Zebrafish chemical screening reveals an inhibitor of Dusp6 that expands cardiac cell lineages

The dual specificity phosphatase 6 (Dusp6) functions as a feedback regulator of fibroblast growth factor (FGF) signaling to limit the activity of extracellular signal regulated kinase (ERK) 1 and 2. We have identified a small molecule inhibitor of Dusp6, (E)-2-benzylidene-3-(cyclohexylamino)-2,3-dihydro-1H-inden-1-one (BCI), using a transgenic zebrafish chemical screen. BCI treatment blocked Dusp6 activity and enhanced FGF target gene expression in zebrafish embryos. Docking simulations predicted an allosteric binding site for BCI within the phosphatase domain. In vitro studies supported a model that BCI inhibits Dusp6 catalytic activation by ERK2 substrate binding. A temporal role for Dusp6 in restricting cardiac progenitors and controlling heart organ size was uncovered with BCI treatment at varying developmental stages. This study highlights the power of in vivo zebrafish chemical screens to identify novel compounds targeting Dusp6, a component of the FGF signaling pathway that has eluded traditional high-throughput in vitro screens.

[1]  Jae Hoon Kim,et al.  Crystal structure of the catalytic domain of human MAP kinase phosphatase 5: structural insight into constitutively active phosphatase. , 2006, Journal of molecular biology.

[2]  S. Keyse,et al.  Crystal structure of the MAPK phosphatase Pyst1 catalytic domain and implications for regulated activation , 1999, Nature Structural Biology.

[3]  P Willett,et al.  Development and validation of a genetic algorithm for flexible docking. , 1997, Journal of molecular biology.

[4]  Shuo Lin,et al.  Identification of novel vascular endothelial-specific genes by the microarray analysis of the zebrafish cloche mutants. , 2005, Blood.

[5]  David S. Goodsell,et al.  Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function , 1998, J. Comput. Chem..

[6]  Michael Tsang,et al.  Automated image‐based phenotypic analysis in zebrafish embryos , 2009, Developmental dynamics : an official publication of the American Association of Anatomists.

[7]  J. Smith,et al.  The Xenopus Brachyury promoter is activated by FGF and low concentrations of activin and suppressed by high concentrations of activin and by paired-type homeodomain proteins. , 1997, Genes & development.

[8]  S. Keyse,et al.  Isolation of the human genes encoding the pyst1 and Pyst2 phosphatases: characterisation of Pyst2 as a cytosolic dual-specificity MAP kinase phosphatase and its catalytic activation by both MAP and SAP kinases. , 1998, Journal of cell science.

[9]  M. Fishman,et al.  Genetics of heart development. , 2000, Trends in genetics : TIG.

[10]  C. Kimmel,et al.  FGF3 and FGF8 mediate a rhombomere 4 signaling activity in the zebrafish hindbrain. , 2002, Development.

[11]  P. Wipf,et al.  Dual specificity protein phosphatases: therapeutic targets for cancer and Alzheimer's disease. , 2005, Annual review of pharmacology and toxicology.

[12]  S. Keyse,et al.  Specific Inactivation and Nuclear Anchoring of Extracellular Signal-Regulated Kinase 2 by the Inducible Dual-Specificity Protein Phosphatase DUSP5 , 2005, Molecular and Cellular Biology.

[13]  Ann Allergy,et al.  O R I G I N a L a R T I C L E S , 2022 .

[14]  M. Brand,et al.  Induction and differentiation of the zebrafish heart requires fibroblast growth factor 8 (fgf8/acerebellar). , 2000, Development.

[15]  D. Yelon,et al.  Reiterative roles for FGF signaling in the establishment of size and proportion of the zebrafish heart. , 2008, Developmental biology.

[16]  M. Muda,et al.  Catalytic activation of the phosphatase MKP-3 by ERK2 mitogen-activated protein kinase. , 1998, Science.

[17]  T. Kudoh,et al.  Identification of Sef, a novel modulator of FGF signalling , 2002, Nature Cell Biology.

[18]  J. Lazo,et al.  Implementation of high-content assay for inhibitors of mitogen-activated protein kinase phosphatases. , 2007, Methods.

[19]  L. Zon,et al.  Prostaglandin E2 regulates vertebrate haematopoietic stem cell homeostasis , 2007, Nature.

[20]  M. Brand,et al.  sprouty4 acts in vivo as a feedback-induced antagonist of FGF signaling in zebrafish , 2001 .

[21]  J. Molkentin,et al.  DUSP6 (MKP3) Null Mice Show Enhanced ERK1/2 Phosphorylation at Baseline and Increased Myocyte Proliferation in the Heart Affecting Disease Susceptibility* , 2008, Journal of Biological Chemistry.

[22]  C. Clarke,et al.  A gene expression screen in zebrafish embryogenesis. , 2001, Genome research.

[23]  Michael Tsang,et al.  Promotion and Attenuation of FGF Signaling Through the Ras-MAPK Pathway , 2004, Science's STKE.

[24]  Sung-Kook Hong,et al.  Transcriptional profiling of endogenous germ layer precursor cells identifies dusp4 as an essential gene in zebrafish endoderm specification , 2008, Proceedings of the National Academy of Sciences.

[25]  R. Jernigan,et al.  Anisotropy of fluctuation dynamics of proteins with an elastic network model. , 2001, Biophysical journal.

[26]  M. Gabrielsen,et al.  Distinct Binding Determinants for ERK2/p38α and JNK MAP Kinases Mediate Catalytic Activation and Substrate Selectivity of MAP Kinase Phosphatase-1* 210 , 2001, The Journal of Biological Chemistry.

[27]  B. Thisse,et al.  Functions and regulations of fibroblast growth factor signaling during embryonic development. , 2005, Developmental biology.

[28]  B. Thisse,et al.  Erratum to “Functions and regulations of fibroblast growth factor signaling during embryonic development” [Dev. Biol. 287 (2005) 390–402] , 2006 .

[29]  Charles C Hong,et al.  Dorsomorphin inhibits BMP signals required for embryogenesis and iron metabolism. , 2008, Nature chemical biology.

[30]  S. Maegawa,et al.  A role for MKP3 in axial patterning of the zebrafish embryo , 2004, Development.

[31]  M. Gorospe,et al.  Discordance between the Binding Affinity of Mitogen-activated Protein Kinase Subfamily Members for MAP Kinase Phosphatase-2 and Their Ability to Activate the Phosphatase Catalytically* , 2001, The Journal of Biological Chemistry.

[32]  Daryl A. Scott,et al.  Dusp 6 ( Mkp 3 ) is a negative feedback regulator of FGF-stimulated ERK signaling during mouse development , 2022 .

[33]  Andreas Vogt,et al.  Chemical complementation: a definitive phenotypic strategy for identifying small molecule inhibitors of elusive cellular targets. , 2005, Pharmacology & therapeutics.

[34]  S. Keyse,et al.  Differential regulation of MAP kinase signalling by dual-specificity protein phosphatases , 2007, Oncogene.

[35]  D. Stainier,et al.  Microarray analysis of zebrafish cloche mutant using amplified cDNA and identification of potential downstream target genes , 2005, Developmental dynamics : an official publication of the American Association of Anatomists.

[36]  A. Sali,et al.  Structural genomics of protein phosphatases , 2007, Journal of Structural and Functional Genomics.

[37]  Daryl A. Scott,et al.  Dusp6 (Mkp3) is a negative feedback regulator of FGF-stimulated ERK signaling during mouse development , 2007, Development.

[38]  D. Meyer,et al.  Organization of cardiac chamber progenitors in the zebrafish blastula , 2004, Development.

[39]  L. Zon,et al.  In vivo drug discovery in the zebrafish , 2005, Nature Reviews Drug Discovery.

[40]  Simon C Watkins,et al.  Generation of FGF reporter transgenic zebrafish and their utility in chemical screens , 2007, BMC Developmental Biology.

[41]  Ivet Bahar,et al.  Toward a Molecular Understanding of the Interaction of Dual Specificity Phosphatases with Substrates: Insights from Structure-Based Modeling and High Throughput Screening , 2008, Current medicinal chemistry.

[42]  D. Yelon,et al.  Vessel and blood specification override cardiac potential in anterior mesoderm. , 2007, Developmental cell.

[43]  Peter Wipf,et al.  Novel benzofuran inhibitors of human mitogen-activated protein kinase phosphatase-1. , 2006, Bioorganic & medicinal chemistry.

[44]  V. Abraira,et al.  Changes in Sef Levels Influence Auditory Brainstem Development and Function , 2007, The Journal of Neuroscience.

[45]  D. Yelon Cardiac patterning and morphogenesis in zebrafish , 2001, Developmental dynamics : an official publication of the American Association of Anatomists.

[46]  M. Brand,et al.  Fgf8 is mutated in zebrafish acerebellar (ace) mutants and is required for maintenance of midbrain-hindbrain boundary development and somitogenesis. , 1998, Development.

[47]  D. Jeong,et al.  STRUCTURE NOTE Crystal Structure of the Catalytic Domain of Human DUSP5, a Dual Specificity MAP Kinase Protein Phosphatase , 2006 .

[48]  David S. Goodsell,et al.  Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function , 1998 .

[49]  C. Chennubhotla,et al.  Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation. , 2007, Current opinion in structural biology.

[50]  ジェイムズ・エフ・キャラハン,et al.  Inhibitors of transcription factor NF-κB , 1999 .

[51]  J. Dowling,et al.  Small molecule developmental screens reveal the logic and timing of vertebrate development. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[52]  R. Roberts,et al.  A Dynamic Epicardial Injury Response Supports Progenitor Cell Activity during Zebrafish Heart Regeneration , 2006, Cell.

[53]  D. Ambrosetti,et al.  Mechanisms underlying differential responses to FGF signaling. , 2005, Cytokine & growth factor reviews.