Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

[1]  S. Krasnoff,et al.  Intracellular siderophore but not extracellular siderophore is required for full virulence in Metarhizium robertsii. , 2015, Fungal genetics and biology : FG & B.

[2]  Srikrishna Subramanian,et al.  Genome Sequence, Comparative Analysis, and Evolutionary Insights into Chitinases of Entomopathogenic Fungus Hirsutella thompsonii , 2015, Genome biology and evolution.

[3]  Chengshu Wang,et al.  Trajectory and genomic determinants of fungal-pathogen speciation and host adaptation , 2014, Proceedings of the National Academy of Sciences.

[4]  H. Haas.  Fungal siderophore metabolism with a focus on Aspergillus fumigatus , 2014, Natural product reports.

[5]  K. Chung,et al.  Resistance to oxidative stress via regulating siderophore-mediated iron acquisition by the citrus fungal pathogen Alternaria alternata. , 2014, Microbiology.

[6]  Hsiao-ling Lu,et al.  Host-to-Pathogen Gene Transfer Facilitated Infection of Insects by a Pathogenic Fungus , 2014, PLoS pathogens.

[7]  Alexandros Stamatakis,et al.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies , 2014, Bioinform..

[8]  A. Brakhage,et al.  Human and Plant Fungal Pathogens: The Role of Secondary Metabolites , 2014, PLoS pathogens.

[9]  James K. Hane,et al.  The genome sequence of the biocontrol fungus Metarhizium anisopliae and comparative genomics of Metarhizium species , 2014, BMC Genomics.

[10]  Xingzhong Liu,et al.  Drechslerella stenobrocha genome illustrates the mechanism of constricting rings and the origin of nematode predation in fungi , 2014, BMC Genomics.

[11]  J. Kronstad,et al.  Role of Ferric Reductases in Iron Acquisition and Virulence in the Fungal Pathogen Cryptococcus neoformans , 2013, Infection and Immunity.

[12]  M. Faramarzi,et al.  From bacteria to human: a journey into the world of chitinases. , 2013, Biotechnology advances.

[13]  B. Thomma,et al.  LysM Effectors: Secreted Proteins Supporting Fungal Life , 2013, PLoS pathogens.

[14]  Koichiro Tamura,et al.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. , 2013, Molecular biology and evolution.

[15]  J. Manners,et al.  Cross-kingdom gene transfer facilitates the evolution of virulence in fungal pathogens. , 2013, Plant science : an international journal of experimental plant biology.

[16]  J. Spatafora,et al.  Isolation of the MAT1-1 mating type idiomorph and evidence for selfing in the Chinese medicinal fungus Ophiocordyceps sinensis. , 2013, Fungal biology.

[17]  E. Stukenbrock.  Evolution, selection and isolation: a genomic view of speciation in fungal plant pathogens. , 2013, The New phytologist.

[18]  Mira V. Han,et al.  Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3. , 2013, Molecular biology and evolution.

[19]  Joel L. Bargul,et al.  Use of Metarhizium anisopliae Chitinase Genes for Genotyping and Virulence Characterization , 2013, BioMed research international.

[20]  B. Henrissat,et al.  Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes , 2013, Biotechnology for Biofuels.

[21]  K. Katoh,et al.  MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability , 2013, Molecular biology and evolution.

[22]  P. Kirti,et al.  Expression of chitinase genes of Metarhizium anisopliae isolates in lepidopteran pests and on synthetic media , 2012, Journal of basic microbiology.

[23]  Guo-Ping Zhao,et al.  Genomic perspectives on the evolution of fungal entomopathogenicity in Beauveria bassiana , 2012, Scientific Reports.

[24]  Xin Chen,et al.  dbCAN: a web resource for automated carbohydrate-active enzyme annotation , 2012, Nucleic Acids Res..

[25]  Sergey I. Nikolenko,et al.  SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing , 2012, J. Comput. Biol..

[26]  J. Spatafora,et al.  Host jumping onto close relatives and across kingdoms by Tyrannicordyceps (Clavicipitaceae) gen. nov. and Ustilaginoidea_(Clavicipitaceae). , 2012, American journal of botany.

[27]  S. Krasnoff,et al.  Genetic basis of destruxin production in the entomopathogen Metarhizium robertsii , 2012, Current Genetics.

[28]  Mukesh Jain,et al.  NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data , 2012, PloS one.

[29]  M. Hood,et al.  Patterns of Repeat-Induced Point Mutation in Transposable Elements of Basidiomycete Fungi , 2012, Genome biology and evolution.

[30]  B. Wang,et al.  Unveiling the biosynthetic puzzle of destruxins in Metarhizium species , 2012, Proceedings of the National Academy of Sciences.

[31]  Peer Bork,et al.  SMART 7: recent updates to the protein domain annotation resource , 2011, Nucleic Acids Res..

[32]  L. Hartl,et al.  Fungal chitinases: diversity, mechanistic properties and biotechnological potential , 2011, Applied Microbiology and Biotechnology.

[33]  H. Haas,et al.  Iron homeostasis—Achilles’ heel of Aspergillus fumigatus? , 2011, Current opinion in microbiology.

[34]  Christina A. Cuomo,et al.  Comparative Genomics Yields Insights into Niche Adaptation of Plant Vascular Wilt Pathogens , 2011, PLoS pathogens.

[35]  Kai Blin,et al.  antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences , 2011, Nucleic Acids Res..

[36]  Robert D. Finn,et al.  HMMER web server: interactive sequence similarity searching , 2011, Nucleic Acids Res..

[37]  K. Hammond-Kosack,et al.  Analysis of Two in Planta Expressed LysM Effector Homologs from the Fungus Mycosphaerella graminicola Reveals Novel Functional Properties and Varying Contributions to Virulence on Wheat1[W][OA] , 2011, Plant Physiology.

[38]  Walter Pirovano,et al.  BIOINFORMATICS APPLICATIONS , 2022 .

[39]  Guo-Ping Zhao,et al.  Genome Sequencing and Comparative Transcriptomics of the Model Entomopathogenic Fungi Metarhizium anisopliae and M. acridum , 2011, PLoS genetics.

[40]  W. Burgstaller,et al.  Metabolite Toxicology of Fungal Biocontrol Agents , 2011 .

[41]  Simon H. Martin,et al.  Structure and evolution of the Fusarium mating type locus : New insights from the Gibberella fujikuroi complex , 2011 .

[42]  Sonja J. Prohaska,et al.  Proteinortho: Detection of (Co-)orthologs in large-scale analysis , 2011, BMC Bioinformatics.

[43]  Vincent Lombard,et al.  A hierarchical classification of polysaccharide lyases for glycogenomics. , 2010, The Biochemical journal.

[44]  S. Krasnoff,et al.  Secondary metabolites from entomopathogenic Hypocrealean fungi. , 2010, Natural product reports.

[45]  Joseph Heitman,et al.  The Evolution of Sex: a Perspective from the Fungal Kingdom , 2010, Microbiology and Molecular Biology Reviews.

[46]  P. Cornelis,et al.  Iron uptake and homeostasis in microorganisms , 2010 .

[47]  M. Nowrousian,et al.  Functional Characterization of MAT1-1-Specific Mating-Type Genes in the Homothallic Ascomycete Sordaria macrospora Provides New Insights into Essential and Nonessential Sexual Regulators , 2010, Eukaryotic Cell.

[48]  Y. Pei,et al.  Requirement of a Mitogen-Activated Protein Kinase for Appressorium Formation and Penetration of Insect Cuticle by the Entomopathogenic Fungus Beauveria bassiana , 2010, Applied and Environmental Microbiology.

[49]  R. Rodríguez-Sanoja,et al.  Carbohydrate-binding domains: multiplicity of biological roles , 2010, Applied Microbiology and Biotechnology.

[50]  B. Turgeon,et al.  Phylogenomics reveals subfamilies of fungal nonribosomal peptide synthetases and their evolutionary relationships , 2010, BMC Evolutionary Biology.

[51]  Chengshu Wang,et al.  A phosphoketolase Mpk1 of bacterial origin is adaptively required for full virulence in the insect-pathogenic fungus Metarhizium anisopliae. , 2009, Environmental microbiology.

[52]  R. Samson,et al.  Aschersonia aleyrodis, a fungal pathogen of whitefly. II: Application as a biological insecticide in glasshouses , 2009 .

[53]  Toni Gabaldón,et al.  trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses , 2009, Bioinform..

[54]  J. Spatafora,et al.  A combined ITS rDNA and beta-tubulin phylogeny of Thai species of Hypocrella with non-fragmenting ascospores. , 2009, Mycological research.

[55]  Chengshu Wang,et al.  Genetic engineering of fungal biocontrol agents to achieve greater efficacy against insect pests , 2009, Applied Microbiology and Biotechnology.

[56]  E. Birney,et al.  Pfam: the protein families database , 2013, Nucleic Acids Res..

[57]  James K. Hane,et al.  RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences , 2008, BMC Bioinformatics.

[58]  T. Kuromori,et al.  The glycerophosphoryl diester phosphodiesterase-like proteins SHV3 and its homologs play important roles in cell wall organization. , 2008, Plant & cell physiology.

[59]  J. Stenlid,et al.  Evolution of Family 18 Glycoside Hydrolases: Diversity, Domain Structures and Phylogenetic Relationships , 2008, Journal of Molecular Microbiology and Biotechnology.

[60]  G J Davies,et al.  Glycosyltransferases: structures, functions, and mechanisms. , 2008, Annual review of biochemistry.

[61]  T. Giraud,et al.  Speciation in fungi. , 2008, Fungal genetics and biology : FG & B.

[62]  Y. van de Peer,et al.  Evolution and taxonomic distribution of nonribosomal peptide and polyketide synthases. , 2008, Future microbiology.

[63]  K. Hodge,et al.  A monograph of the entomopathogenic genera Hypocrella, Moelleriella, and Samuelsia gen. nov. (Ascomycota, Hypocreales, Clavicipitaceae), and their aschersonia-like anamorphs in the Neotropics , 2008, Studies in mycology.

[64]  V. Seidl.  Chitinases of filamentous fungi: a large group of diverse proteins with multiple physiological functions , 2008 .

[65]  L. Johnson.  Iron and siderophores in fungal-host interactions. , 2008, Mycological research.

[66]  Sofia M. C. Robb,et al.  MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes. , 2007, Genome research.

[67]  M. C. Furlaneto,et al.  Production and Regulation of Cuticle-Degrading Proteases from Beauveria bassiana in the Presence of Rhammatocerus schistocercoides Cuticle , 2008, Current Microbiology.

[68]  M. Marahiel,et al.  Siderophore-Based Iron Acquisition and Pathogen Control , 2007, Microbiology and Molecular Biology Reviews.

[69]  Ken Haynes,et al.  Distinct Roles for Intra- and Extracellular Siderophores during Aspergillus fumigatus Infection , 2007, PLoS pathogens.

[70]  Guosheng Liu,et al.  The siderophore biosynthetic gene SID1, but not the ferroxidase gene FET3, is required for full Fusarium graminearum virulence. , 2007, Molecular plant pathology.

[71]  A. Read,et al.  Can fungal biopesticides control malaria? , 2007, Nature Reviews Microbiology.

[72]  Keith Bradnam,et al.  CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes , 2007, Bioinform..

[73]  Chengshu Wang,et al.  The MAD1 Adhesin of Metarhizium anisopliae Links Adhesion with Blastospore Production and Virulence to Insects, and the MAD2 Adhesin Enables Attachment to Plants , 2007, Eukaryotic Cell.

[74]  A. J. Foster,et al.  Ferricrocin synthesis in Magnaporthe grisea and its role in pathogenicity in rice. , 2007, Molecular plant pathology.

[75]  J. Spatafora,et al.  Phylogenetic classification of Cordyceps and the clavicipitaceous fungi , 2007, Studies in mycology.

[76]  Tilmann Weber,et al.  Phylogenetic analysis of condensation domains in NRPS sheds light on their functional evolution , 2007, BMC Evolutionary Biology.

[77]  Keiko Yoshioka,et al.  NPS6, Encoding a Nonribosomal Peptide Synthetase Involved in Siderophore-Mediated Iron Metabolism, Is a Conserved Virulence Determinant of Plant Pathogenic Ascomycetes[W] , 2006, The Plant Cell Online.

[78]  M. Vainstein,et al.  Isolation, Characterization, and Transcriptional Analysis of the Chitinase chi2 Gene (DQ011663) from the Biocontrol Fungus Metarhizium anisopliae var. anisopliae , 2006, Current Microbiology.

[79]  Christopher J. Rawlings,et al.  PHI-base: a new database for pathogen host interactions , 2005, Nucleic Acids Res..

[80]  C. Kubicek,et al.  A complete survey of Trichoderma chitinases reveals three distinct subgroups of family 18 chitinases , 2005, The FEBS journal.

[81]  M. Moore,et al.  The Aspergillus fumigatus Siderophore Biosynthetic Gene sidA, Encoding l-Ornithine N5-Oxygenase, Is Required for Virulence , 2005, Infection and Immunity.

[82]  T. Giraud,et al.  Repeat-Induced Point Mutation and the Population Structure of Transposable Elements in Microbotryum violaceum , 2005, Genetics.

[83]  Burkhard Morgenstern,et al.  AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints , 2005, Nucleic Acids Res..

[84]  M. Vainstein,et al.  Cuticle-induced endo/exoacting chitinase CHIT30 from Metarhizium anisopliae is encoded by an ortholog of the chi3 gene. , 2005, Research in microbiology.

[85]  R. S. St. Leger,et al.  Variation in gene expression patterns as the insect pathogen Metarhizium anisopliae adapts to different host cuticles or nutrient deprivation in vitro. , 2005, Microbiology.

[86]  Ken Haynes,et al.  Siderophore Biosynthesis But Not Reductive Iron Assimilation Is Essential for Aspergillus fumigatus Virulence , 2004, The Journal of experimental medicine.

[87]  Michael P. Cummings,et al.  PAUP* [Phylogenetic Analysis Using Parsimony (and Other Methods)] , 2004 .

[88]  Robert Finking,et al.  Biosynthesis of nonribosomal peptides1. , 2004, Annual review of microbiology.

[89]  Robert Finking,et al.  Biosynthesis of nonribosomal peptides , 2003 .

[90]  Jimin Pei,et al.  PCMA: fast and accurate multiple sequence alignment based on profile consistency , 2003, Bioinform..

[91]  A. Charnley.  Fungal pathogens of insects: Cuticle degrading enzymes and toxins , 2003 .

[92]  D. Swofford.  PAUP*: Phylogenetic analysis using parsimony (*and other methods), Version 4.0b10 , 2002 .

[93]  M. Stark,et al.  Saccharomyces cerevisiae cell wall chitin, the Kluyveromyces lactis zymocin receptor , 2001, Yeast.

[94]  C. Kubicek,et al.  Regulation of chitinase 33 (chit33) gene expression in Trichoderma harzianum , 2001, Current Genetics.

[95]  J. V. Lenteren,et al.  Persistence of the fungal whitefly pathogen, Aschersonia aleyrodis, on three different plant species , 2000 .

[96]  Michael Y. Galperin,et al.  The COG database: a tool for genome-scale analysis of protein functions and evolution , 2000, Nucleic Acids Res..

[97]  R D Appel,et al.  Protein identification and analysis tools in the ExPASy server. , 1999, Methods in molecular biology.

[98]  J. Bantle,et al.  Toxicity and Pathogenicity Testing of the Insect Pest Control Fungus Metarhizium anisopliae , 1998, Archives of environmental contamination and toxicology.

[99]  J Schultz,et al.  SMART, a simple modular architecture research tool: identification of signaling domains. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[100]  J. C. Lenteren,et al.  Host selection and survival of the parasitoid Encarsia formosa on greenhouse whitefly, Trialeurodes vaporariorum, in the presence of hosts infected with the fungus Aschersonia aleyrodis , 1993 .

[101]  R. S. St. Leger,et al.  Cloning and regulatory analysis of starvation-stress gene, ssgA, encoding a hydrophobin-like protein from the entomopathogenic fungus, Metarhizium anisopliae. , 1992, Gene.

[102]  B Henrissat,et al.  A classification of glycosyl hydrolases based on amino acid sequence similarities. , 1991, The Biochemical journal.

[103]  H. Evans,et al.  Aspects of the genera Hypocrella and Aschersonia as pathogens of coccids and whiteflies. , 1990 .

[104]  J. Fransen.  Control of greenhouse whitefly, Trialeurodes vaporariorum, by the fungus Aschersonia aleyrodis. , 1987 .

[105]  D. Cayley.  Sex in Fungi. , 1930, Nature.

[106]  H. Fawcett.  Citrus Diseases and their Control , 1937, Nature.

[107]  E. Berger.  Natural enemies of scale insects and whiteflies. , 1921 .