Gleason Grading of Histology Prostate Images Through Semantic Segmentation via Residual U-Net

Worldwide, prostate cancer is one of the main cancers affecting men. The final diagnosis of prostate cancer is based on the visual detection of Gleason patterns in prostate biopsy by pathologists. Computer-aided-diagnosis systems allow to delineate and classify the cancerous patterns in the tissue via computer-vision algorithms in order to support the physicians’ task. The methodological core of this work is a U-Net convolutional neural network for image segmentation modified with residual blocks able to segment cancerous tissue according to the full Gleason system. This model outperforms other well-known architectures, and reaches a pixel-level Cohen’s quadratic Kappa of 0.52, at the level of previous image-level works in the literature, but providing also a detailed localisation of the patterns.

[1]  Septimiu E. Salcudean,et al.  Comparison of Artificial Intelligence Techniques to Evaluate Performance of a Classifier for Automatic Grading of Prostate Cancer From Digitized Histopathologic Images , 2019, JAMA network open.

[2]  Arkadiusz Gertych,et al.  A Multi-scale U-Net for Semantic Segmentation of Histological Images from Radical Prostatectomies , 2017, AMIA.

[3]  Thomas Brox,et al.  U-Net: Convolutional Networks for Biomedical Image Segmentation , 2015, MICCAI.

[4]  Roberto Cipolla,et al.  SegNet: A Deep Convolutional Encoder-Decoder Architecture for Image Segmentation , 2015, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[5]  Arkadiusz Gertych,et al.  Semantic segmentation for prostate cancer grading by convolutional neural networks , 2018, Medical Imaging.

[6]  B. van Ginneken,et al.  Deep learning as a tool for increased accuracy and efficiency of histopathological diagnosis , 2016, Scientific Reports.

[7]  N. Dubrawsky Cancer statistics , 1989, CA: a cancer journal for clinicians.

[8]  T. Hermanns,et al.  Automated Gleason grading of prostate cancer tissue microarrays via deep learning , 2018, Scientific Reports.

[9]  Adrián Colomer,et al.  First-Stage Prostate Cancer Identification on Histopathological Images: Hand-Driven versus Automatic Learning , 2019, Entropy.

[10]  D. Gleason,et al.  Histologic grading of prostate cancer: a perspective. , 1992, Human pathology.

[11]  Jian Sun,et al.  Deep Residual Learning for Image Recognition , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[12]  A. Jemal,et al.  Cancer statistics, 2016 , 2016, CA: a cancer journal for clinicians.

[13]  Trevor Darrell,et al.  Fully Convolutional Networks for Semantic Segmentation , 2017, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[14]  Wenyuan Li,et al.  Path R-CNN for Prostate Cancer Diagnosis and Gleason Grading of Histological Images , 2019, IEEE Transactions on Medical Imaging.

[15]  Jacob Cohen,et al.  Weighted kappa: Nominal scale agreement provision for scaled disagreement or partial credit. , 1968 .

[16]  C. Mathers,et al.  Cancer incidence and mortality worldwide: Sources, methods and major patterns in GLOBOCAN 2012 , 2015, International journal of cancer.

[17]  Seyed-Ahmad Ahmadi,et al.  V-Net: Fully Convolutional Neural Networks for Volumetric Medical Image Segmentation , 2016, 2016 Fourth International Conference on 3D Vision (3DV).

[18]  Jian Sun,et al.  Identity Mappings in Deep Residual Networks , 2016, ECCV.