Cold‐induced calreticulin OsCRT3 conformational changes promote OsCIPK7 binding and temperature sensing in rice

Unusually low temperatures caused by global climate change adversely affect rice production. Sensing cold to trigger signal network is a key base for improvement of chilling tolerance trait. Here, we report that Oryza sativa Calreticulin 3 (OsCRT3) localized at the endoplasmic reticulum (ER) exhibits conformational changes under cold stress, thereby enhancing its interaction with CBL‐interacting protein kinase 7 (OsCIPK7) to sense cold. Phenotypic analyses of OsCRT3 knock‐out mutants and transgenic overexpression lines demonstrate that OsCRT3 is a positive regulator in chilling tolerance. OsCRT3 localizes at the ER and mediates increases in cytosolic calcium levels under cold stress. Notably, cold stress triggers secondary structural changes of OsCRT3 and enhances its binding affinity with OsCIPK7, which finally boosts its kinase activity. Moreover, Calcineurin B‐like protein 7 (OsCBL7) and OsCBL8 interact with OsCIPK7 specifically on the plasma membrane. Taken together, our results thus identify a cold‐sensing mechanism that simultaneously conveys cold‐induced protein conformational change, enhances kinase activity, and Ca2+ signal generation to facilitate chilling tolerance in rice.

[1]  Hong Yu,et al.  A genetic module at one locus in rice protects chloroplasts to enhance thermotolerance , 2022, Science.

[2]  Zizhao Zhang,et al.  POD1-SUN-CRT3 chaperone complex guards the ER sorting of LRR receptor kinases in Arabidopsis , 2022, Nature Communications.

[3]  Y. Weng,et al.  The mechanism for thermal-enhanced chaperone-like activity of α-crystallin against UV irradiation-induced aggregation of γD-crystallin. , 2022, Biophysical journal.

[4]  Hong-Xuan Lin,et al.  TT2 controls rice thermotolerance through SCT1-dependent alteration of wax biosynthesis , 2021, Nature Plants.

[5]  Y. Qi,et al.  A calmodulin-binding transcription factor links calcium signaling to antiviral RNAi defense in plants. , 2021, Cell host & microbe.

[6]  Oriol Vinyals,et al.  Highly accurate protein structure prediction with AlphaFold , 2021, Nature.

[7]  I. Egea,et al.  The Ca2+ Sensor Calcineurin B–Like Protein 10 in Plants: Emerging New Crucial Roles for Plant Abiotic Stress Tolerance , 2021, Frontiers in Plant Science.

[8]  Shanshan Zhu,et al.  Transcriptional Activation and Phosphorylation of OsCNGC9 Confer Enhanced Chilling Tolerance in Rice. , 2020, Molecular plant.

[9]  Yan Guo,et al.  The GSK3-like Kinase BIN2 Is a Molecular Switch between the Salt Stress Response and Growth Recovery in Arabidopsis thaliana. , 2020, Developmental cell.

[10]  Z. Gong,et al.  The CBL–CIPK Pathway in Plant Response to Stress Signals , 2020, International journal of molecular sciences.

[11]  Hao Li,et al.  Dynamical and allosteric regulation of photoprotection in light harvesting complex II , 2020, Science China Chemistry.

[12]  Nana Li,et al.  Characterization of CBL-CIPK signaling complexes and their involvement in cold response in tea plant. , 2020, Plant physiology and biochemistry : PPB.

[13]  S. Luan,et al.  The CBL-CIPK Calcium Signaling Network: Unified Paradigm from 20 Years of Discoveries. , 2020, Trends in plant science.

[14]  Wei Tang,et al.  Role of the Arabidopsis calcineurin B-like protein-interacting protein kinase CIPK21 in plant cold stress tolerance , 2020, Plant Biotechnology Reports.

[15]  Yingdian Wang,et al.  Intraorganellar calcium imaging in Arabidopsis seedling roots using the GCaMP variants GCaMP6m and R-CEPIA1er. , 2020, Journal of plant physiology.

[16]  K. Chong,et al.  OsCIPK7 point-mutation leads to conformation and kinase-activity change for sensing cold response. , 2019, Journal of integrative plant biology.

[17]  K. Chong,et al.  Crop Improvement Through Temperature Resilience. , 2019, Annual review of plant biology.

[18]  Yi Wang,et al.  The SOS2-SCaBP8 Complex Generates and Fine-Tunes an AtANN4-Dependent Calcium Signature under Salt Stress. , 2019, Developmental cell.

[19]  K. Chong,et al.  Cold signaling in plants: Insights into mechanisms and regulation. , 2018, Journal of integrative plant biology.

[20]  J. Kudla,et al.  Advances and current challenges in calcium signaling. , 2018, The New phytologist.

[21]  Jian-Min Zhou,et al.  Luciferase Complementation Assay for Protein-Protein Interactions in Plants. , 2018, Current protocols in plant biology.

[22]  Jian‐Kang Zhu Abiotic Stress Signaling and Responses in Plants , 2016, Cell.

[23]  G. Gao,et al.  Ebola Viral Glycoprotein Bound to Its Endosomal Receptor Niemann-Pick C1 , 2016, Cell.

[24]  Yulong Su,et al.  The Calcium Sensor CBL-CIPK Is Involved in Plant's Response to Abiotic Stresses , 2015, International journal of genomics.

[25]  G. Pandey,et al.  The CBL-CIPK signaling module in plants: a mechanistic perspective. , 2015, Physiologia plantarum.

[26]  Amita Pandey,et al.  Calcineurin B-Like Protein-Interacting Protein Kinase CIPK21 Regulates Osmotic and Salt Stress Responses in Arabidopsis1 , 2015, Plant Physiology.

[27]  Jun Xiao,et al.  COLD1 Confers Chilling Tolerance in Rice , 2015, Cell.

[28]  S. Roy,et al.  The role of the CBL–CIPK calcium signalling network in regulating ion transport in response to abiotic stress , 2015, Plant Growth Regulation.

[29]  Paula Ragel,et al.  Structural basis of the regulatory mechanism of the plant CIPK family of protein kinases controlling ion homeostasis and abiotic stress , 2014, Proceedings of the National Academy of Sciences.

[30]  J. Kudla,et al.  Analyses of Ca2+ Accumulation and Dynamics in the Endoplasmic Reticulum of Arabidopsis Root Cells Using a Genetically Encoded Cameleon Sensor1[C][W] , 2013, Plant Physiology.

[31]  Leonie Steinhorst,et al.  Calcium and Reactive Oxygen Species Rule the Waves of Signaling1 , 2013, Plant Physiology.

[32]  J. Kudla,et al.  Analyses of Ca 2 + Accumulation and Dynamics in the Endoplasmic Reticulum of Arabidopsis Root Cells Using a Genetically Encoded Cameleon Sensor 1 [ C ] [ W ] , 2013 .

[33]  M. Madesh,et al.  STIM proteins: dynamic calcium signal transducers , 2012, Nature Reviews Molecular Cell Biology.

[34]  L. Du,et al.  A dual regulatory role of Arabidopsis calreticulin-2 in plant innate immunity. , 2012, The Plant journal : for cell and molecular biology.

[35]  J. Kudla,et al.  FRET-based genetically encoded sensors allow high-resolution live cell imaging of Ca²⁺ dynamics. , 2012, The Plant journal : for cell and molecular biology.

[36]  Tong Wang,et al.  POD1 Regulates Pollen Tube Guidance in Response to Micropylar Female Signaling and Acts in Early Embryo Patterning in Arabidopsis[W][OA] , 2011, Plant Cell.

[37]  S. Chen,et al.  The Arabidopsis Chaperone J3 Regulates the Plasma Membrane H+-ATPase through Interaction with the PKS5 Kinase[C][W] , 2010, Plant Cell.

[38]  Z. Hong,et al.  A plant-specific calreticulin is a key retention factor for a defective brassinosteroid receptor in the endoplasmic reticulum , 2009, Proceedings of the National Academy of Sciences.

[39]  Runzhi Li,et al.  Calreticulin: conserved protein and diverse functions in plants. , 2009, Physiologia plantarum.

[40]  J. Kudla,et al.  Plant calcineurin B-like proteins and their interacting protein kinases. , 2009, Biochimica et biophysica acta.

[41]  M. Michalak,et al.  Calreticulin, a multi-process calcium-buffering chaperone of the endoplasmic reticulum. , 2009, The Biochemical journal.

[42]  J. Kudla,et al.  Multicolor bimolecular fluorescence complementation reveals simultaneous formation of alternative CBL/CIPK complexes in planta. , 2008, The Plant journal : for cell and molecular biology.

[43]  Wenying Xu,et al.  Calcineurin B-like interacting protein kinase OsCIPK23 functions in pollination and drought stress responses in rice (Oryza sativa L.). , 2008, Journal of genetics and genomics = Yi chuan xue bao.

[44]  Hongsheng Zhang,et al.  Expression analysis of the calcineurin B-like gene family in rice (Oryza sativa L.) under environmental stresses. , 2008, Gene.

[45]  J. Kudla,et al.  In Planta Visualization of Protein Interactions Using Bimolecular Fluorescence Complementation (BiFC). , 2008, CSH protocols.

[46]  X. Chang,et al.  Molecular cloning and characterization of wheat calreticulin (CRT) gene involved in drought-stressed responses. , 2008, Journal of experimental botany.

[47]  L. Xiong,et al.  Characterization of Stress-Responsive CIPK Genes in Rice for Stress Tolerance Improvement1[W] , 2007, Plant Physiology.

[48]  Hiroaki Fujii,et al.  The structure of the C-terminal domain of the protein kinase AtSOS2 bound to the calcium sensor AtSOS3. , 2007, Molecular cell.

[49]  M. Michalak,et al.  Calreticulin, Ca2+, and calcineurin - signaling from the endoplasmic reticulum. , 2004, Molecules and cells.

[50]  S. Wyatt,et al.  Expression of the high capacity calcium-binding domain of calreticulin increases bioavailable calcium stores in plants , 2002, Transgenic Research.

[51]  J. Parker,et al.  Identification of an N-domain Histidine Essential for Chaperone Function in Calreticulin* , 2003, Journal of Biological Chemistry.

[52]  U. Halfter,et al.  A novel domain in the protein kinase SOS2 mediates interaction with the protein phosphatase 2C ABI2 , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[53]  J. J. Grant,et al.  CBL1, a Calcium Sensor That Differentially Regulates Salt, Drought, and Cold Responses in Arabidopsis Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.012393. , 2003, The Plant Cell Online.

[54]  G. An,et al.  T-DNA Insertional Mutagenesis for Activation Tagging in Rice1 , 2002, Plant Physiology.

[55]  K. Krause,et al.  Functional specialization of calreticulin domains , 2001, The Journal of cell biology.

[56]  W. F. Thompson,et al.  The Ca(2+) status of the endoplasmic reticulum is altered by induction of calreticulin expression in transgenic plants. , 2001, Plant physiology.

[57]  M. Ishitani,et al.  Molecular Characterization of Functional Domains in the Protein Kinase SOS2 That Is Required for Plant Salt Tolerance , 2001, The Plant Cell Online.

[58]  K. Harter,et al.  The NAF domain defines a novel protein–protein interaction module conserved in Ca2+‐regulated kinases , 2001, The EMBO journal.

[59]  B. Walz,et al.  Endoplasmic reticulum of animal cells and its organization into structural and functional domains. , 2001, International review of cytology.

[60]  S. Luan,et al.  Interaction specificity of Arabidopsis calcineurin B-like calcium sensors and their target kinases. , 2000, Plant physiology.

[61]  M. Michalak,et al.  Calcium, a signaling molecule in the endoplasmic reticulum? , 2000, Trends in biochemical sciences.

[62]  K. Jung,et al.  T-DNA insertional mutagenesis for functional genomics in rice. , 2000, The Plant journal : for cell and molecular biology.

[63]  M. Ishitani,et al.  The Arabidopsis SOS2 protein kinase physically interacts with and is activated by the calcium-binding protein SOS3. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[64]  M Opas,et al.  Calreticulin: one protein, one gene, many functions. , 1999, The Biochemical journal.

[65]  F. Baluška,et al.  Maize calreticulin localizes preferentially to plasmodesmata in root apex. , 1999, The Plant journal : for cell and molecular biology.

[66]  K. Adler,et al.  Calreticulin expression in plant cells: developmental regulation, tissue specificity and intracellular distribution , 1998, Planta.

[67]  A. Trewavas,et al.  Ca2+ signalling in plant cells: the big network! , 1998, Current opinion in plant biology.

[68]  M. Michalak,et al.  Calreticulin modulates cell adhesiveness via regulation of vinculin expression , 1996, The Journal of cell biology.

[69]  K. Krause,et al.  Overexpression of Calreticulin Increases Intracellular Ca Storage and Decreases Store-operated Ca Influx (*) , 1996, The Journal of Biological Chemistry.

[70]  T. Komari,et al.  Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA. , 1994, The Plant journal : for cell and molecular biology.

[71]  S. Dedhar Novel functions for calreticulin: interaction with integrins and modulation of gene expression? , 1994, Trends in biochemical sciences.