Understanding bistability in complex enzyme-driven reaction networks.

Much attention has been paid recently to bistability and switch-like behavior that might be resident in important biochemical reaction networks. There is, in fact, a great deal of subtlety in the relationship between the structure of a reaction network and its capacity to engender bistability. In common physicochemical settings, large classes of extremely complex networks, taken with mass action kinetics, cannot give rise to bistability no matter what values the rate constants take. On the other hand, bistable behavior can be induced in those same settings by certain very simple and classical mass action mechanisms for enzyme catalysis of a single overall reaction. We present a theorem that distinguishes between those mass action networks that might support bistable behavior and those that cannot. Moreover, we indicate how switch-like behavior results from a well-studied mechanism for the action of human dihydrofolate reductase, an important anti-cancer target.

[1]  H. Gutfreund,et al.  Enzyme kinetics , 1975, Nature.

[2]  J. Lisman A mechanism for memory storage insensitive to molecular turnover: a bistable autophosphorylating kinase. , 1985, Proceedings of the National Academy of Sciences of the United States of America.

[3]  M. Feinberg Chemical reaction network structure and the stability of complex isothermal reactors—I. The deficiency zero and deficiency one theorems , 1987 .

[4]  A. Murray,et al.  Dominoes and clocks: the union of two views of the cell cycle. , 1989, Science.

[5]  W. Beard,et al.  Unusual transient- and steady-state kinetic behavior is predicted by the kinetic scheme operational for recombinant human dihydrofolate reductase. , 1990, The Journal of biological chemistry.

[6]  M. Feinberg,et al.  A theory of multiple steady states in isothermal homogeneous CFSTRs with many reactions , 1994 .

[7]  B. Kholodenko,et al.  The macroworld versus the microworld of biochemical regulation and control. , 1995, Trends in biochemical sciences.

[8]  Determination of multiple steady states in an enzyme kinetics involving two substrates in a CSTR , 2000 .

[9]  Katherine C. Chen,et al.  Kinetic analysis of a molecular model of the budding yeast cell cycle. , 2000, Molecular biology of the cell.

[10]  Martin Feinberg,et al.  How catalytic mechanisms reveal themselves in multiple steady-state data: I. Basic principles , 2000 .

[11]  D Gonze,et al.  A model for a network of phosphorylation-dephosphorylation cycles displaying the dynamics of dominoes and clocks. , 2001, Journal of theoretical biology.

[12]  K D Watenpaugh,et al.  The Cyclin-dependent Kinases cdk2 and cdk5 Act by a Random, Anticooperative Kinetic Mechanism* , 2001, The Journal of Biological Chemistry.

[13]  F. Cross,et al.  Testing a mathematical model of the yeast cell cycle. , 2002, Molecular biology of the cell.

[14]  John J. Tyson,et al.  Hysteresis drives cell-cycle transitions in Xenopus laevis egg extracts , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[15]  J. Ferrell,et al.  A positive-feedback-based bistable ‘memory module’ that governs a cell fate decision , 2003, Nature.

[16]  Peter J. Verveer,et al.  EGFR activation coupled to inhibition of tyrosine phosphatases causes lateral signal propagation , 2003, Nature Cell Biology.

[17]  N. Turner PLOS Biology , 2004, BMJ : British Medical Journal.

[18]  B. Kholodenko,et al.  Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades , 2004, The Journal of cell biology.

[19]  Martin Feinberg,et al.  Multiple Equilibria in Complex Chemical Reaction Networks: I. the Injectivity Property * , 2006 .

[20]  Martin Feinberg,et al.  Multiple Equilibria in Complex Chemical Reaction Networks: Ii. the Species-reactions Graph , 2022 .