Structure of tobacco mosaic virus at 3.6 A resolution: implications for assembly.

X-ray fiber diffraction analysis of tobacco mosaic virus (TMV) has led to the building of a molecular model of the intact virus, based on a map at 3.6 A resolution derived from five separated Bessel orders. This has been made possible by advances in the solution of the fiber diffraction phase problem. It is now possible to understand much of the chemical basis of TMV assembly, particularly in terms of intersubunit electrostatic interactions and RNA binding. Consideration of the molecular structure in conjunction with physical chemical studies by several groups of investigators suggests that the nucleating aggregate for initiation of TMV assembly is a short (about two turns) helix of protein subunits, probably inhibited from further polymerization in the absence of RNA by the disordering of peptide loop near the inner surface of the virus.

[1]  A. Klug,et al.  The splitting of layer lines in X‐ray fibre diagrams of helical structures: application to tobacco mosaic virus , 1955 .

[2]  R. Staden,et al.  Protein disk of tobacco mosaic virus at 2.8 Å resolution showing the interactions within and between subunits , 1978, Nature.

[3]  G. Stubbs,et al.  Structure of the RNA in tobacco mosaic virus. , 1981, Journal of molecular biology.

[4]  R. J. Rowlands,et al.  Digital processing of fibre diffraction patterns , 1976 .

[5]  K. Namba,et al.  Application of restrained least-squares refinement to fiber diffraction from macromolecular assemblies. , 1986, Biophysical journal.

[6]  J. Waser Fourier transforms and scattering intensities of tubular objects , 1955 .

[7]  R. Diamond,et al.  The phase problem for cylindrically averaged diffraction patterns. Solution by isomorphous replacement and application to tobacco mosaic virus , 1975 .

[8]  D. Moras,et al.  Correlation between segmental mobility and the location of antigenic determinants in proteins , 1984, Nature.

[9]  K Namba,et al.  Computer graphics representation of levels of organization in tobacco mosaic virus structure. , 1985, Science.

[10]  T. M. Schuster,et al.  Sequence specificity of trinucleoside diphosphate binding to polymerized tobacco mosaic virus protein , 1982, Nature.

[11]  O. Jardetzky,et al.  Unusual segmental flexibility in a region of tobacco mosaic virus coat protein , 1978, Nature.

[12]  K. Richards,et al.  Inside-out model for self-assembly of tobacco mosaic virus. , 1977, Proceedings of the National Academy of Sciences of the United States of America.

[13]  R. Jaenicke,et al.  Circular-dichroism and absorption spectroscopic studies on specific aromatic residues involved in the different modes of aggregation of tobacco-mosaic-virus protein. , 1976, European journal of biochemistry.

[14]  M. A. Lauffer,et al.  Calcium ion binding by tobacco mosaic virus. , 1983, Journal of molecular biology.

[15]  D. Zimmern The nucleotide sequence at the origin for assembly on tobacco mosaic virus RNA , 1977, Cell.

[16]  K. Namba,et al.  Solving the phase problem in fiber diffraction. Application to tobacco mosaic virus at 3.6 Å resolution , 1985 .

[17]  Y. Okada,et al.  Structure of N-bromosuccinimide-modified tobacco mosaic virus protein and its function in the reconstitution process. , 1972, Virology.

[18]  K. Holmes,et al.  Structure of RNA and RNA binding site in tobacco mosaic virus from 4-Å map calculated from X-ray fibre diagrams , 1977, Nature.

[19]  M. A. Lauffer,et al.  Hydrogen ion uptake upon tobacco mosaic virus protein polymerization. , 1977, Journal of molecular biology.

[20]  L. Makowski,et al.  Coordinated use of isomorphous replacement and layer-line splitting in the phasing of fiber diffraction data , 1982 .

[21]  T. M. Schuster,et al.  Tobacco mosaic virus protein aggregates in solution: structural comparison of 20S aggregates with those near conditions for disk crystallization. , 1985, Biochemistry.

[22]  L. Makowski Processing of X‐ray diffraction data from partially oriented specimens , 1978 .

[23]  H. Fraenkel-conrat,et al.  RECONSTITUTION OF ACTIVE TOBACCO MOSAIC VIRUS FROM ITS INACTIVE PROTEIN AND NUCLEIC ACID COMPONENTS. , 1955, Proceedings of the National Academy of Sciences of the United States of America.

[24]  J. D. Bernal,et al.  X-RAY AND CRYSTALLOGRAPHIC STUDIES OF PLANT VIRUS PREPARATIONS : I. INTRODUCTION AND PREPARATION OF SPECIMENS II. MODES OF AGGREGATION OF THE VIRUS PARTICLES. , 1941 .

[25]  D. Caspar,et al.  ASSEMBLY AND STABILITY OF THE TOBACCO MOSAIC VIRUS PARTICLE. , 1963, Advances in protein chemistry.

[26]  J. Finch,et al.  Configuration of tobacco mosaic virus RNA during virus assembly , 1977, Nature.

[27]  Calcium ion binding by isolated tobacco mosaic virus coat protein. , 1983, Journal of molecular biology.

[28]  G. Bricogne,et al.  The structure of the protein disk of tobacco mosaic virus to 5 Å resolution , 1976, Nature.

[29]  J. Correia,et al.  Sedimentation equilibrium measurements of the intermediate-size tobacco mosaic virus protein polymers. , 1985, Biochemistry.

[30]  A. Klug,et al.  X-ray analysis of the disk of tobacco mosaic virus protein. I. Crystallization of the protein and of a heavy-atom derivative. , 1974, Journal of molecular biology.

[31]  Francis Crick,et al.  Diffraction by helical structures , 1958 .

[32]  A. Klug,et al.  The nature of the helical groove on the tobacco mosiac virus particle; x-ray diffraction studies. , 1956, Biochimica et biophysica acta.