Molecular evidence for novel mercury methylating microorganisms in sulfate-impacted lakes

[1]  C. Gilmour,et al.  Robust Mercury Methylation across Diverse Methanogenic Archaea , 2018, mBio.

[2]  D. Nemergut,et al.  Oligotrophic wetland sediments susceptible to shifts in microbiomes and mercury cycling with dissolved organic matter addition , 2018, PeerJ.

[3]  N. Selin,et al.  A review of global environmental mercury processes in response to human and natural perturbations: Changes of emissions, climate, and land use , 2018, Ambio.

[4]  S. Bertilsson,et al.  Geobacteraceae are important members of mercury-methylating microbial communities of sediments impacted by waste water releases , 2018, The ISME Journal.

[5]  Daniel S. Jones,et al.  Novel Microbial Assemblages Dominate Weathered Sulfide-Bearing Rock from Copper-Nickel Deposits in the Duluth Complex, Minnesota, USA , 2017, Applied and Environmental Microbiology.

[6]  P. Pevzner,et al.  metaSPAdes: a new versatile metagenomic assembler. , 2017, Genome research.

[7]  D. Engstrom,et al.  Influence of porewater sulfide on methylmercury production and partitioning in sulfate-impacted lake sediments. , 2017, The Science of the total environment.

[8]  V. Slaveykova,et al.  Influence of chemical speciation and biofilm composition on mercury accumulation by freshwater biofilms. , 2017, Environmental science. Processes & impacts.

[9]  I-Min A. Chen,et al.  IMG/M: integrated genome and metagenome comparative data analysis system , 2016, Nucleic Acids Res..

[10]  Y. Igarashi,et al.  Mercury-methylating genes dsrB and hgcA in soils/sediments of the Three Gorges Reservoir , 2017, Environmental Science and Pollution Research.

[11]  Lauren K. Redfern,et al.  Impacts of coal ash on methylmercury production and the methylating microbial community in anaerobic sediment slurries. , 2016, Environmental science. Processes & impacts.

[12]  Brian C. Thomas,et al.  Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system , 2016, Nature Communications.

[13]  D. Engstrom,et al.  Experimental sulfate amendment alters peatland bacterial community structure. , 2016, The Science of the total environment.

[14]  Mark B. Schultz,et al.  Microbial mercury methylation in Antarctic sea ice , 2016, Nature Microbiology.

[15]  Dan Knights,et al.  Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies , 2016, Nature Biotechnology.

[16]  C. Gilmour,et al.  Development and Validation of Broad-Range Qualitative and Clade-Specific Quantitative Molecular Probes for Assessing Mercury Methylation in the Environment , 2016, Applied and Environmental Microbiology.

[17]  Chu-Ching Lin,et al.  Investigation of biogeochemical controls on the formation, uptake and accumulation of methylmercury in rice paddies in the vicinity of a coal-fired power plant and a municipal solid waste incinerator in Taiwan. , 2016, Chemosphere.

[18]  D. Engstrom,et al.  Methylmercury production in a chronically sulfate-impacted sub-boreal wetland. , 2016, Environmental science. Processes & impacts.

[19]  S. Spring,et al.  Characterization of the first cultured representative of Verrucomicrobia subdivision 5 indicates the proposal of a novel phylum , 2016, The ISME Journal.

[20]  Blake A. Simmons,et al.  MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets , 2016, Bioinform..

[21]  E. Björn,et al.  Persistent Hg contamination and occurrence of Hg-methylating transcript (hgcA) downstream of a chlor-alkali plant in the Olt River (Romania) , 2016, Environmental Science and Pollution Research.

[22]  Tom O. Delmont,et al.  Anvi’o: an advanced analysis and visualization platform for ‘omics data , 2015, PeerJ.

[23]  C. Gilmour,et al.  Global prevalence and distribution of genes and microorganisms involved in mercury methylation , 2015, Science Advances.

[24]  S. Guédron,et al.  High methylmercury production under ferruginous conditions in sediments impacted by sewage treatment plant discharges. , 2015, Water research.

[25]  Connor T. Skennerton,et al.  CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes , 2015, Genome research.

[26]  Jerry M. Parks,et al.  Site-Directed Mutagenesis of HgcA and HgcB Reveals Amino Acid Residues Important for Mercury Methylation , 2015, Applied and Environmental Microbiology.

[27]  F. Morel,et al.  Detection of a key Hg methylation gene, hgcA, in wetland soils. , 2014, Environmental microbiology reports.

[28]  H. Bae,et al.  Syntrophs Dominate Sequences Associated with the Mercury Methylation-Related Gene hgcA in the Water Conservation Areas of the Florida Everglades , 2014, Applied and Environmental Microbiology.

[29]  Torsten Seemann,et al.  Prokka: rapid prokaryotic genome annotation , 2014, Bioinform..

[30]  Ji‐Zheng He,et al.  Analysis of the Microbial Community Structure by Monitoring an Hg Methylation Gene (hgcA) in Paddy Soils along an Hg Gradient , 2014, Applied and Environmental Microbiology.

[31]  M. Picardeau The Family Leptospiraceae , 2014 .

[32]  J. Kristjánsson,et al.  31 The Family Hydrogenophilaceae , 2014 .

[33]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[34]  C. Gilmour,et al.  Mercury methylation by novel microorganisms from new environments. , 2013, Environmental science & technology.

[35]  Natalia N. Ivanova,et al.  Insights into the phylogeny and coding potential of microbial dark matter , 2013, Nature.

[36]  D. Streets,et al.  Legacy impacts of all‐time anthropogenic emissions on the global mercury cycle , 2013 .

[37]  Jerry M. Parks,et al.  The Genetic Basis for Bacterial Mercury Methylation , 2013, Science.

[38]  Heileen Hsu-Kim,et al.  Mechanisms regulating mercury bioavailability for methylating microorganisms in the aquatic environment: a critical review. , 2013, Environmental science & technology.

[39]  D. Engstrom,et al.  Methylmercury declines in a boreal peatland when experimental sulfate deposition decreases. , 2012, Environmental science & technology.

[40]  Steven L Salzberg,et al.  Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.

[41]  C. Gilmour,et al.  Dissolved organic matter enhances microbial mercury methylation under sulfidic conditions. , 2012, Environmental science & technology.

[42]  M. Berndt,et al.  Methylmercury and dissolved organic carbon relationships in a wetland-rich watershed impacted by elevated sulfate from mining. , 2012, Environmental pollution.

[43]  Yanping Wang,et al.  Methanogens: principal methylators of mercury in lake periphyton. , 2011, Environmental science & technology.

[44]  Marcel Martin Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .

[45]  C. Schadt,et al.  Sulfate-Reducing Bacterium Desulfovibrio desulfuricans ND132 as a Model for Understanding Bacterial Mercury Methylation , 2011, Applied and Environmental Microbiology.

[46]  Ramón Doallo,et al.  ProtTest 3: fast selection of best-fit models of protein evolution , 2011, Bioinform..

[47]  Denis Krompass,et al.  Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood , 2011, Systematic biology.

[48]  Robert A. Edwards,et al.  Quality control and preprocessing of metagenomic datasets , 2011, Bioinform..

[49]  Ramón Doallo,et al.  ProtTest-HPC: Fast Selection of Best-Fit Models of Protein Evolution , 2010, Euro-Par Workshops.

[50]  O. Gascuel,et al.  An improved general amino acid replacement matrix. , 2008, Molecular biology and evolution.

[51]  C. Gilmour,et al.  Methylmercury production in a Chesapeake Bay salt marsh , 2008 .

[52]  B. Branfireun,et al.  Assessing sulfate and carbon controls on net methylmercury production in peatlands: An in situ mesocosm approach , 2008 .

[53]  W. Ludwig,et al.  SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB , 2007, Nucleic acids research.

[54]  C. Gilmour,et al.  Mercury Methylation by Dissimilatory Iron-Reducing Bacteria , 2006, Applied and Environmental Microbiology.

[55]  Alexandros Stamatakis,et al.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models , 2006, Bioinform..

[56]  D. Engstrom,et al.  Sulfate addition increases methylmercury production in an experimental wetland. , 2006, Environmental science & technology.

[57]  Iain M. Wallace,et al.  M-Coffee: combining multiple sequence alignment methods with T-Coffee , 2006, Nucleic acids research.

[58]  D. Nelson,et al.  Mercury Methylation from Unexpected Sources: Molybdate-Inhibited Freshwater Sediments and an Iron-Reducing Bacterium , 2006, Applied and Environmental Microbiology.

[59]  Thomas Huber,et al.  Bellerophon: a program to detect chimeric sequences in multiple sequence alignments , 2004, Bioinform..

[60]  K. Schleifer,et al.  ARB: a software environment for sequence data. , 2004, Nucleic acids research.

[61]  O. Gascuel,et al.  A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. , 2003, Systematic biology.

[62]  A. Krogh,et al.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. , 2001, Journal of molecular biology.

[63]  R. D. Evans,et al.  Constants of mercury methylation and demethylation rates in sediments and comparison of tracer and ambient mercury availability , 2000 .

[64]  Nigel T. Roulet,et al.  In situ sulphate stimulation of mercury methylation in a boreal peatland: Toward a link between acid rain and methylmercury contamination in remote environments , 1999 .

[65]  H. Aldrich,et al.  Characterization of the anaerobic propionate-degrading syntrophs Smithella propionica gen. nov., sp. nov. and Syntrophobacter wolinii. , 1999, International journal of systematic bacteriology.

[66]  Andrew Heyes,et al.  Sulfide Controls on Mercury Speciation and Bioavailability to Methylating Bacteria in Sediment Pore Waters , 1999 .

[67]  Awwa,et al.  Standard Methods for the examination of water and wastewater , 1999 .

[68]  F. Morel,et al.  THE CHEMICAL CYCLE AND BIOACCUMULATION OF MERCURY , 1998 .

[69]  Thomas L. Madden,et al.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.

[70]  Ralph Mitchell,et al.  Sulfate stimulation of mercury methylation in freshwater sediments , 1992 .

[71]  William R. Taylor,et al.  The rapid generation of mutation data matrices from protein sequences , 1992, Comput. Appl. Biosci..

[72]  R. Bartha,et al.  Sulfate-Reducing Bacteria: Principal Methylators of Mercury in Anoxic Estuarine Sediment , 1985, Applied and environmental microbiology.