RNAMST: efficient and flexible approach for identifying RNA structural homologs
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[1] S. Gygi,et al. Correlation between Protein and mRNA Abundance in Yeast , 1999, Molecular and Cellular Biology.
[2] M. Hentze,et al. Molecular control of vertebrate iron metabolism: mRNA-based regulatory circuits operated by iron, nitric oxide, and oxidative stress. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[3] Thomas Dandekar,et al. Riboswitch finder tool for identification of riboswitch RNAs , 2004, Nucleic Acids Res..
[4] Jeffrey E. Barrick,et al. Riboswitches Control Fundamental Biochemical Pathways in Bacillus subtilis and Other Bacteria , 2003, Cell.
[5] R. Breaker,et al. Genetic Control by Metabolite‐Binding Riboswitches , 2003, Chembiochem : a European journal of chemical biology.
[6] Graziano Pesole,et al. PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences , 2003, Nucleic Acids Res..
[7] Sean R. Eddy,et al. Rfam: annotating non-coding RNAs in complete genomes , 2004, Nucleic Acids Res..
[8] N. Gray,et al. Control of translation initiation in animals. , 1998, Annual review of cell and developmental biology.
[9] D. Ecker,et al. RNAMotif, an RNA secondary structure definition and search algorithm. , 2001, Nucleic acids research.
[10] C. Gissi,et al. Untranslated regions of mRNAs , 2002, Genome Biology.
[11] Michael Zuker,et al. Mfold web server for nucleic acid folding and hybridization prediction , 2003, Nucleic Acids Res..
[12] Graziano Pesole,et al. UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs , 2004, Nucleic Acids Res..
[13] G. Soukup,et al. Riboswitches exert genetic control through metabolite-induced conformational change. , 2004, Current opinion in structural biology.
[14] G. Benson,et al. Tandem repeats finder: a program to analyze DNA sequences. , 1999, Nucleic acids research.
[15] Peter Schattner,et al. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs , 2005, Nucleic Acids Res..
[16] A. Viari,et al. Palingol: a declarative programming language to describe nucleic acids' secondary structures and to scan sequence database. , 1996, Nucleic acids research.
[17] Jeffrey E. Barrick,et al. New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[18] S. Eddy. Computational Genomics of Noncoding RNA Genes , 2002, Cell.
[19] G. Steger,et al. RNA structure and the regulation of gene expression , 1996, Plant Molecular Biology.
[20] N. Gray,et al. Regulation of protein synthesis by mRNA structure , 1994, Molecular Biology Reports.