VAP: a versatile aggregate profiler for efficient genome-wide data representation and discovery
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François Robert | Pierre-Étienne Jacques | Marc-André Lavoie | Mylène Brunelle | Christian Poitras | Alexei Nordell Markovits | Charles Coulombe | F. Robert | Mylène Brunelle | P. Jacques | Christian Poitras | M. Lavoie | Charles Coulombe
[1] Bing Li,et al. Histone H3 Lysine 36 Dimethylation (H3K36me2) Is Sufficient to Recruit the Rpd3s Histone Deacetylase Complex and to Repress Spurious Transcription* , 2009, Journal of Biological Chemistry.
[2] Jun Song,et al. CEAS: cis-regulatory element annotation system , 2006, Nucleic Acids Res..
[3] J. Ahringer,et al. Differential chromatin marking of introns and expressed exons by H3K36me3 , 2008, Nature Genetics.
[4] Edith D. Wong,et al. Saccharomyces Genome Database: the genomics resource of budding yeast , 2011, Nucleic Acids Res..
[5] David Haussler,et al. The Human Epigenome Browser at Washington University , 2011, Nature Methods.
[6] Xin Li,et al. Chemical-genomic dissection of the CTD code , 2010, Nature Structural &Molecular Biology.
[7] C. Glass,et al. Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation , 2013, Nature.
[8] Pierre-Étienne Jacques,et al. Yeast RNase III triggers polyadenylation-independent transcription termination. , 2009, Molecular cell.
[9] ENCODEConsortium,et al. An Integrated Encyclopedia of DNA Elements in the Human Genome , 2012, Nature.
[10] Lucas Lochovsky,et al. ACT: aggregation and correlation toolbox for analyses of genome tracks , 2011, Bioinform..
[11] Pierre-Étienne Jacques,et al. The Euchromatic and Heterochromatic Landscapes Are Shaped by Antagonizing Effects of Transcription on H2A.Z Deposition , 2009, PLoS genetics.
[12] F. Robert,et al. Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1. , 2007, Molecular cell.
[13] G. Hong,et al. Nucleic Acids Research , 2015, Nucleic Acids Research.
[14] Brian D. Strahl,et al. Dimethylation of Histone H3 at Lysine 36 DemarcatesRegulatory and Nonregulatory ChromatinGenome-Wide , 2005, Molecular and Cellular Biology.
[15] Michael R. Green,et al. Dissecting the Regulatory Circuitry of a Eukaryotic Genome , 1998, Cell.
[16] Matthew W Vaughn,et al. The Fission Yeast Jmj2 Reverses Histone H3 Lysine 4 Trimethylation* , 2007, Journal of Biological Chemistry.
[17] Mathieu Blanchette,et al. Variant Histone H2A.Z Is Globally Localized to the Promoters of Inactive Yeast Genes and Regulates Nucleosome Positioning , 2005, PLoS biology.
[18] Bing Li,et al. Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription. , 2007, Genes & development.
[19] J. Corden,et al. RNA polymerase II C-terminal domain: Tethering transcription to transcript and template. , 2013, Chemical reviews.
[20] Data production leads,et al. An integrated encyclopedia of DNA elements in the human genome , 2012 .
[21] Dirk Eick,et al. The RNA polymerase II carboxy-terminal domain (CTD) code. , 2013, Chemical reviews.
[22] Raymond K. Auerbach,et al. An Integrated Encyclopedia of DNA Elements in the Human Genome , 2012, Nature.
[23] Andrew B. Nobel,et al. The Set2/Rpd3S Pathway Suppresses Cryptic Transcription without Regard to Gene Length or Transcription Frequency , 2009, PloS one.
[24] Pierre-Étienne Jacques,et al. A Positive Feedback Loop Links Opposing Functions of P-TEFb/Cdk9 and Histone H2B Ubiquitylation to Regulate Transcript Elongation in Fission Yeast , 2012, PLoS genetics.
[25] Luc Gaudreau,et al. Histone H2A.Z is essential for estrogen receptor signaling. , 2009, Genes & development.
[26] Pierre-Étienne Jacques,et al. DSIF and RNA Polymerase II CTD Phosphorylation Coordinate the Recruitment of Rpd3S to Actively Transcribed Genes , 2010, PLoS genetics.
[27] F. Robert,et al. Control of Chromatin Structure by Spt6: Different Consequences in Coding and Regulatory Regions , 2010, Molecular and Cellular Biology.
[28] G. Ast,et al. Chromatin organization marks exon-intron structure , 2009, Nature Structural &Molecular Biology.
[29] Pierre-Étienne Jacques,et al. Systematic identification of fragile sites via genome-wide location analysis of γ-H2AX , 2010, Nature Structural &Molecular Biology.
[30] G. Bourque,et al. The Majority of Primate-Specific Regulatory Sequences Are Derived from Transposable Elements , 2013, PLoS genetics.
[31] F. Robert,et al. The writers, readers, and functions of the RNA polymerase II C-terminal domain code. , 2013, Chemical reviews.
[32] Clifford A. Meyer,et al. Cistrome: an integrative platform for transcriptional regulation studies , 2011, Genome Biology.
[33] Megan F. Cole,et al. Genome-wide Map of Nucleosome Acetylation and Methylation in Yeast , 2005, Cell.
[34] Tom H. Pringle,et al. The human genome browser at UCSC. , 2002, Genome research.
[35] Pierre-Étienne Jacques,et al. A universal RNA polymerase II CTD cycle is orchestrated by complex interplays between kinase, phosphatase, and isomerase enzymes along genes. , 2012, Molecular cell.
[36] Tao Ye,et al. seqMINER: an integrated ChIP-seq data interpretation platform , 2010, Nucleic acids research.
[37] Johannes Söding,et al. Uniform transitions of the general RNA polymerase II transcription complex , 2010, Nature Structural &Molecular Biology.
[38] Mark Johnston,et al. Linking cell cycle to histone modifications: SBF and H2B monoubiquitination machinery and cell-cycle regulation of H3K79 dimethylation. , 2009, Molecular cell.
[39] Clifford A. Meyer,et al. Model-based Analysis of ChIP-Seq (MACS) , 2008, Genome Biology.
[40] Petra C. Schwalie,et al. A CTCF-independent role for cohesin in tissue-specific transcription. , 2010, Genome research.
[41] Bing Li,et al. Combined Action of PHD and Chromo Domains Directs the Rpd3S HDAC to Transcribed Chromatin , 2007, Science.
[42] Dindial Ramotar,et al. The Peptidyl Prolyl Isomerase Rrd1 Regulates the Elongation of RNA Polymerase II during Transcriptional Stresses , 2011, PloS one.
[43] Krishnamurthy Natarajan,et al. Set2 methylation of histone H3 lysine 36 suppresses histone exchange on transcribed genes , 2012, Nature.
[44] N. D. Clarke,et al. Dynamic Deposition of Histone Variant H3.3 Accompanies Developmental Remodeling of the Arabidopsis Transcriptome , 2012, PLoS genetics.