Small RNA-mediated transgenerational silencing of histone genes impairs fertility in piRNA mutants
暂无分享,去创建一个
D. Loew | F. Dingli | C. Didier | Eric Cornes | Meetali Singh | Piergiuseppe Quarato | Germano Cecere | Blaise Li | Martino Ugolini | Aleksei Samolygo | Giorgia Barucci
[1] Ben Lehner,et al. Intergenerational and transgenerational epigenetic inheritance in animals , 2019, Nature Cell Biology.
[2] Deniz M. Ozata,et al. PIWI-interacting RNAs: small RNAs with big functions , 2018, Nature Reviews Genetics.
[3] Z. Weng,et al. An Evolutionarily Conserved piRNA-producing Locus Required for Male Mouse Fertility , 2018 .
[4] E. Miska,et al. Natural Genetic Variation in a Multigenerational Phenotype in C. elegans , 2018, Current Biology.
[5] Gang Wan,et al. Spatiotemporal regulation of liquid-like condensates in epigenetic inheritance , 2018, Nature.
[6] Stephen Frenk,et al. Transgenerational Sterility of Piwi Mutants Represents a Dynamic Form of Adult Reproductive Diapause , 2018, Cell reports.
[7] Zhiping Weng,et al. A Sex Chromosome piRNA Promotes Robust Dosage Compensation and Sex Determination in C. elegans. , 2018, Developmental cell.
[8] Shikui Tu,et al. Identification of piRNA Binding Sites Reveals the Argonaute Regulatory Landscape of the C. elegans Germline , 2018, Cell.
[9] Zhiping Weng,et al. The piRNA targeting rules and the resistance to piRNA silencing in endogenous genes , 2018, Science.
[10] Z. Weng,et al. The Coding Regions of Germline mRNAs Confer Sensitivity to Argonaute Regulation in C. elegans , 2018, Cell reports.
[11] Xiang-Dong Fu,et al. Ubiquitination-Deficient Mutations in Human Piwi Cause Male Infertility by Impairing Histone-to-Protamine Exchange during Spermiogenesis , 2017, Cell.
[12] Scott Kennedy,et al. The RNAi Inheritance Machinery of Caenorhabditis elegans , 2017, Genetics.
[13] Przemyslaw Stempor,et al. A team of heterochromatin factors collaborates with small RNA pathways to combat repetitive elements and germline stress , 2017, bioRxiv.
[14] S. Gasser,et al. Histone H3K9 methylation is dispensable for Caenorhabditis elegans development but suppresses RNA:DNA hybrid-associated repeat instability , 2016, Nature Genetics.
[15] Fidel Ramírez,et al. deepTools2: a next generation web server for deep-sequencing data analysis , 2016, Nucleic Acids Res..
[16] Gene W. Yeo,et al. A Small RNA-Catalytic Argonaute Pathway Tunes Germline Transcript Levels to Ensure Embryonic Divisions , 2016, Cell.
[17] Uri Alon,et al. A Tunable Mechanism Determines the Duration of the Transgenerational Small RNA Inheritance in C. elegans , 2016, Cell.
[18] José A. Dianes,et al. 2016 update of the PRIDE database and its related tools , 2016, Nucleic Acids Res..
[19] Dubravka Pezic,et al. The piRNA Pathway Guards the Germline Genome Against Transposable Elements. , 2016, Advances in experimental medicine and biology.
[20] R. Ketting,et al. Maternal piRNAs Are Essential for Germline Development following De Novo Establishment of Endo-siRNAs in Caenorhabditis elegans. , 2015, Developmental cell.
[21] Kristen C. Brown,et al. piRNAs and piRNA-Dependent siRNAs Protect Conserved and Essential C. elegans Genes from Misrouting into the RNAi Pathway. , 2015, Developmental cell.
[22] Andrew W. Folkmann,et al. High Efficiency, Homology-Directed Genome Editing in Caenorhabditis elegans Using CRISPR-Cas9 Ribonucleoprotein Complexes , 2015, Genetics.
[23] Steven L Salzberg,et al. HISAT: a fast spliced aligner with low memory requirements , 2015, Nature Methods.
[24] E. Miska,et al. Ancient and Novel Small RNA Pathways Compensate for the Loss of piRNAs in Multiple Independent Nematode Lineages , 2015, PLoS biology.
[25] Z. Weng,et al. Comparative functional characterization of the CSR-1 22G-RNA pathway in Caenorhabditis nematodes , 2014, Nucleic acids research.
[26] S. Gu,et al. Complex coding of endogenous siRNA, transcriptional silencing and H3K9 methylation on native targets of germline nuclear RNAi in C. elegans , 2014, BMC Genomics.
[27] W. Huber,et al. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.
[28] Ben Lehner,et al. Co-option of the piRNA pathway for germline-specific alternative splicing of C. elegans TOR. , 2014, Cell reports.
[29] A. Quinlan. BEDTools: The Swiss‐Army Tool for Genome Feature Analysis , 2014, Current protocols in bioinformatics.
[30] Joshua A. Arribere,et al. Efficient Marker-Free Recovery of Custom Genetic Modifications with CRISPR/Cas9 in Caenorhabditis elegans , 2014, Genetics.
[31] Leonard D. Goldstein,et al. Reduced insulin/IGF-1 signaling restores germ cell immortality to Caenorhabditis elegans Piwi mutants. , 2014, Cell reports.
[32] C. Mello,et al. The Vasa Homolog RDE-12 Engages Target mRNA and Multiple Argonaute Proteins to Promote RNAi in C. elegans , 2014, Current Biology.
[33] J. Ahringer,et al. PRDE-1 is a nuclear factor essential for the biogenesis of Ruby motif-dependent piRNAs in C. elegans , 2014, Genes & development.
[34] R. Sachidanandam,et al. Global effects of the CSR-1 RNA interference pathway on transcriptional landscape , 2014, Nature Structural &Molecular Biology.
[35] Wei Shi,et al. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features , 2013, Bioinform..
[36] C. Mello,et al. The C. elegans CSR-1 argonaute pathway counteracts epigenetic silencing to promote germline gene expression. , 2013, Developmental cell.
[37] Julie M. Claycomb,et al. Protection of germline gene expression by the C. elegans Argonaute CSR-1. , 2013, Developmental cell.
[38] C. Mello,et al. CapSeq and CIP-TAP Identify Pol II Start Sites and Reveal Capped Small RNAs as C. elegans piRNA Precursors , 2012, Cell.
[39] S. Palani,et al. CSR‐1 RNAi pathway positively regulates histone expression in C. elegans , 2012, The EMBO journal.
[40] Martin J. Simard,et al. Function, Targets, and Evolution of Caenorhabditis elegans piRNAs , 2012, Science.
[41] Scott Kennedy,et al. A nuclear Argonaute promotes multi-generational epigenetic inheritance and germline immortality , 2012, Nature.
[42] Richard S. Sandstrom,et al. BEDOPS: high-performance genomic feature operations , 2012, Bioinform..
[43] Weifeng Gu,et al. C. elegans piRNAs Mediate the Genome-wide Surveillance of Germline Transcripts , 2012, Cell.
[44] C. Mello,et al. piRNAs Initiate an Epigenetic Memory of Nonself RNA in the C. elegans Germline , 2012, Cell.
[45] K. Klymko,et al. Promoters recognized by forkhead proteins exist for individual 21U-RNAs. , 2012, Molecular cell.
[46] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[47] R. Sachidanandam,et al. Identification and remediation of biases in the activity of RNA ligases in small-RNA deep sequencing , 2011, Nucleic acids research.
[48] Olivier Langella,et al. MassChroQ: A versatile tool for mass spectrometry quantification , 2011, Proteomics.
[49] Marcel Martin. Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .
[50] Harrison W. Gabel,et al. mut-16 and other mutator class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans , 2011, Proceedings of the National Academy of Sciences.
[51] Pedro J. Batista,et al. Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline. , 2009, Molecular cell.
[52] Haifan Lin,et al. The biogenesis and function of PIWI proteins and piRNAs: progress and prospect. , 2009, Annual review of cell and developmental biology.
[53] Pedro J. Batista,et al. The Argonaute CSR-1 and Its 22G-RNA Cofactors Are Required for Holocentric Chromosome Segregation , 2009, Cell.
[54] W. G. Kelly,et al. A C. elegans LSD1 Demethylase Contributes to Germline Immortality by Reprogramming Epigenetic Memory , 2009, Cell.
[55] Eugene Berezikov,et al. Piwi and piRNAs act upstream of an endogenous siRNA pathway to suppress Tc3 transposon mobility in the Caenorhabditis elegans germline. , 2008, Molecular cell.
[56] Pedro J. Batista,et al. PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans. , 2008, Molecular cell.
[57] V. Reinke,et al. DEPS-1 promotes P-granule assembly and RNA interference in C. elegans germ cells , 2008, Development.
[58] Michael L. Creech,et al. Integration of biological networks and gene expression data using Cytoscape , 2007, Nature Protocols.
[59] Emmanuel Barillot,et al. myProMS, a web server for management and validation of mass spectrometry‐based proteomic data , 2007, Proteomics.
[60] J. Pettitt,et al. Histone gene expression and histone mRNA 3' end structure in Caenorhabditis elegans , 2007, BMC Molecular Biology.
[61] Christopher M. Player,et al. Large-Scale Sequencing Reveals 21U-RNAs and Additional MicroRNAs and Endogenous siRNAs in C. elegans , 2006, Cell.
[62] S. Strome,et al. The PGL Family Proteins Associate With Germ Granules and Function Redundantly in Caenorhabditis elegans Germline Development Sequence data from this article have been deposited with the DDBJ/EMBL/GenBank Data Libraries under accession nos. AB120729 and AB120730. , 2004, Genetics.
[63] R. Kamath,et al. Genome-wide RNAi screening in Caenorhabditis elegans. , 2003, Methods.
[64] Catriona Crombie,et al. The Caenorhabditis elegans histone hairpin-binding protein is required for core histone gene expression and is essential for embryonic and postembryonic cell division. , 2002, Journal of cell science.
[65] J. Rothman,et al. The stem-loop binding protein CDL-1 is required for chromosome condensation, progression of cell death and morphogenesis in Caenorhabditis elegans. , 2002, Development.
[66] D. Schümperli,et al. Histone H4 mRNA from the nematode Ascaris lumbricoides is cis-spliced and polyadenylated. , 1997, Biochimica et biophysica acta.
[67] S. Brenner. The genetics of Caenorhabditis elegans. , 1974, Genetics.