Non-Arrhenius Protein Aggregation

Protein aggregation presents one of the key challenges in the development of protein biotherapeutics. It affects not only product quality but also potentially impacts safety, as protein aggregates have been shown to be linked with cytotoxicity and patient immunogenicity. Therefore, investigations of protein aggregation remain a major focus in pharmaceutical companies and academic institutions. Due to the complexity of the aggregation process and temperature-dependent conformational stability, temperature-induced protein aggregation is often non-Arrhenius over even relatively small temperature windows relevant for product development, and this makes low-temperature extrapolation difficult based simply on accelerated stability studies at high temperatures. This review discusses the non-Arrhenius nature of the temperature dependence of protein aggregation, explores possible causes, and considers inherent hurdles for accurately extrapolating aggregation rates from conventional industrial approaches for selecting accelerated conditions and from conventional or more advanced methods of analyzing the resulting rate data.

[1]  Ilpo Vattulainen,et al.  The hydrophobic effect and its role in cold denaturation. , 2010, Cryobiology.

[2]  Abu Nayeem Mohammad Salahuddin,et al.  Anomalous temperature-dependence of the specific interaction of concanavalin A with a multivalent ligand-dextran. , 1983, Biochimica et biophysica acta.

[3]  P. Privalov Stability of proteins. Proteins which do not present a single cooperative system. , 1982, Advances in protein chemistry.

[4]  Naresh Chennamsetty,et al.  Evaluation of a non-Arrhenius model for therapeutic monoclonal antibody aggregation. , 2011, Journal of pharmaceutical sciences.

[5]  William F. Weiss,et al.  Computational design and biophysical characterization of aggregation-resistant point mutations for γD crystallin illustrate a balance of conformational stability and intrinsic aggregation propensity. , 2011, Biochemistry.

[6]  R. Finke,et al.  Protein aggregation kinetics, mechanism, and curve-fitting: a review of the literature. , 2009, Biochimica et biophysica acta.

[7]  George B. Benedek,et al.  Temperature dependence of amyloid β-protein fibrillization , 1998 .

[8]  Serguei Tchessalov,et al.  Impact of sucrose level on storage stability of proteins in freeze-dried solids: II. Correlation of aggregation rate with protein structure and molecular mobility. , 2009, Journal of pharmaceutical sciences.

[9]  J. M. Sanchez-Ruiz,et al.  Lower kinetic limit to protein thermal stability: A proposal regarding protein stability in vivo and its relation with misfolding diseases , 2000, Proteins.

[10]  M. Waegele,et al.  Infrared study of the folding mechanism of a helical hairpin: porcine PYY. , 2010, Biochemistry.

[11]  Christopher J Roberts,et al.  Nonnative aggregation of an IgG1 antibody in acidic conditions: part 1. Unfolding, colloidal interactions, and formation of high-molecular-weight aggregates. , 2011, Journal of pharmaceutical sciences.

[12]  D. Brems,et al.  Oxidation of methionine residues in recombinant human interleukin-1 receptor antagonist: implications of conformational stability on protein oxidation kinetics. , 2007, Biochemistry.

[13]  W. Jiskoot,et al.  Towards Heat-stable Oxytocin Formulations: Analysis of Degradation Kinetics and Identification of Degradation Products , 2009, Pharmaceutical Research.

[14]  C. Roberts Kinetics of Irreversible Protein Aggregation: Analysis of Extended Lumry−Eyring Models and Implications for Predicting Protein Shelf Life , 2003 .

[15]  V. V. Mozhaev,et al.  Reversible conformational transition gives rise to 'zig-zag' temperature dependence of the rate constant of irreversible thermoinactivation of enzymes. , 1994, European journal of biochemistry.

[16]  S. Duddu,et al.  Effect of Glass Transition Temperature on the Stability of Lyophilized Formulations Containing a Chimeric Therapeutic Monoclonal Antibody , 1997, Pharmaceutical Research.

[17]  R. Sabaté,et al.  Temperature dependence of the nucleation constant rate in beta amyloid fibrillogenesis. , 2005, International journal of biological macromolecules.

[18]  R. Adami,et al.  Accelerated aging: prediction of chemical stability of pharmaceuticals. , 2005, International journal of pharmaceutics.

[19]  Christopher J Roberts,et al.  Irreversible aggregation of recombinant bovine granulocyte-colony stimulating factor (bG-CSF) and implications for predicting protein shelf life. , 2003, Journal of pharmaceutical sciences.

[20]  G. Tiana,et al.  Kinetics of different processes in human insulin amyloid formation. , 2007, Journal of molecular biology.

[21]  P. Kolhe,et al.  Impact of freezing on pH of buffered solutions and consequences for monoclonal antibody aggregation , 2009, Biotechnology progress.

[22]  S. Yoshioka,et al.  Inactivation and Aggregation of β-Galactosidase in Lyophilized Formulation Described by Kohlrausch-Williams-Watts Stretched Exponential Function , 2003, Pharmaceutical Research.

[23]  Regina M Murphy,et al.  Reconsidering the mechanism of polyglutamine peptide aggregation. , 2007, Biochemistry.

[24]  T. Dillon,et al.  Conformational implications of an inversed pH-dependent antibody aggregation. , 2009, Journal of pharmaceutical sciences.

[25]  R G Duggleby,et al.  Regression analysis of nonlinear Arrhenius plots: an empirical model and a computer program. , 1984, Computers in biology and medicine.

[26]  William F Weiss,et al.  Principles, approaches, and challenges for predicting protein aggregation rates and shelf life. , 2009, Journal of pharmaceutical sciences.

[27]  R. Murphy,et al.  Length-dependent aggregation of uninterrupted polyalanine peptides. , 2011, Biochemistry.

[28]  W. Baase,et al.  Low-temperature unfolding of a mutant of phage T4 lysozyme. 2. Kinetic investigations. , 1989, Biochemistry.

[29]  D C Rees,et al.  Some thermodynamic implications for the thermostability of proteins , 2001, Protein science : a publication of the Protein Society.

[30]  A. Fersht,et al.  The changing nature of the protein folding transition state: implications for the shape of the free-energy profile for folding. , 1998, Journal of molecular biology.

[31]  R. Parker,et al.  Characterization of the rate of thermally-induced aggregation of β-lactoglobulin and its trehalose mixtures in the glass state. , 2010, Biomacromolecules.

[32]  Georges Belfort,et al.  A universal pathway for amyloid nucleus and precursor formation for insulin , 2009, Proteins.

[33]  M. Stefani Structural polymorphism of amyloid oligomers and fibrils underlies different fibrillization pathways: immunogenicity and cytotoxicity. , 2010, Current protein & peptide science.

[34]  V. Uversky,et al.  Evidence for a Partially Folded Intermediate in α-Synuclein Fibril Formation* , 2001, The Journal of Biological Chemistry.

[35]  W. Stites,et al.  Refinement of noncalorimetric determination of the change in heat capacity, ΔCp, of protein unfolding and validation across a wide temperature range , 2008, Proteins.

[36]  K. Héberger,et al.  On the errors of Arrhenius parameters and estimated rate constant values , 1987 .

[37]  H. Balaram,et al.  Methanocaldococcus jannaschii adenylosuccinate synthetase: studies on temperature dependence of catalytic activity and structural stability. , 2008, Biochimica et biophysica acta.

[38]  Chung C. Hsu,et al.  Effect of Moisture on the Stability of a Lyophilized Humanized Monoclonal Antibody Formulation , 2001, Pharmaceutical Research.

[39]  B. Kabakoff,et al.  Identification of multiple sources of charge heterogeneity in a recombinant antibody. , 2001, Journal of chromatography. B, Biomedical sciences and applications.

[40]  H. Yamada,et al.  The mechanism of irreversible inactivation of lysozyme at pH 4 and 100 degrees C. , 1994, Biochemistry.

[41]  S. Marchal,et al.  Distinct unfolding and refolding pathways of ribonuclease a revealed by heating and cooling temperature jumps. , 2008, Biophysical journal.

[42]  P. Privalov Stability of proteins: small globular proteins. , 1979, Advances in protein chemistry.

[43]  Babatunde A. Ogunnaike,et al.  Multi-variate approach to global protein aggregation behavior and kinetics: effects of pH, NaCl, and temperature for alpha-chymotrypsinogen A. , 2010, Journal of pharmaceutical sciences.

[44]  R. Varadarajan,et al.  Prediction of the maximal stability temperature of monomeric globular proteins solely from amino acid sequence , 1999, FEBS letters.

[45]  Da Ren,et al.  Structure and stability changes of human IgG1 Fc as a consequence of methionine oxidation. , 2008, Biochemistry.

[46]  J. Fidy,et al.  Tryptophan phosphorescence signals characteristic changes in protein dynamics at physiological temperatures. , 1999, Biochimica et biophysica acta.

[47]  C. Roberts,et al.  Nucleation and growth of insulin fibrils in bulk solution and at hydrophobic polystyrene surfaces. , 2007, Biophysical journal.

[48]  S. Yoshioka,et al.  Is Stability Prediction Possible for Protein Drugs? Denaturation Kinetics of β- Galactosidase in Solution , 1994, Pharmaceutical Research.

[49]  C. Dobson,et al.  Thermal unfolding of an intermediate is associated with non-Arrhenius kinetics in the folding of hen lysozyme. , 2000, Journal of molecular biology.

[50]  Jianwei Zhu,et al.  Characterization of Recombinant Human IL-15 Deamidation and Its Practical Elimination through Substitution of Asparagine 77 , 2011, Pharmaceutical Research.

[51]  C. Roberts,et al.  Non-native aggregation of alpha-chymotrypsinogen occurs through nucleation and growth with competing nucleus sizes and negative activation energies. , 2007, Biochemistry.

[52]  Christopher J Roberts,et al.  Predicting accelerated aggregation rates for monoclonal antibody formulations, and challenges for low-temperature predictions. , 2011, Journal of pharmaceutical sciences.

[53]  C. Roberts,et al.  Nonnative aggregation of an IgG1 antibody in acidic conditions, part 2: nucleation and growth kinetics with competing growth mechanisms. , 2011, Journal of pharmaceutical sciences.

[54]  R. Sabaté,et al.  Energy barriers for HET‐s prion forming domain amyloid formation , 2009, The FEBS journal.

[55]  E. Waters,et al.  Thermal stability of thaumatin-like protein, chitinase, and invertase isolated from Sauvignon blanc and Semillon juice and their role in haze formation in wine. , 2010, Journal of agricultural and food chemistry.

[56]  A. Fersht,et al.  Negative activation enthalpies in the kinetics of protein folding. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[57]  D. Teplow,et al.  Temperature dependence of amyloid beta-protein fibrillization. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[58]  F. Ferrone,et al.  Analysis of protein aggregation kinetics. , 1999, Methods in enzymology.

[59]  Martin Gruebele,et al.  Rate−Temperature Relationships in λ-Repressor Fragment λ6-85 Folding† , 2004 .

[60]  W. J. Becktel,et al.  Protein stability curves , 1987, Biopolymers.

[61]  Martin Gruebele,et al.  Rate-temperature relationships in lambda-repressor fragment lambda 6-85 folding. , 2004, Biochemistry.

[62]  M C Manning,et al.  Controlling deamidation rates in a model peptide: effects of temperature, peptide concentration, and additives. , 2001, Journal of pharmaceutical sciences.

[63]  Christopher J Roberts,et al.  Non‐native protein aggregation kinetics , 2007, Biotechnology and bioengineering.

[64]  Bertrand Morel,et al.  Environmental conditions affect the kinetics of nucleation of amyloid fibrils and determine their morphology. , 2010, Biophysical journal.

[65]  T. Oas,et al.  A statistical thermodynamic model of the protein ensemble. , 2006, Chemical reviews.

[66]  Christopher J Roberts,et al.  A Lumry-Eyring nucleated polymerization model of protein aggregation kinetics: 1. Aggregation with pre-equilibrated unfolding. , 2007, The journal of physical chemistry. B.

[67]  Bernhardt L Trout,et al.  Comparative oxidation studies of methionine residues reflect a structural effect on chemical kinetics in rhG-CSF. , 2006, Biochemistry.

[68]  B. L. Chen,et al.  Low-temperature unfolding of a mutant of phage T4 lysozyme. 1. Equilibrium studies. , 1989, Biochemistry.

[69]  S. Cairoli,et al.  Reversible and irreversible modifications ofβ-lactoglobulin upon exposure to heat , 1994, Journal of protein chemistry.

[70]  C. Roberts,et al.  Lumry-Eyring nucleated-polymerization model of protein aggregation kinetics. 2. Competing growth via condensation and chain polymerization. , 2009, The journal of physical chemistry. B.

[71]  D. Hambly,et al.  The effect of sucrose hydrolysis on the stability of protein therapeutics during accelerated formulation studies. , 2009, Journal of pharmaceutical sciences.

[72]  R. W. Visschers,et al.  Heat‐induced denaturation and aggregation of ovalbumin at neutral pH described by irreversible first‐order kinetics , 2003, Protein science : a publication of the Protein Society.

[73]  Ruth Nussinov,et al.  Maximal stabilities of reversible two-state proteins. , 2002, Biochemistry.

[74]  Scott C. Herndon,et al.  Rate Coefficients for the Reactions of Hydroxyl Radicals with Methane and Deuterated Methanes , 1997 .

[75]  J. Feder,et al.  Thermal properties of human IgG. , 1987, Molecular immunology.

[76]  David Eisenberg,et al.  The structural biology of protein aggregation diseases: Fundamental questions and some answers. , 2006, Accounts of chemical research.

[77]  Michele Vendruscolo,et al.  Characterization of the nucleation barriers for protein aggregation and amyloid formation , 2007, HFSP journal.

[78]  P. Stathopulos,et al.  Non-linear effects of temperature and urea on the thermodynamics and kinetics of folding and unfolding of hisactophilin. , 2004, Journal of molecular biology.

[79]  Vincenzo Martorana,et al.  Protofibril Formation of Amyloid β-Protein at Low pH via a Non-cooperative Elongation Mechanism* , 2005, Journal of Biological Chemistry.

[80]  L. Riekert,et al.  K. J. Laidler: Chemical Kinetics, Second Edition. Mc Graw Hill Book Company, New York 1965. 566 Seiten. Preis: $ 9,50 , 1966, Berichte der Bunsengesellschaft für physikalische Chemie.