In vitro platforms for evaluating liver toxicity

The liver is a heterogeneous organ with many vital functions, including metabolism of pharmaceutical drugs and is highly susceptible to injury from these substances. The etiology of drug-induced liver disease is still debated although generally regarded as a continuum between an activated immune response and hepatocyte metabolic dysfunction, most often resulting from an intermediate reactive metabolite. This debate stems from the fact that current animal and in vitro models provide limited physiologically relevant information, and their shortcomings have resulted in “silent” hepatotoxic drugs being introduced into clinical trials, garnering huge financial losses for drug companies through withdrawals and late stage clinical failures. As we advance our understanding into the molecular processes leading to liver injury, it is increasingly clear that (a) the pathologic lesion is not only due to liver parenchyma but is also due to the interactions between the hepatocytes and the resident liver immune cells, stellate cells, and endothelial cells; and (b) animal models do not reflect the human cell interactions. Therefore, a predictive human, in vitro model must address the interactions between the major human liver cell types and measure key determinants of injury such as the dosage and metabolism of the drug, the stress response, cholestatic effect, and the immune and fibrotic response. In this mini-review, we first discuss the current state of macro-scale in vitro liver culture systems with examples that have been commercialized. We then introduce the paradigm of microfluidic culture systems that aim to mimic the liver with physiologically relevant dimensions, cellular structure, perfusion, and mass transport by taking advantage of micro and nanofabrication technologies. We review the most prominent liver-on-a-chip platforms in terms of their physiological relevance and drug response. We conclude with a commentary on other critical advances such as the deployment of fluorescence-based biosensors to identify relevant toxicity pathways, as well as computational models to create a predictive tool.

[1]  R. Tsien,et al.  Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein , 2004, Nature Biotechnology.

[2]  Sarah Goodchild,et al.  Engineering antibodies for biosensor technologies. , 2006, Advances in applied microbiology.

[3]  Li Di,et al.  The role of drug metabolizing enzymes in clearance , 2014, Expert opinion on drug metabolism & toxicology.

[4]  A. Guillouzo,et al.  Liver cell models in in vitro toxicology. , 1998, Environmental health perspectives.

[5]  Anne E Carpenter,et al.  Identification of small molecules for human hepatocyte expansion and iPS differentiation , 2013, Nature chemical biology.

[6]  Thomas Singer,et al.  A long-term three dimensional liver co-culture system for improved prediction of clinically relevant drug-induced hepatotoxicity. , 2013, Toxicology and applied pharmacology.

[7]  D. Taylor,et al.  A fluorescent protein biosensor of myosin II regulatory light chain phosphorylation reports a gradient of phosphorylated myosin II in migrating cells. , 1995, Molecular biology of the cell.

[8]  Luke P. Lee,et al.  Microfluidic environment for high density hepatocyte culture , 2008, Biomedical microdevices.

[9]  Luke P. Lee,et al.  An artificial liver sinusoid with a microfluidic endothelial-like barrier for primary hepatocyte culture. , 2007, Biotechnology and bioengineering.

[10]  R. Fontana,et al.  Mechanisms of drug-induced liver injury: from bedside to bench , 2011, Nature Reviews Gastroenterology &Hepatology.

[11]  P Smith,et al.  Concordance of the toxicity of pharmaceuticals in humans and in animals. , 2000, Regulatory toxicology and pharmacology : RTP.

[12]  F Peter Guengerich,et al.  Applying mechanisms of chemical toxicity to predict drug safety. , 2007, Chemical research in toxicology.

[13]  Matthew H. M. Lim,et al.  Perfused multiwell plate for 3D liver tissue engineering. , 2010, Lab on a chip.

[14]  P. J. Lusby,et al.  Getting harder: cobalt(III)-template synthesis of catenanes and rotaxanes. , 2009, Journal of the American Chemical Society.

[15]  Cynthia A Afshari,et al.  A multifactorial approach to hepatobiliary transporter assessment enables improved therapeutic compound development. , 2013, Toxicological sciences : an official journal of the Society of Toxicology.

[16]  Eric A G Blomme,et al.  Toxicogenomics in drug discovery: from preclinical studies to clinical trials. , 2004, Chemico-biological interactions.

[17]  C. Laggner,et al.  Why drugs fail--a study on side effects in new chemical entities. , 2005, Current pharmaceutical design.

[18]  Robert E Campbell,et al.  New biarsenical ligands and tetracysteine motifs for protein labeling in vitro and in vivo: synthesis and biological applications. , 2002, Journal of the American Chemical Society.

[19]  R Y Tsien,et al.  Genetically encoded reporters of protein kinase A activity reveal impact of substrate tethering , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[20]  J. Szostak,et al.  In vitro selection of RNA molecules that bind specific ligands , 1990, Nature.

[21]  J. Kelm,et al.  Multi-cell type human liver microtissues for hepatotoxicity testing , 2012, Archives of Toxicology.

[22]  E. Verpoorte,et al.  An alternative approach based on microfluidics to study drug metabolism and toxicity using liver and intestinal tissue , 2010 .

[23]  Alexander Amberg,et al.  EU framework 6 project: predictive toxicology (PredTox)--overview and outcome. , 2011, Toxicology and applied pharmacology.

[24]  P. Ganey,et al.  Intrinsic versus Idiosyncratic Drug-Induced Hepatotoxicity—Two Villains or One? , 2010, Journal of Pharmacology and Experimental Therapeutics.

[25]  P. Moghe,et al.  Mechanochemical manipulation of hepatocyte aggregation can selectively induce or repress liver-specific function. , 2000, Biotechnology and bioengineering.

[26]  R. Taub Liver regeneration: from myth to mechanism , 2004, Nature Reviews Molecular Cell Biology.

[27]  A. Kalgutkar,et al.  Minimising the potential for metabolic activation in drug discovery , 2005, Expert opinion on drug metabolism & toxicology.

[28]  Peter Greaves,et al.  First dose of potential new medicines to humans: how animals help , 2004, Nature Reviews Drug Discovery.

[29]  M. Yarmush,et al.  Evaluation of a microfluidic based cell culture platform with primary human hepatocytes for the prediction of hepatic clearance in human. , 2009, Biochemical pharmacology.

[30]  D. Keppler The Roles of MRP2, MRP3, OATP1B1, and OATP1B3 in Conjugated Hyperbilirubinemia , 2014, Drug Metabolism and Disposition.

[31]  P. Bernardi,et al.  High concordance of drug-induced human hepatotoxicity with in vitro cytotoxicity measured in a novel cell-based model using high content screening , 2006, Archives of Toxicology.

[32]  Russell A. Wilke,et al.  Identifying genetic risk factors for serious adverse drug reactions: current progress and challenges , 2008, Nature Reviews Drug Discovery.

[33]  F. Yi,et al.  Human induced pluripotent stem cells derived hepatocytes: rising promise for disease modeling, drug development and cell therapy , 2012, Protein & Cell.

[34]  Robert E Campbell,et al.  Genetically encoded biosensors based on engineered fluorescent proteins. , 2009, Chemical Society reviews.

[35]  Amy Roe,et al.  The conduct of in vitro and in vivo drug-drug interaction studies: a Pharmaceutical Research and Manufacturers of America (PhRMA) perspective. , 2003, Drug metabolism and disposition: the biological fate of chemicals.

[36]  E L LeCluyse,et al.  Human hepatocyte culture systems for the in vitro evaluation of cytochrome P450 expression and regulation. , 2001, European journal of pharmaceutical sciences : official journal of the European Federation for Pharmaceutical Sciences.

[37]  B B Brodie,et al.  Acetaminophen-induced hepatic necrosis. I. Role of drug metabolism. , 1973, The Journal of pharmacology and experimental therapeutics.

[38]  Vikram Sinha,et al.  In Vitro and in Vivo Induction of Cytochrome P450: A Survey of the Current Practices and Recommendations: A Pharmaceutical Research and Manufacturers of America Perspective , 2009, Drug Metabolism and Disposition.

[39]  R. M. Lightfoot,et al.  Use of Ca2+ modulation to evaluate biliary excretion in sandwich-cultured rat hepatocytes. , 1999, The Journal of pharmacology and experimental therapeutics.

[40]  M. Yarmush,et al.  Oxygen-mediated enhancement of primary hepatocyte metabolism, functional polarization, gene expression, and drug clearance , 2009, Proceedings of the National Academy of Sciences.

[41]  X Liu,et al.  Correlation of biliary excretion in sandwich-cultured rat hepatocytes and in vivo in rats. , 1999, Drug metabolism and disposition: the biological fate of chemicals.

[42]  Kazuki Tainaka,et al.  A single circularly permuted GFP sensor for inositol-1,3,4,5-tetrakisphosphate based on a split PH domain. , 2009, Bioorganic & medicinal chemistry.

[43]  Melvin E. Andersen,et al.  Organotypic liver culture models: Meeting current challenges in toxicity testing , 2012, Critical reviews in toxicology.

[44]  S. Bhatia,et al.  Microenvironmental regulation of the sinusoidal endothelial cell phenotype in vitro , 2009, Hepatology.

[45]  W. Maddrey Drug-induced hepatotoxicity: 2005. , 2005, Journal of clinical gastroenterology.

[46]  Alexander Tropsha,et al.  Cheminformatics analysis of assertions mined from literature that describe drug-induced liver injury in different species. , 2010, Chemical research in toxicology.

[47]  Hayley S. Brown,et al.  Primary Hepatocytes: Current Understanding of the Regulation of Metabolic Enzymes and Transporter Proteins, and Pharmaceutical Practice for the Use of Hepatocytes in Metabolism, Enzyme Induction, Transporter, Clearance, and Hepatotoxicity Studies , 2007, Drug metabolism reviews.

[48]  K. V. Van Vliet,et al.  Modulation of hepatocyte phenotype in vitro via chemomechanical tuning of polyelectrolyte multilayers. , 2009, Biomaterials.

[49]  D. Nageshwar Reddy,et al.  Thinking outside the liver: induced pluripotent stem cells for hepatic applications. , 2013, World journal of gastroenterology.

[50]  Yvonne Will,et al.  Use of micropatterned cocultures to detect compounds that cause drug-induced liver injury in humans. , 2013, Toxicological sciences : an official journal of the Society of Toxicology.

[51]  Albert Gough,et al.  Cellular Systems Biology Applied to Preclinical Safety Testing: A Case Study of CellCiphrTM Profiling , 2008 .

[52]  N. Kaplowitz Drug-Induced Liver Injury: Introduction and Overview , 2013 .

[53]  M. Morris,et al.  Fluorescent Biosensors of Intracellular Targets from Genetically Encoded Reporters to Modular Polypeptide Probes , 2009, Cell Biochemistry and Biophysics.

[54]  P. Olinga,et al.  Precision-cut liver slices: a tool to model the liver ex vivo. , 2013, Journal of hepatology.

[55]  R Y Tsien,et al.  Understanding, improving and using green fluorescent proteins. , 1995, Trends in biochemical sciences.

[56]  M. Rizzetto,et al.  Textbook of Hepatology , 2007 .

[57]  O. Fardel,et al.  Down-Regulation of Organic Anion Transporter Expression in Human Hepatocytes Exposed to the Proinflammatory Cytokine Interleukin , 2008 .

[58]  PhRMA Survey on the Conduct of First‐in‐Human Clinical Trials Under Exploratory Investigational New Drug Applications , 2010, Journal of clinical pharmacology.

[59]  Rhys D O Jones,et al.  PhRMA CPCDC initiative on predictive models of human pharmacokinetics, part 4: prediction of plasma concentration-time profiles in human from in vivo preclinical data by using the Wajima approach. , 2011, Journal of pharmaceutical sciences.

[60]  P. Olinga,et al.  Precision-cut liver slices as a new model to study toxicity-induced hepatic stellate cell activation in a physiologic milieu. , 2005, Toxicological sciences : an official journal of the Society of Toxicology.

[61]  R. Andrade,et al.  Drug-induced hepatotoxicity , 2003, The New England journal of medicine.

[62]  K. Jemnitz,et al.  Comparison of Human Hepatoma HepaRG Cells with Human and Rat Hepatocytes in Uptake Transport Assays in Order to Predict a Risk of Drug Induced Hepatotoxicity , 2013, PloS one.

[63]  Ann Richard,et al.  ACToR--Aggregated Computational Toxicology Resource. , 2008, Toxicology and applied pharmacology.

[64]  M. Yarmush,et al.  A microfluidic hepatic coculture platform for cell-based drug metabolism studies. , 2010, Biochemical pharmacology.

[65]  David S. Wishart,et al.  T3DB: a comprehensively annotated database of common toxins and their targets , 2009, Nucleic Acids Res..

[66]  S. Thorgeirsson,et al.  Acetaminophen-induced hepatic necrosis. VI. Metabolic disposition of toxic and nontoxic doses of acetaminophen. , 1974, Pharmacology.

[67]  H. Mcburney,et al.  Land-based versus pool-based exercise for people awaiting joint replacement surgery of the hip or knee: results of a randomized controlled trial. , 2009, Archives of physical medicine and rehabilitation.

[68]  Thierry Lavé,et al.  PhRMA CPCDC initiative on predictive models of human pharmacokinetics, part 1: goals, properties of the PhRMA dataset, and comparison with literature datasets. , 2011, Journal of pharmaceutical sciences.

[69]  Malcolm Rowland,et al.  PhRMA CPCDC initiative on predictive models of human pharmacokinetics, part 3: comparative assessement of prediction methods of human clearance. , 2011, Journal of pharmaceutical sciences.

[70]  James A J Fitzpatrick,et al.  Fluorogen-activating single-chain antibodies for imaging cell surface proteins , 2008, Nature Biotechnology.

[71]  Cédric Merlot,et al.  Computational toxicology--a tool for early safety evaluation. , 2010, Drug discovery today.

[72]  P. Olinga,et al.  Repair pathways evident in human liver organ slices. , 2011, Toxicology in vitro : an international journal published in association with BIBRA.

[73]  R. Tompkins,et al.  Hepatocyte function and extracellular matrix geometry: long‐term culture in a sandwich configuration , 1989, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[74]  Arun J. Sanyal,et al.  Zakim and Boyer's Hepatology: A Textbook of Liver Disease , 2016 .

[75]  L. Samson,et al.  A microscale in vitro physiological model of the liver: predictive screens for drug metabolism and enzyme induction. , 2005, Current drug metabolism.

[76]  Neil Kaplowitz,et al.  Idiosyncratic drug hepatotoxicity , 2005, Nature Reviews Drug Discovery.

[77]  N. Kaplowitz Acetaminophen hepatoxicity: What do we know, what don't we know, and what do we do next? , 2004, Hepatology.

[78]  L. Griffith,et al.  A microfabricated array bioreactor for perfused 3D liver culture. , 2002, Biotechnology and bioengineering.

[79]  Malcolm Rowland,et al.  PHRMA CPCDC initiative on predictive models of human pharmacokinetics, part 5: prediction of plasma concentration-time profiles in human by using the physiologically-based pharmacokinetic modeling approach. , 2011, Journal of pharmaceutical sciences.

[80]  R. Tsien,et al.  Imaging Dynamic Redox Changes in Mammalian Cells with Green Fluorescent Protein Indicators* , 2004, Journal of Biological Chemistry.

[81]  Albert H Gough,et al.  Early Safety Assessment Using Cellular Systems Biology Yields Insights into Mechanisms of Action , 2010, Journal of biomolecular screening.

[82]  N. Chaffey Red fluorescent protein , 2001 .

[83]  D. B. Duignan,et al.  Assessment of a Micropatterned Hepatocyte Coculture System to Generate Major Human Excretory and Circulating Drug Metabolites , 2010, Drug Metabolism and Disposition.

[84]  I. Ghosh,et al.  Split-protein systems: beyond binary protein-protein interactions. , 2011, Current opinion in chemical biology.

[85]  Hongbin Yu,et al.  Special Section on Prediction of Human Pharmacokinetic Parameters from In Vitro Systems Meeting the Challenge of Predicting Hepatic Clearance of Compounds Slowly Metabolized by Cytochrome P450 Using a Novel Hepatocyte Model, HepatoPac , 2013 .

[86]  Laura J. Itle,et al.  Microreactor Microfluidic Systems with Human Microsomes and Hepatocytes for use in Metabolite Studies , 2005, Biomedical microdevices.

[87]  J. Waring,et al.  Use of toxicogenomics to understand mechanisms of drug-induced hepatotoxicity during drug discovery and development. , 2009, Toxicology letters.

[88]  Ruili Huang,et al.  Paradigm Shift in Toxicity Testing and Modeling , 2012, The AAPS Journal.

[89]  W. M. Lee,et al.  Drug-induced hepatotoxicity. , 1995, The New England journal of medicine.

[90]  R. Paules,et al.  Phenotypic anchoring: linking cause and effect. , 2003, Environmental health perspectives.

[91]  Elisabeth Verpoorte,et al.  Microfluidic biochip for the perifusion of precision‐cut rat liver slices for metabolism and toxicology studies , 2010, Biotechnology and bioengineering.

[92]  Amy Roe,et al.  The Conduct of In Vitro and In Vivo Drug‐Drug Interaction Studies: A PhRMA Perspective , 2003, Journal of clinical pharmacology.

[93]  A. Persechini,et al.  Novel fluorescent indicator proteins for monitoring free intracellular Ca2+. , 1997, Cell calcium.

[94]  Helene Andersson,et al.  Microfabrication and microfluidics for tissue engineering: state of the art and future opportunities. , 2004, Lab on a chip.

[95]  G. Ubeaud‐Séquier,et al.  Implication of hepatic transporters (MDR1 and MRP2) in inflammation‐associated idiosyncratic drug‐induced hepatotoxicity investigated by microvolume cytometry , 2013, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

[96]  R. Tsien,et al.  Fluorescent indicators for Ca2+based on green fluorescent proteins and calmodulin , 1997, Nature.

[97]  Weida Tong,et al.  Translating Clinical Findings into Knowledge in Drug Safety Evaluation - Drug Induced Liver Injury Prediction System (DILIps) , 2011, PLoS Comput. Biol..

[98]  R. Tompkins,et al.  Long‐Term in Vitro Function of Adult Hepatocytes in a Collagen Sandwich Configuration , 1991, Biotechnology progress.

[99]  Peter V. Henstock,et al.  Cellular imaging predictions of clinical drug-induced liver injury. , 2008, Toxicological sciences : an official journal of the Society of Toxicology.

[100]  E. Björnsson,et al.  Drug‐induced liver injury: Hy's rule revisited , 2006, Clinical pharmacology and therapeutics.

[101]  Weida Tong,et al.  FDA-approved drug labeling for the study of drug-induced liver injury. , 2011, Drug discovery today.

[102]  R. Hell,et al.  Redesign of Genetically Encoded Biosensors for Monitoring Mitochondrial Redox Status in a Broad Range of Model Eukaryotes , 2014, Journal of biomolecular screening.

[103]  Malcolm Rowland,et al.  PhRMA CPCDC initiative on predictive models of human pharmacokinetics, part 2: comparative assessment of prediction methods of human volume of distribution. , 2011, Journal of pharmaceutical sciences.

[104]  Tudor I. Oprea,et al.  BDDCS Applied to Over 900 Drugs , 2011, The AAPS Journal.

[105]  A. Snapir,et al.  PhRMA Survey of Pharmacogenomic and Pharmacodynamic Evaluations: What Next? , 2012, Clinical pharmacology and therapeutics.

[106]  Frank Stahl,et al.  Comparison of primary human hepatocytes and hepatoma cell line Hepg2 with regard to their biotransformation properties. , 2003, Drug metabolism and disposition: the biological fate of chemicals.

[107]  P. Olinga,et al.  Precision-cut fibrotic rat liver slices as a new model to test the effects of anti-fibrotic drugs in vitro. , 2006, Journal of hepatology.

[108]  L. Griffith,et al.  Functional behavior of primary rat liver cells in a three-dimensional perfused microarray bioreactor. , 2002, Tissue engineering.

[109]  M L Yarmush,et al.  Hepatocytes in collagen sandwich: evidence for transcriptional and translational regulation , 1992, The Journal of cell biology.

[110]  Yuichi Sugiyama,et al.  Prediction of Hepatic Clearance in Human From In Vitro Data for Successful Drug Development , 2009, The AAPS Journal.

[111]  M. T. Donato,et al.  Fluorescence-based assays for screening nine cytochrome P450 (P450) activities in intact cells expressing individual human P450 enzymes. , 2004, Drug metabolism and disposition: the biological fate of chemicals.

[112]  F. Oesch,et al.  New Hepatocyte In Vitro Systems for Drug Metabolism: Metabolic Capacity and Recommendations for Application in Basic Research and Drug Development, Standard Operation Procedures , 2003, Drug metabolism reviews.

[113]  Mehmet Toner,et al.  Polyelectrolyte nano-scaffolds for the design of layered cellular architectures. , 2006, Tissue engineering.

[114]  P. Olinga,et al.  Organ slice viability extended for pathway characterization: an in vitro model to investigate fibrosis. , 2004, Toxicological sciences : an official journal of the Society of Toxicology.

[115]  R Y Tsien,et al.  Genetically encoded fluorescent reporters of protein tyrosine kinase activities in living cells , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[116]  J. Boyer,et al.  The Liver: Biology and Pathobiology: Fifth Edition , 2009 .