Towards high-throughput metabolomics using ultrahigh-field Fourier transform ion cyclotron resonance mass spectrometry

[1]  A. Marshall,et al.  Scaling MS plateaus with high-resolution FT-ICRMS. , 2002, Analytical chemistry.

[2]  Ichiro Yuyama,et al.  Dynamic Range Expansion using a CMD Imager. , 2000 .

[3]  Masaru Tomita,et al.  Simultaneous determination of the main metabolites in rice leaves using capillary electrophoresis mass spectrometry and capillary electrophoresis diode array detection. , 2004, The Plant journal : for cell and molecular biology.

[4]  D. Kell,et al.  Metabolomics by numbers: acquiring and understanding global metabolite data. , 2004, Trends in biotechnology.

[5]  G. Kruppa,et al.  Metabolomics applications of FT-ICR mass spectrometry. , 2005, Mass spectrometry reviews.

[6]  W. R. Wikoff,et al.  Metabolomics identifies perturbations in human disorders of propionate metabolism. , 2007, Clinical chemistry.

[7]  D. Kell,et al.  High-throughput classification of yeast mutants for functional genomics using metabolic footprinting , 2003, Nature Biotechnology.

[8]  E. Galinski,et al.  Osmoadaptation in bacteria. , 1995, Advances in microbial physiology.

[9]  M. Hirai,et al.  Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor. , 2005, The Plant journal : for cell and molecular biology.

[10]  O. Fiehn,et al.  Mass spectrometry-based metabolic profiling reveals different metabolite patterns in invasive ovarian carcinomas and ovarian borderline tumors. , 2006, Cancer research.

[11]  Oliver A.H. Jones,et al.  A metabolomics based approach to assessing the toxicity of the polyaromatic hydrocarbon pyrene to the earthworm Lumbricus rubellus. , 2008, Chemosphere.

[12]  Ying Zhang,et al.  HMDB: the Human Metabolome Database , 2007, Nucleic Acids Res..

[13]  Theodoros N. Arvanitis,et al.  Dynamic range and mass accuracy of wide-scan direct infusion nanoelectrospray fourier transform ion cyclotron resonance mass spectrometry-based metabolomics increased by the spectral stitching method. , 2007, Analytical chemistry.

[14]  J. Swenberg,et al.  Quantitation of choline and its metabolites in tissues and foods by liquid chromatography/electrospray ionization-isotope dilution mass spectrometry. , 2002, Analytical chemistry.

[15]  G. Siuzdak,et al.  Solvent-dependent metabolite distribution, clustering, and protein extraction for serum profiling with mass spectrometry. , 2006, Analytical chemistry.

[16]  Andrew N Lane,et al.  The promise of metabolomics in cancer molecular therapeutics. , 2004, Current opinion in molecular therapeutics.

[17]  Paul H. Gamache,et al.  Metabolomic applications of electrochemistry/Mass spectrometry , 2004, Journal of the American Society for Mass Spectrometry.

[18]  S. Zeisel,et al.  Measurement of choline and choline metabolite concentrations using high-pressure liquid chromatography and gas chromatography-mass spectrometry. , 1989, Analytical biochemistry.

[19]  Eoin Fahy,et al.  LIPID MAPS online tools for lipid research , 2007, Nucleic Acids Res..

[20]  Susumu Goto,et al.  KEGG: Kyoto Encyclopedia of Genes and Genomes , 2000, Nucleic Acids Res..

[21]  J. Lindon,et al.  'Metabonomics': understanding the metabolic responses of living systems to pathophysiological stimuli via multivariate statistical analysis of biological NMR spectroscopic data. , 1999, Xenobiotica; the fate of foreign compounds in biological systems.

[22]  M. Tomita,et al.  Differential Metabolomics Reveals Ophthalmic Acid as an Oxidative Stress Biomarker Indicating Hepatic Glutathione Consumption* , 2006, Journal of Biological Chemistry.

[23]  W. Dunn,et al.  Measuring the metabolome: current analytical technologies. , 2005, The Analyst.

[24]  E. Varesio,et al.  The combination of liquid chromatography/tandem mass spectrometry and chip-based infusion for improved screening and characterization of drug metabolites. , 2005, Rapid communications in mass spectrometry : RCM.

[25]  D. Botstein,et al.  Cluster analysis and display of genome-wide expression patterns. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[26]  Akira Oikawa,et al.  Differential metabolomics unraveling light/dark regulation of metabolic activities in Arabidopsis cell culture , 2007, Planta.

[27]  A. Marshall,et al.  Resolution of 11,000 compositionally distinct components in a single electrospray ionization Fourier transform ion cyclotron resonance mass spectrum of crude oil. , 2002, Analytical chemistry.

[28]  S. Kanaya,et al.  Metabolic profiling using Fourier-transform ion-cyclotron-resonance mass spectrometry , 2007, Analytical and bioanalytical chemistry.

[29]  Walter Kolch,et al.  The molecular make-up of a tumour: proteomics in cancer research. , 2005, Clinical science.

[30]  Alok J. Saldanha,et al.  Java Treeview - extensible visualization of microarray data , 2004, Bioinform..

[31]  Oliver Fiehn,et al.  Metabolomic database annotations via query of elemental compositions: Mass accuracy is insufficient even at less than 1 ppm , 2006, BMC Bioinformatics.

[32]  David W. Russell,et al.  LMSD: LIPID MAPS structure database , 2006, Nucleic Acids Res..

[33]  J. Keurentjes,et al.  Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry , 2007, Nature Protocols.

[34]  中尾 光輝,et al.  KEGG(Kyoto Encyclopedia of Genes and Genomes)〔和文〕 (特集 ゲノム医学の現在と未来--基礎と臨床) -- (データベース) , 2000 .

[35]  O. Fiehn,et al.  Integrated studies on plant biology using multiparallel techniques. , 2001, Current opinion in biotechnology.

[36]  H. Woo,et al.  Metabolomic approach to evaluate the toxicological effects of nonylphenol with rat urine. , 2007, Analytical chemistry.

[37]  O. Neubauer.  Ueber Glykuronsäurepaarung bei Stoffen der Fettreihe , 1901, Archiv für experimentelle Pathologie und Pharmakologie.

[38]  Oliver Fiehn,et al.  Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry , 2007, BMC Bioinformatics.

[39]  Iain Beattie,et al.  Ultra-performance liquid chromatography coupled to quadrupole-orthogonal time-of-flight mass spectrometry. , 2004, Rapid communications in mass spectrometry : RCM.

[40]  M. Hirai,et al.  Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[41]  G. Anderson,et al.  Dynamic range expansion applied to mass spectrometry based on data-dependent selective ion ejection in capillary liquid chromatography fourier transform ion cyclotron resonance for enhanced proteome characterization. , 2001, Analytical chemistry.

[42]  S. Stein,et al.  Deconvolution gas chromatography/mass spectrometry of urinary organic acids--potential for pattern recognition and automated identification of metabolic disorders. , 1999, Rapid communications in mass spectrometry : RCM.

[43]  D. Goodenowe,et al.  Nontargeted metabolome analysis by use of Fourier Transform Ion Cyclotron Mass Spectrometry. , 2002, Omics : a journal of integrative biology.

[44]  R. Takors,et al.  Quantification of intracellular metabolites in Escherichia coli K12 using liquid chromatographic-electrospray ionization tandem mass spectrometric techniques. , 2001, Analytical biochemistry.