Agrobacterium spp. nosocomial outbreak assessment using rapid MALDI-TOF MS based typing, confirmed by whole genome sequencing

[1]  Florent Lassalle,et al.  Two Novel Genomospecies in the Agrobacterium tumefaciens Species Complex Associated with Rose Crown Gall. , 2019, Phytopathology.

[2]  T. H. Smits,et al.  Molecular investigation of isolates from a multistate polymicrobial outbreak associated with contaminated total parenteral nutrition in Brazil , 2018, BMC Infectious Diseases.

[3]  Rossen,et al.  Practical Issues in Implementing Whole-Genome-Sequencing in Routine Diagnostic Microbiology Genomic and Molecular Diagnostics , 2018 .

[4]  J. Young,et al.  International Committee on Systematics of Prokaryotes Subcommittee for the Taxonomy of Rhizobium and Agrobacterium Minutes of the meeting, Budapest, 25 August 2016. , 2017, International journal of systematic and evolutionary microbiology.

[5]  Michael Oberle,et al.  The Technical and Biological Reproducibility of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS) Based Typing: Employment of Bioinformatics in a Multicenter Study , 2016, PloS one.

[6]  V. Barbe,et al.  Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium , 2016, bioRxiv.

[7]  J. Møller,et al.  Rapid first-line discrimination of methicillin resistant Staphylococcus aureus strains using MALDI-TOF MS. , 2015, International journal of medical microbiology : IJMM.

[8]  J. Rolain,et al.  MALDI-TOF MS as a Tool To Detect a Nosocomial Outbreak of Extended-Spectrum-β-Lactamase- and ArmA Methyltransferase-Producing Enterobacter cloacae Clinical Isolates in Algeria , 2015, Antimicrobial Agents and Chemotherapy.

[9]  E. Martínez-Romero,et al.  Taxonomy of rhizobia and agrobacteria from the Rhizobiaceae family in light of genomics. , 2015, Systematic and applied microbiology.

[10]  F. Aujoulat,et al.  Rhizobium pusense is the main human pathogen in the genus Agrobacterium/Rhizobium. , 2015, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

[11]  J. Budzik,et al.  Spondylodiscitis due to Rhizobium radiobacter. , 2015, Medecine et maladies infectieuses.

[12]  Michael Oberle,et al.  Matrix-Assisted Laser Desorption/Ionization Time of Flight Mass-Spectrometry (MALDI-TOF MS) Based Typing of Extended-Spectrum β-Lactamase Producing E. coli – A Novel Tool for Real-Time Outbreak Investigation , 2015, PloS one.

[13]  J. Pothier,et al.  Ribosomal protein biomarkers provide root nodule bacterial identification by MALDI-TOF MS , 2015, Applied Microbiology and Biotechnology.

[14]  A. Willems,et al.  Revised phylogeny of Rhizobiaceae: proposal of the delineation of Pararhizobium gen. nov., and 13 new species combinations. , 2015, Systematic and applied microbiology.

[15]  Alex van Belkum,et al.  Microbial Typing by Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry: Do We Need Guidance for Data Interpretation? , 2014, Journal of Clinical Microbiology.

[16]  H. Sax,et al.  Low-hanging fruit for human factors design in infection prevention--still too high to reach? , 2014, American journal of infection control.

[17]  Peter Lasch,et al.  Insufficient discriminatory power of MALDI-TOF mass spectrometry for typing of Enterococcus faecium and Staphylococcus aureus isolates. , 2014, Journal of microbiological methods.

[18]  Â. Nobre,et al.  Native mitral valve endocarditis due to Rhizobium Radiobacter - first case report. , 2013, Revista portuguesa de cirurgia cardio-toracica e vascular : orgao oficial da Sociedade Portuguesa de Cirurgia Cardio-Toracica e Vascular.

[19]  A. Friedrich,et al.  Overview of molecular typing methods for outbreak detection and epidemiological surveillance. , 2013, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.

[20]  A. Mencacci,et al.  Identification of nosocomial outbreaks of Acinetobacter baumannii using MALDI-TOF mass spectrometry , 2012 .

[21]  J. Lipuma,et al.  Rhizobium radiobacter bacteremia in a neonate , 2012, Infection.

[22]  F. Vandenesch,et al.  Three Cases of Post-Cataract Surgery Endophthalmitis Due to Rhizobium (Agrobacterium) radiobacter , 2012, Journal of Clinical Microbiology.

[23]  D. Venter,et al.  First outbreak of PVL-positive nonmultiresistant MRSA in a neonatal ICU in Australia: comparison of MALDI-TOF and SNP-plus-binary gene typing , 2010, European Journal of Clinical Microbiology & Infectious Diseases.

[24]  Hans-Peter Klenk,et al.  Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison , 2010, Standards in genomic sciences.

[25]  D. Warren,et al.  Clinical practice guidelines for the diagnosis and management of intravascular catheter-related infection: 2009 Update by the Infectious Diseases Society of America. , 2009, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[26]  J. Canon,et al.  Agrobacterium radiobacter bacteremia in oncologic and geriatric patients: presentation of two cases and review of the literature. , 2008, International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases.

[27]  C. Chen,et al.  Rhizobium radiobacter as an opportunistic pathogen in central venous catheter-associated bloodstream infection: case report and review. , 2008, The Journal of hospital infection.

[28]  F. Grimont,et al.  Molecular Typing of Agrobacterium Species Isolates From Catheter-Related Bloodstream Infections , 2004, Infection Control & Hospital Epidemiology.

[29]  K. Rolston,et al.  Catheter-Related Bacteremia Caused by Agrobacterium radiobacter in a Cancer Patient: Case Report and Literature Review , 2003, Infection.

[30]  P. Oger,et al.  Agrobacterium is a definable genus of the family Rhizobiaceae. , 2003, International journal of systematic and evolutionary microbiology.

[31]  E. Martínez-Romero,et al.  Classification and nomenclature of Agrobacterium and Rhizobium - A reply to Farrand et al. (2003) , 2003 .

[32]  A. Widmer,et al.  Molecular Typing of Methicillin-Resistant Staphylococcus aureus: Can PCR Replace Pulsed-Field Gel Electrophoresis? , 2003, Journal of Clinical Microbiology.

[33]  J. Labadie,et al.  Agrobacterium radiobacter as a Cause of Pseudobacteremia , 1999, Infection Control & Hospital Epidemiology.

[34]  R. Manfredi,et al.  Agrobacterium radiobacter Pneumonia in a patient with HIV infection , 1996, European Journal of Clinical Microbiology and Infectious Diseases.

[35]  G. Plotkin Agrobacterium radiobacter prosthetic valve endocarditis. , 1980, Annals of internal medicine.

[36]  Y. Glupczynski,et al.  Epidemiological investigation of a nosocomial outbreak of multidrug-resistant Corynebacterium striatum at one Belgian university hospital. , 2014, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

[37]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[38]  P. Hsueh,et al.  Clinical and microbiological characteristics of Rhizobium radiobacter infections. , 2004, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[39]  Hilde van der Togt,et al.  Publisher's Note , 2003, J. Netw. Comput. Appl..