The Composition and Diversity of the Gut Microbiota in Children Is Modifiable by the Household Dogs: Impact of a Canine-Specific Probiotic

The development of the infant gut microbiota is initiated during pregnancy and continued through early life and childhood, guided by the immediate environment of the child. Our aim was to characterize the shared microbiota between dogs and children as well as to determine whether introduction to dogs of a dog-specific probiotic combination modifies the transfer process. We studied 31 children from allergic families with pet dog(s) and 18 control families without a dog. Altogether 37 dogs were randomized for a 4-week period in a double-blind design to receive canine-derived probiotic product containing a mixture of L. fermentum, L. plantarum, and L. rhamnosus, or placebo. Fecal samples from children and dogs were taken before and after the treatment. Distinctive gut microbiota composition was observed in children with dogs compared to those without a dog, characterized by higher abundance of Bacteroides and short-chain fatty acid producing bacteria such as Ruminococcus and Lachnospiraceae. Probiotic intervention in dogs had an impact on the composition of the gut microbiota in both dogs and children, characterized by a reduction in Bacteroides. We provide evidence for a direct effect of home environment and household pets on children microbiota and document that modification of dog microbiota by specific probiotics is reflected in children’s microbiota.

[1]  M. Selma-Royo,et al.  Maternal Microbiota, Cortisol Concentration, and Post-Partum Weight Recovery Are Dependent on Mode of Delivery , 2020, Nutrients.

[2]  M. Schloter,et al.  Early life determinants induce sustainable changes in the gut microbiome of six-year-old children , 2019, Scientific Reports.

[3]  K. Woodcroft,et al.  Birth Mode, Breastfeeding, Pet Exposure, and Antibiotic Use: Associations With the Gut Microbiome and Sensitization in Children , 2019, Current Allergy and Asthma Reports.

[4]  Junhua Li,et al.  Impact of early events and lifestyle on the gut microbiota and metabolic phenotypes in young school-age children , 2019, Microbiome.

[5]  G. Wennergren,et al.  Pet-keeping in early life reduces the risk of allergy in a dose-dependent fashion , 2018, PloS one.

[6]  H. Flint,et al.  Mechanistic Insights Into the Cross-Feeding of Ruminococcus gnavus and Ruminococcus bromii on Host and Dietary Carbohydrates , 2018, Front. Microbiol..

[7]  T. Fall,et al.  Dog characteristics and future risk of asthma in children growing up with dogs , 2018, Scientific Reports.

[8]  M. Netea,et al.  The Inhibitory Innate Immune Sensor NLRP12 Maintains a Threshold against Obesity by Regulating Gut Microbiota Homeostasis. , 2018, Cell host & microbe.

[9]  B. Samoliński,et al.  Extent of protective or allergy-inducing effects in cats and dogs. , 2017, Annals of agricultural and environmental medicine : AAEM.

[10]  W. D. de Vos,et al.  The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota , 2017, Microbiology and Molecular Biology Reviews.

[11]  D. Cavalieri,et al.  Diet, Environments, and Gut Microbiota. A Preliminary Investigation in Children Living in Rural and Urban Burkina Faso and Italy , 2017, Front. Microbiol..

[12]  H. Tun,et al.  Exposure to household furry pets influences the gut microbiota of infant at 3–4 months following various birth scenarios , 2017, Microbiome.

[13]  Tari Haahtela,et al.  Patterns in the skin microbiota differ in children and teenagers between rural and urban environments , 2017, Scientific Reports.

[14]  V. Monedero,et al.  Relevance of secretor status genotype and microbiota composition in susceptibility to rotavirus and norovirus infections in humans , 2017, Scientific Reports.

[15]  S. Salminen,et al.  A canine-specific probiotic product in treating acute or intermittent diarrhea in dogs: A double-blind placebo-controlled efficacy study. , 2016, Veterinary microbiology.

[16]  T. Platts-Mills,et al.  Relevance of specific IgE antibody titer to the prevalence, severity, and persistence of asthma among 19-year-olds in northern Sweden. , 2016, The Journal of allergy and clinical immunology.

[17]  Hui Shen,et al.  Composition of gut microbiota in infants in China and global comparison , 2016, Scientific Reports.

[18]  G. Van Domselaar,et al.  The Gut Microbiota in Immune-Mediated Inflammatory Diseases , 2016, Front. Microbiol..

[19]  Lutz Krause,et al.  Calypso: a user-friendly web-server for mining and visualizing microbiome–environment interactions , 2016, Bioinform..

[20]  Paul J. McMurdie,et al.  DADA2: High resolution sample inference from Illumina amplicon data , 2016, Nature Methods.

[21]  D. Kasper,et al.  How colonization by microbiota in early life shapes the immune system , 2016, Science.

[22]  S. Lynch Gut Microbiota and Allergic Disease. New Insights. , 2016, Annals of the American Thoracic Society.

[23]  S. Salminen,et al.  Furry pets modulate gut microbiota composition in infants at risk for allergic disease. , 2015, The Journal of allergy and clinical immunology.

[24]  E. Ingelsson,et al.  Early Exposure to Dogs and Farm Animals and the Risk of Childhood Asthma. , 2015, JAMA pediatrics.

[25]  Chang-Seon Song,et al.  Comparison of the Oral Microbiomes of Canines and Their Owners Using Next-Generation Sequencing , 2015, PloS one.

[26]  W. Wade,et al.  Actinomyces and Related Organisms in Human Infections , 2015, Clinical Microbiology Reviews.

[27]  G. Wong,et al.  The rural–urban enigma of allergy: What can we learn from studies around the world? , 2015, Pediatric allergy and immunology : official publication of the European Society of Pediatric Allergy and Immunology.

[28]  S. Salminen,et al.  Pathogen exclusion properties of canine probiotics are influenced by the growth media and physical treatments simulating industrial processes , 2014, Journal of applied microbiology.

[29]  T. R. Licht,et al.  Establishment of Intestinal Microbiota during Early Life: a Longitudinal, Explorative Study of a Large Cohort of Danish Infants , 2014, Applied and Environmental Microbiology.

[30]  L. Desbonnet,et al.  The microbiome: stress, health and disease , 2014, Mammalian Genome.

[31]  M. Angley,et al.  Increased abundance of Sutterella spp. and Ruminococcus torques in feces of children with autism spectrum disorder , 2013, Molecular Autism.

[32]  M. Pop,et al.  Robust methods for differential abundance analysis in marker gene surveys , 2013, Nature Methods.

[33]  M. Sears,et al.  Infant gut microbiota and the hygiene hypothesis of allergic disease: impact of household pets and siblings on microbiota composition and diversity , 2013, Allergy, Asthma & Clinical Immunology.

[34]  Susan Holmes,et al.  phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data , 2013, PloS one.

[35]  Se Jin Song,et al.  Cohabiting family members share microbiota with one another and with their dogs , 2013, eLife.

[36]  Pelin Yilmaz,et al.  The SILVA ribosomal RNA gene database project: improved data processing and web-based tools , 2012, Nucleic Acids Res..

[37]  P. Bork,et al.  Enterotypes of the human gut microbiome , 2011, Nature.

[38]  W. D. de Vos,et al.  Semi-automated extraction of microbial DNA from feces for qPCR and phylogenetic microarray analysis. , 2010, Journal of microbiological methods.

[39]  G. Wong,et al.  Very low prevalence of asthma and allergies in schoolchildren from rural Beijing, China , 2009, Pediatric pulmonology.

[40]  Anne-Béatrice Dufour,et al.  The ade4 Package: Implementing the Duality Diagram for Ecologists , 2007 .

[41]  S. Beasley,et al.  Alteration of the Canine Small-Intestinal Lactic Acid Bacterium Microbiota by Feeding of Potential Probiotics , 2006, Applied and Environmental Microbiology.

[42]  Christina Gloeckner,et al.  Modern Applied Statistics With S , 2003 .

[43]  M. Fons,et al.  Ruminococcin A, a New Lantibiotic Produced by aRuminococcus gnavus Strain Isolated from Human Feces , 2001, Applied and Environmental Microbiology.

[44]  N. Åberg,et al.  Does early exposure to cat or dog protect against later allergy development? , 1999, Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology.

[45]  S. Finegold,et al.  Sources and antimicrobial susceptibilities of Campylobacter gracilis and Sutterella wadsworthensis. , 1997, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[46]  P. Gergen,et al.  Sensitization and Exposure to Pets: The Effect on Asthma Morbidity in the US Population. , 2018, The journal of allergy and clinical immunology. In practice.

[47]  P. Lepage,et al.  The Family Coriobacteriaceae , 2014 .