Intersubunit movement is required for ribosomal translocation

Translocation of tRNA and mRNA during protein synthesis is believed to be coupled to structural changes in the ribosome. The “ratchet model,” based on cryo-EM reconstructions of ribosome complexes, invokes relative movement of the 30S and 50S ribosomal subunits in this process; however, evidence that directly demonstrates a requirement for intersubunit movement during translocation is lacking. To address this problem, we created an intersubunit disulfide cross-link to restrict potential movement. The cross-linked ribosomes were unable to carry out polypeptide synthesis; this inhibition was completely reversed upon reduction of the disulfide bridge. In vitro assays showed that the cross-linked ribosomes were specifically blocked in elongation factor G-dependent translocation. These findings show that intersubunit movement is required for ribosomal translocation, accounting for the universal two-subunit architecture of ribosomes.

[1]  M. Bretscher Translocation in Protein Synthesis: A Hybrid Structure Model , 1968, Nature.

[2]  R. Sowdhamini,et al.  Conformations of disulfide bridges in proteins. , 2009, International journal of peptide and protein research.

[3]  L. Gold,et al.  Selection of the initiator tRNA by Escherichia coli initiation factors. , 1989, Genes & development.

[4]  A. Tissières,et al.  Ribonucleoprotein Particles from Escherichia Coli , 1958, Nature.

[5]  R. Green,et al.  EFG-independent translocation of the mRNA:tRNA complex is promoted by modification of the ribosome with thiol-specific reagents. , 2002, Journal of molecular biology.

[6]  R. Traut,et al.  The effect of sulfhydryl reagents on ribosome activity. , 1967, European journal of biochemistry.

[7]  Joachim Frank,et al.  Locking and Unlocking of Ribosomal Motions , 2003, Cell.

[8]  H. Noller,et al.  Accurate translocation of mRNA by the ribosome requires a peptidyl group or its analog on the tRNA moving into the 30S P site. , 2002, Molecular cell.

[9]  H. Sambrook Molecular cloning : a laboratory manual. Cold Spring Harbor, NY , 1989 .

[10]  R. Traut,et al.  Separation and radioautography of microgram quantities of ribosomal proteins by two‐dimensional polyacrylamide gel electrophoresis , 1973, FEBS letters.

[11]  H. Noller,et al.  Involvement of 16S rRNA nucleotides G1338 and A1339 in discrimination of initiator tRNA. , 2005, Molecular cell.

[12]  H. Schägger,et al.  Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa. , 1987, Analytical biochemistry.

[13]  Spirin As [On the mechanism of ribosome function. The hypothesis of locking-unlocking of subparticles]. , 1968 .

[14]  L. Bosch,et al.  Isolation and functional analysis of histidine-tagged elongation factor Tu. , 1992, European journal of biochemistry.

[15]  Frank Schluenzen,et al.  High Resolution Structure of the Large Ribosomal Subunit from a Mesophilic Eubacterium , 2001, Cell.

[16]  V. Ramakrishnan,et al.  Recognition of Cognate Transfer RNA by the 30S Ribosomal Subunit , 2001, Science.

[17]  H. Noller,et al.  Interconversion of active and inactive 30 S ribosomal subunits is accompanied by a conformational change in the decoding region of 16 S rRNA. , 1986, Journal of molecular biology.

[18]  S. Chervitz,et al.  Transmembrane signaling by the aspartate receptor: engineered disulfides reveal static regions of the subunit interface. , 1995, Biochemistry.

[19]  Walter E. Hill,et al.  The Ribosome : structure, function, and evolution , 1990 .

[20]  H. Noller,et al.  Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites , 1989, Cell.

[21]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[22]  A. Spirin,et al.  Stimulation of "non-enzymic" translocation in ribosomes by p-chloromercuribenzoate. , 1971, FEBS letters.

[23]  C. Kurland,et al.  Nucleoside triphosphate regeneration decreases the frequency of translation errors. , 1979, Proceedings of the National Academy of Sciences of the United States of America.

[24]  G. Church,et al.  Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: application to open reading frame characterization , 1997, Journal of bacteriology.

[25]  H. Noller,et al.  Catalysis of Ribosomal Translocation by Sparsomycin , 2003, Science.

[26]  M. Saraste,et al.  FEBS Lett , 2000 .

[27]  S. Pestka Studies on the formation of transfer ribonucleic acid-ribosome complexes. VI. Oligopeptide synthesis and translocation on ribosomes in the presence and absence of soluble transfer factors. , 1969, The Journal of biological chemistry.

[28]  Harry F. Noller,et al.  Intermediate states in the movement of transfer RNA in the ribosome , 1989, Nature.

[29]  P. Traub,et al.  [41] Reconstitution of ribosomes from subribosomal components , 1971 .

[30]  M. Rodnina,et al.  Conformationally restricted elongation factor G retains GTPase activity but is inactive in translocation on the ribosome. , 2000, Molecular cell.

[31]  R. Traut,et al.  Diagonal polyacrylamide-dodecyl sulfate gel electrophoresis for the identification of ribosomal proteins crosslinked with methyl-4-mercaptobutyrimidate. , 1974, Proceedings of the National Academy of Sciences of the United States of America.

[32]  Joachim Frank,et al.  A ratchet-like inter-subunit reorganization of the ribosome during translocation , 2000, Nature.

[33]  Harry F. Noller,et al.  Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements , 2014, Cell.

[34]  T. Earnest,et al.  Crystal Structure of the Ribosome at 5.5 Å Resolution , 2001, Science.

[35]  J. Holton,et al.  Structures of the Bacterial Ribosome at 3.5 Å Resolution , 2005, Science.