Ultraviolet Photodissociation for Non-Target Screening-Based Identification of Organic Micro-Pollutants in Water Samples

Non-target screening (NTS) based on the combination of liquid chromatography coupled to high-resolution mass spectrometry has become the key method to identify organic micro-pollutants (OMPs) in water samples. However, a large number of compounds remains unidentified with current NTS approaches due to poor quality fragmentation spectra generated by suboptimal fragmentation methods. Here, the potential of the alternative fragmentation technique ultraviolet photodissociation (UVPD) to improve identification of OMPs in water samples was investigated. A diverse set of water-relevant OMPs was selected based on k-means clustering and unsupervised artificial neural networks. The selected OMPs were analyzed using an Orbitrap Fusion Lumos equipped with UVPD. Therewith, information-rich MS2 fragmentation spectra of compounds that fragment poorly with higher-energy collisional dissociation (HCD) could be attained. Development of an R-based data analysis workflow and user interface facilitated the characterization and comparison of HCD and UVPD fragmentation patterns. UVPD and HCD generated both unique and common fragments, demonstrating that some fragmentation pathways are specific to the respective fragmentation method, while others seem more generic. Application of UVPD fragmentation to the analysis of surface water enabled OMP identification using existing HCD spectral libraries. However, high-throughput applications still require optimization of informatics workflows and spectral libraries tailored to UVPD.

[1]  J. A. Hartigan,et al.  A k-means clustering algorithm , 1979 .

[2]  Teuvo Kohonen,et al.  Essentials of the self-organizing map , 2013, Neural Networks.

[3]  Christian Panse,et al.  protViz: Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics , 2014 .

[4]  Christian Panse,et al.  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics [R package protViz version 0.6.8] , 2020 .

[5]  Agnes L Karmaus,et al.  Evaluation of food-relevant chemicals in the ToxCast high-throughput screening program. , 2016, Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association.

[6]  J. Brodbelt,et al.  UVliPiD: A UVPD-Based Hierarchical Approach for De Novo Characterization of Lipid A Structures. , 2016, Analytical chemistry.

[7]  Rajarshi Guha,et al.  Chemical Informatics Functionality in R , 2007 .

[8]  Christian Panse,et al.  rawDiag: An R Package Supporting Rational LC-MS Method Optimization for Bottom-up Proteomics. , 2018, Journal of proteome research.

[9]  Jennifer S Brodbelt,et al.  Photodissociation mass spectrometry: new tools for characterization of biological molecules. , 2014, Chemical Society reviews.

[10]  M. Braga,et al.  Exploratory Data Analysis , 2018, Encyclopedia of Social Network Analysis and Mining. 2nd Ed..

[11]  Emma L. Schymanski,et al.  MetFrag relaunched: incorporating strategies beyond in silico fragmentation , 2016, Journal of Cheminformatics.

[12]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[13]  Emma L. Schymanski,et al.  Nontarget Screening with High Resolution Mass Spectrometry in the Environment: Ready to Go? , 2017, Environmental science & technology.

[14]  Malika Charrad,et al.  NbClust: An R Package for Determining the Relevant Number of Clusters in a Data Set , 2014 .