.
[36] Stefan Wiemann,et al. Infrared‐based protein detection arrays for quantitative proteomics , 2007, Proteomics.
[37] P. Silver,et al. Genome-wide identification of functionally distinct subsets of cellular mRNAs associated with two nucleocytoplasmic-shuttling mammalian splicing factors , 2006, Genome Biology.
[38] G. Parmigiani,et al. The Consensus Coding Sequences of Human Breast and Colorectal Cancers , 2006, Science.
[39] N. Hacohen,et al. RNA interference knockdown of hU2AF35 impairs cell cycle progression and modulates alternative splicing of Cdc25 transcripts. , 2006, Molecular biology of the cell.
[40] A. Sureau,et al. The Polypyrimidine Tract Binding Protein (PTB) Represses Splicing of Exon 6B from the β-Tropomyosin Pre-mRNA by Directly Interfering with the Binding of the U2AF65 Subunit , 2006, Molecular and Cellular Biology.
[41] M. Carmo-Fonseca,et al. In Vivo Requirement of the Small Subunit of U2AF for Recognition of a Weak 3′ Splice Site , 2006, Molecular and Cellular Biology.
[42] J. Reich,et al. Verification of predicted alternatively spliced Wnt genes reveals two new splice variants (CTNNB1 and LRP5) and altered Axin-1 expression during tumour progression , 2006, BMC Genomics.
[43] R. Stephens,et al. Long homopurine•homopyrimidine sequences are characteristic of genes expressed in brain and the pseudoautosomal region , 2006, Nucleic acids research.
[44] R. Wells,et al. Increased Negative Superhelical Density in Vivo Enhances the Genetic Instability of Triplet Repeat Sequences* , 2005, Journal of Biological Chemistry.
[45] S. Hirohashi,et al. β-Catenin Interacts With the FUS Proto-oncogene Product and Regulates Pre-mRNA Splicing , 2005 .
[46] L. Loeb,et al. Current advances in unraveling the function of the Werner syndrome protein. , 2005, Mutation research.
[47] Douglas L. Black,et al. Polypyrimidine tract binding protein blocks the 5' splice site-dependent assembly of U2AF and the prespliceosomal E complex. , 2005, Molecular cell.
[48] Robert Castelo,et al. Regulation of Fas alternative splicing by antagonistic effects of TIA-1 and PTB on exon definition. , 2005, Molecular cell.
[49] W. Dynan,et al. Identification of the Polypyrimidine Tract Binding Protein-associated Splicing Factor·p54(nrb) Complex as a Candidate DNA Double-strand Break Rejoining Factor* , 2005, Journal of Biological Chemistry.
[50] Guliang Wang,et al. Naturally occurring H-DNA-forming sequences are mutagenic in mammalian cells. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[51] M. V. Van Dyke,et al. Stm1p, a G4 Quadruplex and Purine Motif Triplex Nucleic Acid-binding Protein, Interacts with Ribosomes and Subtelomeric Y′ DNA in Saccharomyces cerevisiae* , 2004, Journal of Biological Chemistry.
[52] M. Wollerton,et al. Polypyrimidine Tract Binding Protein Modulates Efficiency of Polyadenylation , 2004, Molecular and Cellular Biology.
[53] Y. Shav-Tal,et al. PSF and p54nrb/NonO – multi‐functional nuclear proteins , 2002, FEBS letters.
[54] W. Tan,et al. U2AF Participates in the Binding of TAP (NXF1) to mRNA* , 2002, The Journal of Biological Chemistry.
[55] J. Darnell,et al. Fragile X Mental Retardation Protein Targets G Quartet mRNAs Important for Neuronal Function , 2001, Cell.
[56] J. Valcárcel,et al. Nucleocytoplasmic Shuttling of Heterodimeric Splicing Factor U2AF* , 2001, The Journal of Biological Chemistry.
[57] L. Matrisian,et al. Stabilized β-catenin immortalizes colonic epithelial cells , 2001 .
[58] B. Lopez,et al. Human 100-kDa homologous DNA-pairing protein is the splicing factor PSF and promotes DNA strand invasion. , 2000, Nucleic acids research.
[59] G. Tiscornia,et al. Myotonic dystrophy: the role of the CUG triplet repeats in splicing of a novel DMPK exon and altered cytoplasmic DMPK mRNA isoform ratios. , 2000, Molecular cell.
[60] B. Robinson,et al. Serologic responses in patients with malignant mesothelioma: evidence for both public and private specificities. , 2000, American journal of respiratory cell and molecular biology.
[61] M. V. Van Dyke,et al. The Yeast STM1 Gene Encodes a Purine Motif Triple Helical DNA-binding Protein* , 2000, The Journal of Biological Chemistry.
[62] Graeme J. Poston,et al. β‐catenin expression in primary and metastatic colorectal carcinoma , 1999 .
[63] T. Straub,et al. The RNA-splicing Factor PSF/p54 Controls DNA-Topoisomerase I Activity by a Direct Interaction* , 1998, The Journal of Biological Chemistry.
[64] M. V. Van Dyke,et al. Characterization of purine-motif triplex DNA-binding proteins in HeLa extracts. , 1998, Biochemistry.
[65] Y. Nakamura,et al. Activation of the beta-catenin gene by interstitial deletions involving exon 3 in primary colorectal carcinomas without adenomatous polyposis coli mutations. , 1998, Cancer research.
[66] Michael R. Green,et al. Targeting of U2AF65 to Sites of Active Splicing in the Nucleus , 1997, The Journal of cell biology.
[67] J. Valcárcel,et al. Sequential recognition of the pre-mRNA branch point by U2AF65 and a novel spliceosome-associated 28-kDa protein. , 1995, RNA.
[68] W. Gilbert,et al. A Yeast Gene Product, G4p2, with a Specific Affinity for Quadruplex Nucleic Acids (*) , 1995, The Journal of Biological Chemistry.
[69] Xiang-Dong Fu,et al. Novel nuclear autoantigen with splicing factor motifs identified with antibody from hepatocellular carcinoma. , 1993, The Journal of clinical investigation.
[70] C. Croce,et al. Mapping chromosomal breakpoints of Burkitt's t(8;14) translocations far upstream of c-myc. , 1992, Cancer research.
[71] M. Green,et al. Biochemical characterization of U2 snRNP auxiliary factor: an essential pre‐mRNA splicing factor with a novel intranuclear distribution. , 1991, The EMBO journal.
[72] W. Schaffner,et al. Rapid detection of octamer binding proteins with 'mini-extracts', prepared from a small number of cells. , 1989, Nucleic acids research.
[73] Michael R. Green,et al. A factor, U2AF, is required for U2 snRNP binding and splicing complex assembly , 1988, Cell.
[74] A. Bacolla,et al. Non-B DNA structure-induced genetic instability and evolution , 2009, Cellular and Molecular Life Sciences.
[75] M. Muckenthaler,et al. Novel genomic amplification targeting the microRNA cluster at 19q13.42 in a pediatric embryonal tumor with abundant neuropil and true rosettes , 2008, Acta Neuropathologica.
[76] Tesshi Yamada,et al. Beta-catenin interacts with the FUS proto-oncogene product and regulates pre-mRNA splicing. , 2005, Gastroenterology.
[77] L. Matrisian,et al. Stabilized beta-catenin immortalizes colonic epithelial cells. , 2001, Cancer research.
[78] B Getty,et al. beta-catenin expression in primary and metastatic colorectal carcinoma. , 1999, International journal of cancer.
[79] S. Mirkin,et al. Triplex DNA structures. , 1995, Annual review of biochemistry.