Quantitative real-time PCR for cancer detection: the lymphoma case
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Anders Ståhlberg | Mikael Kubista | M. Kubista | A. Ståhlberg | P. Åman | Pierre Aman | Neven Zoric | Neven Zoric
[1] T. Masuda,et al. Development of consensus fluorogenically labeled probes of the immunoglobulin heavy‐chain gene for detecting minimal residual disease in B‐cell non‐Hodgkin lymphomas , 2003, Cancer science.
[2] Francisco Vega,et al. Chromosomal translocations involved in non-Hodgkin lymphomas. , 2003, Archives of pathology & laboratory medicine.
[3] Alfred Pingoud,et al. Real‐Time Polymerase Chain Reaction , 2003, Chembiochem : a European journal of chemical biology.
[4] R. Abramson,et al. Detection of specific polymerase chain reaction product by utilizing the 5'----3' exonuclease activity of Thermus aquaticus DNA polymerase. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[5] S. Akilesh,et al. Customized molecular phenotyping by quantitative gene expression and pattern recognition analysis. , 2003, Genome research.
[6] Adrian Wiestner,et al. A gene expression-based method to diagnose clinically distinct subgroups of diffuse large B cell lymphoma , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[7] Kazuhiro Nagai,et al. Identifying progression‐associated genes in adult T‐cell leukemia/lymphoma by using oligonucleotide microarrays , 2004, International journal of cancer.
[8] M. Pfaffl,et al. A new mathematical model for relative quantification in real-time RT-PCR. , 2001, Nucleic acids research.
[9] M. Day,et al. Real-time RT-PCR: considerations for efficient and sensitive assay design. , 2004, Journal of immunological methods.
[10] J. Gribben,et al. Immunoglobulin heavy-chain consensus probes for real-time PCR quantification of residual disease in acute lymphoblastic leukemia. , 2000, Blood.
[11] B. Liss,et al. Correlating function and gene expression of individual basal ganglia neurons , 2004, Trends in Neurosciences.
[12] Dieter Klein,et al. Quantification using real-time PCR technology : applications and limitations , 2002 .
[13] B. Liss. Improved quantitative real-time RT-PCR for expression profiling of individual cells. , 2002, Nucleic acids research.
[14] Fred Russell Kramer,et al. Multicolor molecular beacons for allele discrimination , 1998, Nature Biotechnology.
[15] N. Brousse,et al. High Level of Glutathione-S-Transferase π Expression in Mantle Cell Lymphomas , 2004, Clinical Cancer Research.
[16] Nucleic acid-based technologies: application amplified. , 2004, Pharmacogenomics.
[17] Frank Vitzthum,et al. Investigations on DNA intercalation and surface binding by SYBR Green I, its structure determination and methodological implications. , 2004, Nucleic acids research.
[18] Meland,et al. The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma. , 2002, The New England journal of medicine.
[19] R. Foà,et al. Monitoring of minimal residual disease after CHOP and rituximab in previously untreated patients with follicular lymphoma. , 2002, Blood.
[20] Carl T Wittwer,et al. Real-time PCR technology for cancer diagnostics. , 2002, Clinical chemistry.
[21] Hans Lehrach,et al. A comparison of oligonucleotide and cDNA-based microarray systems. , 2004, Physiological genomics.
[22] P. Paschka,et al. Early reduction of BCR-ABL mRNA transcript levels predicts cytogenetic response in chronic phase CML patients treated with imatinib after failure of interferon α , 2002, Leukemia.
[23] F. Watzinger,et al. Evaluation of candidate control genes for diagnosis and residual disease detection in leukemic patients using ‘real-time’ quantitative reverse-transcriptase polymerase chain reaction (RQ-PCR) – a Europe against cancer program , 2003, Leukemia.
[24] B. Coiffier,et al. Diffuse large cell lymphoma. , 2001, Current opinion in oncology.
[25] Nigel J Walker,et al. Tech.Sight. A technique whose time has come. , 2002, Science.
[26] M. Pfaffl,et al. Standardized determination of real-time PCR efficiency from a single reaction set-up. , 2003, Nucleic acids research.
[27] T. Godfrey,et al. Quantitative mRNA expression analysis from formalin-fixed, paraffin-embedded tissues using 5' nuclease quantitative reverse transcription-polymerase chain reaction. , 2000, The Journal of molecular diagnostics : JMD.
[28] Ash A. Alizadeh,et al. Prediction of survival in diffuse large-B-cell lymphoma based on the expression of six genes. , 2004, The New England journal of medicine.
[29] M. Kubista,et al. Properties of the reverse transcription reaction in mRNA quantification. , 2004, Clinical chemistry.
[30] B. Liss,et al. Tuning pacemaker frequency of individual dopaminergic neurons by Kv4.3L and KChip3.1 transcription , 2001, The EMBO journal.
[31] Petter Mostad,et al. Quantitative Real-Time PCR Method for Detection of B-Lymphocyte Monoclonality by Comparison of κ and λ Immunoglobulin Light Chain Expression , 2003 .
[32] P. Ikonomi,et al. Multiplex quantitative PCR using self-quenched primers labeled with a single fluorophore. , 2002, Nucleic acids research.
[33] H. Höfler,et al. Quantitative gene expression analysis in microdissected archival formalin-fixed and paraffin-embedded tumor tissue. , 2001, The American journal of pathology.
[34] W. Al-Soud,et al. Identification and Characterization of Immunoglobulin G in Blood as a Major Inhibitor of Diagnostic PCR , 2000, Journal of Clinical Microbiology.
[35] R. Todd,et al. Challenges of single-cell diagnostics: analysis of gene expression. , 2002, Trends in molecular medicine.
[36] Nigel J. Walker,et al. A Technique Whose Time Has Come , 2002, Science.
[37] M. Björkholm,et al. Real-time polymerase chain reaction determination of cytokine mRNA expression profiles in Hodgkin's lymphoma. , 2004, Haematologica.
[38] D. Arber. Molecular diagnostic approach to non-Hodgkin's lymphoma. , 2000, The Journal of molecular diagnostics : JMD.
[39] M. Mhlanga,et al. Using molecular beacons to detect single-nucleotide polymorphisms with real-time PCR. , 2001, Methods.
[40] G. Landes,et al. Analysis of human transcriptomes , 1999, Nature Genetics.
[41] E. Schneider,et al. Validation of sixteen leukemia and lymphoma cell lines as controls for molecular gene rearrangement assays. , 2002, Clinical chemistry.
[42] Anders Ståhlberg,et al. Comparison of reverse transcriptases in gene expression analysis. , 2004, Clinical chemistry.
[43] I. Lossos,et al. Optimization of quantitative real-time RT-PCR parameters for the study of lymphoid malignancies , 2003, Leukemia.
[44] B. Smith,et al. Real-time quantitative reverse transcription-PCR for cyclin D1 mRNA in blood, marrow, and tissue specimens for diagnosis of mantle cell lymphoma. , 2004, Clinical chemistry.
[45] A. Moorman,et al. Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data , 2003, Neuroscience Letters.
[46] F. Speleman,et al. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes , 2002, Genome Biology.
[47] S A Bustin,et al. Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems. , 2002, Journal of molecular endocrinology.
[48] Sanjay Tyagi,et al. Molecular Beacons: Probes that Fluoresce upon Hybridization , 1996, Nature Biotechnology.
[49] John Quackenbush,et al. Universal RNA reference materials for gene expression. , 2004, Clinical chemistry.
[50] E. Kjeldsen,et al. Kinetics of BCR‐ABL fusion transcript levels in chronic myeloid leukemia patients treated with STI571 measured by quantitative real‐time polymerase chain reaction , 2001, European journal of haematology.
[51] C. Wittwer,et al. Continuous fluorescence monitoring of rapid cycle DNA amplification. , 1997, BioTechniques.
[52] Todd,et al. Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning , 2002, Nature Medicine.
[53] M. Busslinger,et al. Independent regulation of the two Pax5 alleles during B-cell development , 1999, Nature Genetics.
[54] A new minor groove binding asymmetric cyanine reporter dye for real-time PCR. , 2003, Nucleic acids research.
[55] B. Olgemöller,et al. Simple technique for internal control of real-time amplification assays. , 2004, Clinical chemistry.
[56] B. Seed,et al. A PCR primer bank for quantitative gene expression analysis. , 2003, Nucleic acids research.
[57] J. Peccoud,et al. Theoretical uncertainty of measurements using quantitative polymerase chain reaction. , 1996, Biophysical journal.
[58] J. Lakowicz. Principles of fluorescence spectroscopy , 1983 .
[59] D. Ginzinger. Gene quantification using real-time quantitative PCR: an emerging technology hits the mainstream. , 2002, Experimental hematology.
[60] F. Cabanillas,et al. Quantitative assessment of disease involvement by follicular lymphoma using real-time polymerase chain reaction measurement of t(14;18)-carrying cells , 2004, International journal of hematology.
[61] D. Corey,et al. Locked nucleic acid (LNA): fine-tuning the recognition of DNA and RNA. , 2001, Chemistry & biology.
[62] F. Kramer,et al. Thermodynamic basis of the enhanced specificity of structured DNA probes. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[63] S. Bustin. Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays. , 2000, Journal of molecular endocrinology.
[64] J. Gabert,et al. Detection of minimal residual disease in hematologic malignancies by real-time quantitative PCR: principles, approaches, and laboratory aspects , 2003, Leukemia.
[65] Kirk M. Ririe,et al. Product differentiation by analysis of DNA melting curves during the polymerase chain reaction. , 1997, Analytical biochemistry.
[66] E. Lukhtanov,et al. 3'-minor groove binder-DNA probes increase sequence specificity at PCR extension temperatures. , 2000, Nucleic acids research.
[67] G. Horgan,et al. Relative expression software tool (REST©) for group-wise comparison and statistical analysis of relative expression results in real-time PCR , 2002 .
[68] R. Warnke,et al. CyclinD1/CyclinD3 ratio by real-time PCR improves specificity for the diagnosis of mantle cell lymphoma. , 2004, The Journal of molecular diagnostics : JMD.
[69] Tzachi Bar,et al. Kinetic Outlier Detection (KOD) in real-time PCR. , 2003, Nucleic acids research.
[70] D. Melton,et al. Single-cell transcript analysis of pancreas development. , 2003, Developmental cell.
[71] Ash A. Alizadeh,et al. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling , 2000, Nature.
[72] Donna Neuberg,et al. Center B Cells Using Cdna Arrays Gene Expression Profiling of Follicular Lymphoma and Normal Germinal , 2022 .
[73] L. Dyrskjøt. Classification of bladder cancer by microarray expression profiling: towards a general clinical use of microarrays in cancer diagnostics , 2003, Expert review of molecular diagnostics.
[74] Charles M Perou,et al. Statistical modeling for selecting housekeeper genes , 2004, Genome Biology.
[75] M. Kubista,et al. Detection of PCR products in real time using light-up probes. , 2000, Analytical biochemistry.
[76] Takeshi Suzuki,et al. High-Throughput Retroviral Tagging for Identification of Genes Involved in Initiation and Progression of Mouse Splenic Marginal Zone Lymphomas , 2004, Cancer Research.
[77] I. Nazarenko,et al. Detection of telomerase activity utilizing energy transfer primers: comparison with gel- and ELISA-based detection. , 1999, BioTechniques.
[78] R. Rutledge,et al. Mathematics of quantitative kinetic PCR and the application of standard curves. , 2003, Nucleic acids research.
[79] D. Whitcombe,et al. Detection of PCR products using self-probing amplicons and fluorescence , 1999, Nature Biotechnology.
[80] T. Masuda,et al. Quantitative assessment of contaminating tumor cells in autologous peripheral blood stem cells of B-cell non-Hodgkin lymphomas using immunoglobulin heavy chain gene allele-specific oligonucleotide real-time quantitative-polymerase chain reaction. , 2003, Leukemia research.
[81] B. Smith,et al. Real-time quantitative reverse transcription-PCR for cyclin D1 mRNA in blood, marrow, and tissue specimens for diagnosis of mantle cell lymphoma. , 2004, Clinical chemistry.
[82] Weihong Liu,et al. Validation of a quantitative method for real time PCR kinetics. , 2002, Biochemical and biophysical research communications.
[83] K. Elenitoba-Johnson,et al. Microarray analysis of B-cell lymphoma cell lines with the t(14;18). , 2002, The Journal of molecular diagnostics : JMD.