Long intervals of stasis punctuated by bursts of positive selection in the seasonal evolution of influenza A virus
暂无分享,去创建一个
Cecile Viboud | Eugene V Koonin | Yuri I Wolf | David J Lipman | Edward C Holmes | D. Lipman | E. Koonin | Y. Wolf | C. Viboud | E. Holmes
[1] S. Gould,et al. The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme , 1979, Proceedings of the Royal Society of London. Series B. Biological Sciences.
[2] I. Wilson,et al. Structural identification of the antibody-binding sites of Hong Kong influenza haemagglutinin and their involvement in antigenic variation , 1981, Nature.
[3] T Sonoguchi,et al. Cross-subtype protection in humans during sequential, overlapping, and/or concurrent epidemics caused by H3N2 and H1N1 influenza viruses. , 1985, The Journal of infectious diseases.
[4] N. Kolchanov,et al. [Phylogenetic analysis of genes of the influenza virus. Relationship between adaptability and neutrality]. , 1989, Genetika.
[5] D. Lipman,et al. Modelling neutral and selective evolution of protein folding , 1991, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[6] W. Fitch,et al. Positive Darwinian evolution in human influenza A viruses. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[7] N. Goldman,et al. A codon-based model of nucleotide substitution for protein-coding DNA sequences. , 1994, Molecular biology and evolution.
[8] T Gojobori,et al. Statistical analysis of nucleotide sequences of the hemagglutinin gene of human influenza A viruses. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[9] N. Cox,et al. Genetic variation in neuraminidase genes of influenza A (H3N2) viruses. , 1996, Virology.
[10] M. Huynen,et al. Smoothness within ruggedness: the role of neutrality in adaptation. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[11] J. Felsenstein. Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. , 1996, Methods in enzymology.
[12] Ziheng Yang,et al. PAML: a program package for phylogenetic analysis by maximum likelihood , 1997, Comput. Appl. Biosci..
[13] Katsuhiko Omoe,et al. Phylogenetic Analysis of the Entire Genome of Influenza A (H3N2) Viruses from Japan: Evidence for Genetic Reassortment of the Six Internal Genes , 1998, Journal of Virology.
[14] Recommended composition of influenza virus vaccines for use in the 1999-2000 season. , 1999, Releve epidemiologique hebdomadaire.
[15] W. Fitch,et al. Positive selection on the H3 hemagglutinin gene of human influenza virus A. , 1999, Molecular biology and evolution.
[16] A. Osterhaus,et al. Influenza virus: a master of metamorphosis. , 2000, The Journal of infection.
[17] M. Saraste,et al. FEBS Lett , 2000 .
[18] M. Coulthart,et al. Molecular evolution of influenza A/H3N2 viruses in the province of Québec (Canada) during the 1997-2000 period. , 2001, Virus research.
[19] B. Schweiger,et al. Antigenic drift and variability of influenza viruses , 2002, Medical Microbiology and Immunology.
[20] M. Hilleman,et al. Realities and enigmas of human viral influenza: pathogenesis, epidemiology and control. , 2002, Vaccine.
[21] Jonathan Dushoff,et al. Hemagglutinin sequence clusters and the antigenic evolution of influenza A virus , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[22] K. Stöhr,et al. Influenza--WHO cares. , 2002, The Lancet. Infectious diseases.
[23] L. Hurst. The Ka/Ks ratio: diagnosing the form of sequence evolution. , 2002, Trends in genetics : TIG.
[24] Recommended composition of influenza virus vaccines for use in the 2003-2004 influenza season. , 2003, Releve epidemiologique hebdomadaire.
[25] N. Ferguson,et al. Ecological and immunological determinants of influenza evolution , 2003, Nature.
[26] Rafael Sanjuán,et al. The contribution of epistasis to the architecture of fitness in an RNA virus. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[27] C. Petropoulos,et al. Evidence for Positive Epistasis in HIV-1 , 2004, Science.
[28] A. Lapedes,et al. Mapping the Antigenic and Genetic Evolution of Influenza Virus , 2004, Science.
[29] Robert C. Edgar,et al. MUSCLE: a multiple sequence alignment method with reduced time and space complexity , 2004, BMC Bioinformatics.
[30] Sergei L. Kosakovsky Pond,et al. Datamonkey: rapid detection of selective pressure on individual sites of codon alignments , 2005, Bioinform..
[31] I. Barr,et al. An influenza A(H3) reassortant was epidemic in Australia and New Zealand in 2003 , 2005, Journal of medical virology.
[32] Hong Jin,et al. Two residues in the hemagglutinin of A/Fujian/411/02-like influenza viruses are responsible for antigenic drift from A/Panama/2007/99. , 2005, Virology.
[33] Wenxin Wu,et al. Mismatched hemagglutinin and neuraminidase specificities in recent human H3N2 influenza viruses. , 2005, Virology.
[34] M. Deem,et al. Epitope analysis for influenza vaccine design. , 2004, Vaccine.
[35] S. Salzberg,et al. Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution , 2005, Nature.
[36] Bryan T Grenfell,et al. Whole-Genome Analysis of Human Influenza A Virus Reveals Multiple Persistent Lineages and Reassortment among Recent H3N2 Viruses , 2005, PLoS biology.
[37] A. Wagner. Robustness, evolvability, and neutrality , 2005, FEBS letters.
[38] E. Nobusawa,et al. Accumulation of Amino Acid Substitutions Promotes Irreversible Structural Changes in the Hemagglutinin of Human Influenza AH3 Virus during Evolution , 2005, Journal of Virology.
[39] Mark A. Miller,et al. Synchrony, Waves, and Spatial Hierarchies in the Spread of Influenza , 2006, Science.
[40] Christopher J. Lee,et al. Distinguishing HIV-1 drug resistance, accessory, and viral fitness mutations using conditional selection pressure analysis of treated versus untreated patient samples , 2006, Biology Direct.
[41] Cecile Viboud,et al. Stochastic Processes Are Key Determinants of Short-Term Evolution in Influenza A Virus , 2006, PLoS pathogens.
[42] Nigel F. Delaney,et al. Darwinian Evolution Can Follow Only Very Few Mutational Paths to Fitter Proteins , 2006, Science.
[43] S. Layne. Human Influenza Surveillance: the Demand to Expand , 2006, Emerging infectious diseases.
[44] S. Epstein. Prior H1N1 influenza infection and susceptibility of Cleveland Family Study participants during the H2N2 pandemic of 1957: an experiment of nature. , 2006, The Journal of infectious diseases.