Reef Rescue Monitoring Program: final report of JCU activities 2011/12: flood plumes and extreme weather monitoring for the Great Barrier Reef Marine Park Authority

The Reef Rescue Marine Monitoring Program (herein referred to as the MMP) undertaken in the Great Barrier Reef (GBR) lagoon assesses the long-term effectiveness of the Australian and Queensland Government's Reef Water Quality Protection Plan and the Australian Government Reef Rescue initiative. The MMP was established in 2005 to help assess the long-term status and health of GBR ecosystems and is a critical component in the assessment of regional water quality as land management practices are improved across GBR catchments. The program forms an integral part of the Reef Plan Paddock to Reef Integrated Monitoring, Modelling and Reporting Program supported through Reef Plan and Reef Rescue initiatives. This report details the sampling that has taken place under the Reef Rescue Marine Monitoring Program: Terrestrial discharge into the Great Barrier Reef (project 3.7.2b) for the 2011/12 sampling year, led by James Cook University (JCU).

[1]  Vincent Marieu,et al.  Monitoring spatio-temporal variability of the Adour River turbid plume (Bay of Biscay, France) with MODIS 250-m imagery , 2014 .

[2]  Amelia Wenger,et al.  Combining in-situ water quality and remotely sensed data across spatial and temporal scales to measure variability in wet season chlorophyll-a: Great Barrier Reef lagoon (Queensland, Australia) , 2013, Ecological Processes.

[3]  Robert L Pressey,et al.  A novel approach to model exposure of coastal-marine ecosystems to riverine flood plumes based on remote sensing techniques. , 2013, Journal of environmental management.

[4]  A. Valle‐Levinson,et al.  Bathymetric effects on estuarine plume dynamics , 2013 .

[5]  P. Fearns,et al.  Digitise This! A Quick and Easy Remote Sensing Method to Monitor the Daily Extent of Dredge Plumes , 2012, PloS one.

[6]  Jochen F. Mueller,et al.  Pesticide monitoring in inshore waters of the Great Barrier Reef using both time-integrated and event monitoring techniques (2011 - 2012) , 2012 .

[7]  R. Berkelmans,et al.  Salinity thresholds of Acropora spp. on the Great Barrier Reef , 2012, Coral Reefs.

[8]  Jon Brodie,et al.  A critical review of environmental management of the 'not so Great' Barrier Reef , 2012 .

[9]  L. McKinna,et al.  Monitoring and mapping of flood plumes in the Great Barrier Reef based on in-situ and remote sensing observations , 2012 .

[10]  D. Alongi,et al.  Regional-scale nitrogen and phosphorus budgets for the northern (14°S) and central (17°S) Great Barrier Reef shelf ecosystem , 2011 .

[11]  David Haynes,et al.  Assessment of the eutrophication status of the Great Barrier Reef lagoon (Australia) , 2011 .

[12]  S. J. Painting,et al.  Comparison of five methods for assessing impacts of nutrient enrichment using estuarine case studies , 2011 .

[13]  M. Devlin Flooding in NE Australia: how ongoing monitoring of floodplumes helps in managing the Great Barrier Reef , 2011 .

[14]  B. Schaffelke,et al.  Reef Rescue Marine Monitoring Program. Final Report of AIMS Activities Inshore water quality monitoring 2009/10 , 2010 .

[15]  A. Thompson,et al.  Reef Rescue Marine Monitoring Program. Final Report of AIMS Activities - Inshore coral reef monitoring 2009/10. , 2010 .

[16]  J. Brodie,et al.  Dispersal of suspended sediments and nutrients in the Great Barrier Reef lagoon during river-discharge events: conclusions from satellite remote sensing and concurrent flood-plume sampling , 2010 .

[17]  Glenn De'ath,et al.  Water quality as a regional driver of coral biodiversity and macroalgae on the Great Barrier Reef. , 2010, Ecological applications : a publication of the Ecological Society of America.

[18]  Britta Schaffelke,et al.  Spatial extent of riverine flood plumes and exposure of marine ecosystems in the Tully coastal region, Great Barrier Reef , 2009 .

[19]  J. Brodie,et al.  Reef exposure to river-borne contaminants: a spatial model , 2009 .

[20]  C. McClain A decade of satellite ocean color observations. , 2009, Annual review of marine science.

[21]  Jon Barry,et al.  Estimating the diffuse attenuation coefficient from optically active constituents in UK marine waters , 2009 .

[22]  P. Ridd,et al.  Temporal dynamics in coral bioindicators for water quality on coastal coral reefs of the Great Barrier Reef , 2008 .

[23]  K. Fabricius,et al.  Effects of suspended sediments, dissolved inorganic nutrients and salinity on fertilisation and embryo development in the coral Acropora millepora (Ehrenberg, 1834) , 2008, Coral reefs.

[24]  K. Fabricius,et al.  Wet season fine sediment dynamics on the inner shelf of the Great Barrier Reef , 2008 .

[25]  Menghua Wang,et al.  The NIR-SWIR combined atmospheric correction approach for MODIS ocean color data processing. , 2007, Optics express.

[26]  A. Dekker,et al.  Validity of SeaDAS water constituents retrieval algorithms in Australian tropical coastal waters , 2007 .

[27]  K. Fabricius,et al.  Gradients in water column nutrients, sediment parameters, irradiance and coral reef development in the Whitsunday Region, central Great Barrier Reef , 2007 .

[28]  Jon Brodie,et al.  Spatial and temporal patterns of near-surface chlorophyll a in the Great Barrier Reef lagoon , 2007 .

[29]  A. Thomas,et al.  Satellite-measured temporal variability of the Columbia River plume , 2006 .

[30]  Xiao‐Hai Yan,et al.  Tracking of a Chesapeake Bay estuarine outflow plume with satellite-based ocean color data , 2005 .

[31]  Jiangtao Xu,et al.  A simple empirical optical model for simulating light attenuation variability in a partially mixed estuary , 2005 .

[32]  K. Fabricius Effects of terrestrial runoff on the ecology of corals and coral reefs: review and synthesis. , 2005, Marine pollution bulletin.

[33]  A. Orpin,et al.  Patterns of mixed siliciclastic‐carbonate sedimentation adjacent to a large dry‐tropics river on the central Great Barrier Reef shelf, Australia , 2004 .

[34]  Janet W. Campbell,et al.  On the seasonal correlation of surface particle fields with wind stress and Mississippi discharge in , 2004 .

[35]  W. Geyer,et al.  The transport, transformation and dispersal of sediment by buoyant coastal flows , 2004 .

[36]  Eric Wolanski,et al.  Effects of transparent exopolymer particles and muddy terrigenous sediments on the survival of hard coral recruits , 2003 .

[37]  A. Kerswell,et al.  Effects of hypo-osmosis on the coral Stylophora pistillata: nature and cause of low-salinity bleaching¹ , 2003 .

[38]  Miles Furnas,et al.  Catchments and Corals: Terrestrial Runoff to the Great Barrier Reef , 2003 .

[39]  R. Arnone,et al.  Deriving inherent optical properties from water color: a multiband quasi-analytical algorithm for optically deep waters. , 2002, Applied optics.

[40]  J. Brodie,et al.  Flood plumes in the Great Barrier Reef : spatial and temporal patterns in composition and distribution , 2001 .

[41]  Charles R. McClain,et al.  Data analysis system developed for ocean color satellite sensors , 2001 .

[42]  K. Fabricius,et al.  Shifting roles of heterotrophy and autotrophy in coral energetics under varying turbidity. , 2000, Journal of experimental marine biology and ecology.

[43]  D. Siegel,et al.  Inherent optical property inversion of ocean color spectra and its biogeochemical interpretation: 1. Time series from the Sargasso Sea , 1997 .

[44]  P. Ridd,et al.  Factors controlling suspended sediment on inner-shelf coral reefs, Townsville, Australia , 1995, Coral Reefs.

[45]  B. Osborne,et al.  Light and Photosynthesis in Aquatic Ecosystems. , 1985 .

[46]  L. Prieur,et al.  Analysis of variations in ocean color1 , 1977 .

[47]  R. Holmes,et al.  THE SECCHI DISK IN TURBID COASTAL WATERS1 , 1970 .

[48]  C. Lorenzen,et al.  Spectra of Backscattered Light from the Sea Obtained from Aircraft as a Measure of Chlorophyll Concentration , 1970, Science.

[49]  L. McKinna,et al.  Mapping the pollutants in surface riverine flood plume waters in the Great Barrier Reef, Australia. , 2012, Marine pollution bulletin.

[50]  B. Schaffelke,et al.  Catchment-to-reef continuum: Case studies from the Great Barrier Reef. A special issue--Marine Pollution Bulletin 2012. , 2012, Marine pollution bulletin.

[51]  G. De’ath,et al.  A bioindicator system for water quality on inshore coral reefs of the Great Barrier Reef. , 2012, Marine pollution bulletin.

[52]  Eduardo Teixeira da Silva,et al.  Extreme weather conditions in the Great Barrier Reef: drivers of change? , 2012 .

[53]  Britta Schaffelke,et al.  Water quality in the inshore Great Barrier Reef lagoon: Implications for long-term monitoring and management. , 2012, Marine pollution bulletin.

[54]  J. Brodie,et al.  Quantifying the sources of pollutants in the Great Barrier Reef catchments and the relative risk to reef ecosystems. , 2012, Marine pollution bulletin.

[55]  Vittorio E Brando,et al.  Inter-annual variability of wet season freshwater plume extent into the Great Barrier Reef lagoon based on satellite coastal ocean colour observations. , 2012, Marine pollution bulletin.

[56]  I. Bohnet,et al.  Terrestrial pollutant runoff to the Great Barrier Reef: An update of issues, priorities and management responses. , 2012, Marine pollution bulletin.

[57]  R. Turner,et al.  Estimates of sediment and nutrient loads in 10 major catchments draining to the Great Barrier Reef during 2006-2009. , 2012, Marine pollution bulletin.

[58]  K. Fabricius,et al.  Pigmentation of massive corals as a simple bioindicator for marine water quality. , 2012, Marine pollution bulletin.

[59]  Eric Wolanski,et al.  Fine sediment and nutrient dynamics related to particle size and floc formation in a Burdekin River flood plume, Australia. , 2012, Marine pollution bulletin.

[60]  Catherine J. Collier,et al.  Reef Rescue Marine Monitoring Program: Inshore seagrass, annual report for the sampling period 1st July 2010 – 31st May 2011 , 2012 .

[61]  T. Schroeder,et al.  Reef Rescue Marine Monitoring Program: Assessment of terrestrial run-off entering the Reef and inshore marine water quality monitoring using earth observation data. Final report for 2010/11 activities , 2011 .

[62]  Murray Logan,et al.  Reef Rescue Marine Monitoring Program. Report of AIMS Activities Inshore coral reef monitoring 2011. Report for Great Barrier Reef Marine Park Authority , 2011 .

[63]  Xin Wang,et al.  American Association of Petroleum Geologists Memoir , 2011 .

[64]  D. Hopley Encyclopedia of Modern Coral Reefs , 2011 .

[65]  André Valente,et al.  On the observability of the fortnightly cycle of the Tagus estuary turbid plume using MODIS ocean colour images , 2009 .

[66]  Johnston Davidson,et al.  Reef Rescue Marine Monitoring Program , 2009 .

[67]  G. De’ath,et al.  Water quality of the Great Barrier Reef: distributions, effects on reef biota and trigger values for the protection of ecosystem health , 2008 .

[68]  O. Hoegh‐Guldberg,et al.  Scientific Consensus Statement on Water Quality in the Great Barrier Reef , 2008 .

[69]  R. Cromley,et al.  AN EVALUATION OF CLASSIFICATION SCHEMES BASED ON THE STATISTICAL VERSUS THE SPATIAL STRUCTURE PROPERTIES OF GEOGRAPHIC DISTRIBUTIONS IN CHOROPLETH MAPPING , 2008 .

[70]  D. Klumpp,et al.  The use of biomarkers in barramundi (Lates calcarifer) to monitor contaminants in estuaries of tropical North Queensland , 2007 .

[71]  J. Brodie,et al.  Terrestrial discharge into the Great Barrier Reef Lagoon: nutrient behavior in coastal waters. , 2005, Marine pollution bulletin.

[72]  G. De’ath,et al.  Changes in algal, coral and fish assemblages along water quality gradients on the inshore Great Barrier Reef. , 2005, Marine pollution bulletin.

[73]  Jon Brodie,et al.  Water quality guidelines for the Great Barrier Reef World Heritage Area: a basis for development and preliminary values. , 2005, Marine pollution bulletin.

[74]  D. Alongi,et al.  The cycling and fate of terrestrially-derived sediments and nutrients in the coastal zone of the Great Barrier Reef shelf. , 2005, Marine pollution bulletin.

[75]  J. Brodie,et al.  In the other 90%: phytoplankton responses to enhanced nutrient availability in the Great Barrier Reef Lagoon. , 2005, Marine pollution bulletin.

[76]  Jon Brodie,et al.  Are increased nutrient inputs responsible for more outbreaks of crown-of-thorns starfish? An appraisal of the evidence. , 2005, Marine pollution bulletin.

[77]  J. Brodie,et al.  Exposure of Great Barrier Reef inner-shelf reefs to river-borne contaminants , 2003 .

[78]  R. Berkelmans Time-integrated thermal bleaching thresholds of reefs and their variation on the Great Barrier Reef , 2002 .

[79]  K. Fabricius,et al.  Rapid Smothering of Coral Reef Organisms by Muddy Marine Snow , 2000 .

[80]  J. Brodie Enhancement of Larval and Juvenile Survival and Recruitment in Acanthaster planci from the Effects of Terrestrial Runoff: a Review , 1992 .

[81]  M. Furnas Cyclonic disturbance and a phytoplankton bloom in a tropical shelf ecosystem , 1989 .

[82]  Timothy R. Parsons,et al.  A manual of chemical and biological methods for seawater analysis , 1984 .