Real-Time Prediction of Brain Shift Using Nonlinear Finite Element Algorithms

Patient-specific biomechanical models implemented using specialized nonlinear (i.e., taking into account material and geometric nonlinearities) finite element procedures were applied to predict the deformation field within the brain for five cases of craniotomy-induced brain shift. The procedures utilize the Total Lagrangian formulation with explicit time stepping. The loading was defined by prescribing deformations on the brain surface under the craniotomy. Application of the computed deformation fields to register the preoperative images with the intraoperative ones indicated that the models very accurately predict the intraoperative positions and deformations of the brain anatomical structures for limited information about the brain surface deformations. For each case, it took less than 40 s to compute the deformation field using a standard personal computer, and less than 4 s using a Graphics Processing Unit (GPU). The results suggest that nonlinear biomechanical models can be regarded as one possible method of complementing medical image processing techniques when conducting non-rigid registration within the real-time constraints of neurosurgery.

[1]  K. Chinzei,et al.  Mechanical properties of brain tissue in tension. , 2002, Journal of biomechanics.

[2]  Karol Miller,et al.  Real-Time Nonlinear Finite Element Computations on GPU - Application to Neurosurgical Simulation. , 2010, Computer methods in applied mechanics and engineering.

[3]  K. Miller,et al.  Total Lagrangian explicit dynamics finite element algorithm for computing soft tissue deformation , 2006 .

[4]  Marco Viceconti,et al.  Automatic generation of finite element meshes from computed tomography data. , 2003, Critical reviews in biomedical engineering.

[5]  Vipin Chaudhary,et al.  Intraoperative brain shift prediction using a 3D inhomogeneous patient-specific finite element model. , 2007, Journal of neurosurgery.

[6]  James S. Duncan,et al.  Model-driven brain shift compensation , 2002, Medical Image Anal..

[7]  Karol Miller,et al.  Non-locking Tetrahedral Finite Element for Surgical Simulation. , 2009, Communications in numerical methods in engineering.

[8]  Karol Miller,et al.  An efficient hourglass control implementation for the uniform strain hexahedron using the Total Lagrangian formulation , 2007 .

[9]  Nicole M. Grosland,et al.  IA-FEMesh: An open-source, interactive, multiblock approach to anatomic finite element model development , 2009, Comput. Methods Programs Biomed..

[10]  Milan Sonka,et al.  Computer Vision Approaches to Medical Image Analysis, Second International ECCV Workshop, CVAMIA 2006, Graz, Austria, May 12, 2006 Revised Papers , 2006, CVAMIA.

[11]  Karol Miller,et al.  Patient-specific model of brain deformation: application to medical image registration. , 2007, Journal of biomechanics.

[12]  Mickael Tanter,et al.  Viscoelastic shear properties of in vivo breast lesions measured by MR elastography. , 2005, Magnetic resonance imaging.

[13]  O. Yeoh Some Forms of the Strain Energy Function for Rubber , 1993 .

[14]  K. Chinzei,et al.  Constitutive modelling of brain tissue: experiment and theory. , 1997, Journal of biomechanics.

[15]  M. Mallar Chakravarty,et al.  Towards a validation of atlas warping techniques , 2008, Medical Image Anal..

[16]  Ron Kikinis,et al.  Real-time registration of volumetric brain MRI by biomechanical simulation of deformation during image guided neurosurgery , 2002 .

[17]  Carl-Fredrik Westin,et al.  Capturing intraoperative deformations: research experience at Brigham and Women's hospital , 2005, Medical Image Anal..

[18]  Karol Miller,et al.  Realistic And Efficient Brain-Skull Interaction Model For Brain Shift Computation , 2008 .

[19]  K. Miller,et al.  On the unimportance of constitutive models in computing brain deformation for image-guided surgery , 2009, Biomechanics and modeling in mechanobiology.

[20]  Carlos Ortiz-de-Solorzano,et al.  Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization , 2006, CVAMIA.

[21]  Olivier Clatz,et al.  Non-rigid alignment of pre-operative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery , 2007, NeuroImage.

[22]  K. Paulsen,et al.  Intraoperative brain shift and deformation: a quantitative analysis of cortical displacement in 28 cases. , 1998, Neurosurgery.

[23]  Karol Miller,et al.  Suite of finite element algorithms for accurate computation of soft tissue deformation for surgical simulation , 2009, Medical Image Anal..