mTAGs: taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA genes
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Falk Hildebrand | Shinichi Sunagawa | Silvia G. Acinas | Guillem Salazar | Hans-Joachim Ruscheweyh | S. Sunagawa | F. Hildebrand | S. Acinas | G. Salazar | Hans-Joachim Ruscheweyh | Guillem Salazar
[1] Christian von Mering,et al. MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis , 2017, Bioinform..
[2] J. Bunge,et al. Polymerase chain reaction primers miss half of rRNA microbial diversity , 2009, The ISME Journal.
[3] Aleksandra Tarkowska,et al. Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments , 2018, GigaScience.
[4] Haixu Tang,et al. Comparing Bacterial Communities Inferred from 16s Rrna Gene Sequencing and Shotgun Metagenomics , 2011, Pacific Symposium on Biocomputing.
[5] Francesco Asnicar,et al. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 , 2019, Nature Biotechnology.
[6] Gerhard G. Thallinger,et al. Wx Scout Fashion Sneaker Splash Navy Women's Keds qAS4tR1wn4 for bawln.com , 2009 .
[7] Tutorial: assessing metagenomics software with the CAMI benchmarking toolkit. , 2021, Nature protocols.
[8] Paul J. McMurdie,et al. DADA2: High resolution sample inference from Illumina amplicon data , 2016, Nature Methods.
[9] Robert C. Edgar,et al. UNOISE2: improved error-correction for Illumina 16S and ITS amplicon sequencing , 2016, bioRxiv.
[10] Chao Xie,et al. RiboTagger: fast and unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome surveys , 2016, BMC Bioinformatics.
[11] Johan Bengtsson-Palme,et al. metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data , 2015, Molecular ecology resources.
[12] J. Tiedje,et al. Microbial Community Analysis with Ribosomal Gene Fragments from Shotgun Metagenomes , 2015, Applied and Environmental Microbiology.
[13] Francisco M. Cornejo-Castillo,et al. Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities. , 2014, Environmental microbiology.
[14] Vanja Klepac-Ceraj,et al. PCR-Induced Sequence Artifacts and Bias: Insights from Comparison of Two 16S rRNA Clone Libraries Constructed from the Same Sample , 2005, Applied and Environmental Microbiology.
[15] William A. Walters,et al. QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.
[16] Marcus J. Claesson,et al. Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions , 2010, Nucleic acids research.
[17] Pelin Yilmaz,et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools , 2012, Nucleic Acids Res..