Phylogenetic relationships, host affinity, and geographic structure of boreal and arctic endophytes from three major plant lineages.

[1]  Walter P. Carson,et al.  TROPICAL FOREST COMMUNITY ECOLOGY , 2008 .

[2]  Rytas Vilgalys,et al.  Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR , 2007, Mycologia.

[3]  F. Lutzoni,et al.  Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots? , 2007, Ecology.

[4]  Andrew Meade,et al.  Mixture models in phylogenetic inference , 2007, Mathematics of Evolution and Phylogeny.

[5]  Rytas Vilgalys,et al.  Fungal Community Analysis by Large-Scale Sequencing of Environmental Samples , 2005, Applied and Environmental Microbiology.

[6]  A. Miller,et al.  Performance of four ribosomal DNA regions to infer higher-level phylogenetic relationships of inoperculate euascomycetes (Leotiomyceta). , 2005, Molecular phylogenetics and evolution.

[7]  A. Arnold,et al.  Ecology and evolution of fungal endophytes and their roles against insects. , 2005 .

[8]  Olivier Gascuel,et al.  Mathematics of Evolution and Phylogeny , 2005 .

[9]  A. Dahlberg,et al.  Colonization by arbuscular mycorrhizal and fine endophytic fungi in herbaceous vegetation in the Canadian High Arctic , 2004 .

[10]  Michael P. Cummings,et al.  PAUP* [Phylogenetic Analysis Using Parsimony (and Other Methods)] , 2004 .

[11]  D. Hibbett,et al.  Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. , 2004, American journal of botany.

[12]  F. Lutzoni,et al.  Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory. , 2004, Molecular phylogenetics and evolution.

[13]  M. Pagel,et al.  A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data. , 2004, Systematic biology.

[14]  K. Hyde,et al.  Biodiversity of palm fungi in the tropics: are global fungal diversity estimates realistic? , 1999, Biodiversity & Conservation.

[15]  D. Tilman,et al.  Fungal endophytes limit pathogen damage in a tropical tree , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[16]  R. Vilgalys,et al.  Endophytic Xylaria (Xylariaceae) among liverworts and angiosperms: phylogenetics, distribution, and symbiosis. , 2003, American journal of botany.

[17]  S. Lindow,et al.  Microbiology of the Phyllosphere , 2003, Applied and Environmental Microbiology.

[18]  D. Maddison,et al.  MacClade 4: analysis of phy-logeny and character evolution , 2003 .

[19]  C. Schardl,et al.  Evolutionary Origins and Ecological Consequences of Endophyte Symbiosis with Grasses , 2002, The American Naturalist.

[20]  F. Kauff,et al.  Phylogeny of the Gyalectales and Ostropales (Ascomycota, Fungi): among and within order relationships based on nuclear ribosomal RNA small and large subunits. , 2002, Molecular phylogenetics and evolution.

[21]  S. Maher,et al.  Field Performance of Cucurbit and Tomato Plants Colonized with a Nonpathogenic, Mutualistic Mutant (path-1) of Colletotrichum magna (Teleomorph: Glomerella magna; Jenkins & Winstead) , 2002 .

[22]  Nan Yu,et al.  The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs , 2002, BMC Bioinformatics.

[23]  D. Hawksworth.  The magnitude of fungal diversity: the 1.5 million species estimate revisited * * Paper presented at , 2001 .

[24]  A. Jumpponen.  Dark septate endophytes – are they mycorrhizal? , 2001, Mycorrhiza.

[25]  John P. Huelsenbeck,et al.  MRBAYES: Bayesian inference of phylogenetic trees , 2001, Bioinform..

[26]  Mark Pagel,et al.  Major fungal lineages are derived from lichen symbiotic ancestors , 2022 .

[27]  P. Wagner,et al.  Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology. , 2000, Systematic biology.

[28]  O. Petrini,et al.  Endophytic fungi associated with palms , 2000 .

[29]  J. Zimmerman.  Tropical Forest Ecology , 2000 .

[30]  P. Coley,et al.  Are tropical fungal endophytes hyperdiverse , 2000 .

[31]  James F. White,et al.  An Overview of Endophytic Microbes: Endophytism Defined , 2000 .

[32]  Hugh D. Wilson,et al.  Synthesis of the North American Flora, version 1.0 , 2000 .

[33]  W R Pearson,et al.  Flexible sequence similarity searching with the FASTA3 program package. , 2000, Methods in molecular biology.

[34]  K. Saikkonen,et al.  FUNGAL ENDOPHYTES: A Continuum of Interactions with Host Plants , 1998 .

[35]  P. Green,et al.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment. , 1998, Genome research.

[36]  P Green,et al.  Base-calling of automated sequencer traces using phred. II. Error probabilities. , 1998, Genome research.

[37]  David Posada,et al.  MODELTEST: testing the model of DNA substitution , 1998, Bioinform..

[38]  S. Hambleton,et al.  Fungal endophytes from the roots of alpine and boreal Ericaceae , 1997 .

[39]  E. Kellogg,et al.  Testing for Phylogenetic Conflict Among Molecular Data Sets in the Tribe Triticeae (Gramineae) , 1996 .

[40]  G. Haase.  Analysis of genes coding for small-subunit rRNA sequences in studying phylogenetics of dematiaceous fungal pathogens , 1996, Journal of clinical microbiology.

[41]  K. Kjer,et al.  Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: an example of alignment and data presentation from the frogs. , 1995, Molecular phylogenetics and evolution.

[42]  F. Graf,et al.  FUNGAL ENDOPHYTES OF DRYAS OCTOPETALA FROM A HIGH ARCTIC POLAR SEMIDESERT AND FROM THE SWISS ALPS , 1995 .

[43]  R. Zheng,et al.  Rhizomucor endophyticus sp. nov., an endophytic zygomycetes from higher plants , 1995 .

[44]  T. Bruns,et al.  ITS primers with enhanced specificity for basidiomycetes ‐ application to the identification of mycorrhizae and rusts , 1993, Molecular ecology.

[45]  J. A. Johnson,et al.  Isolation of fungal endophytes from black spruce (Picea mariana) dormant buds and needles from New Brunswick, Canada , 1992 .

[46]  A. Gargas,et al.  Polymerase Chain Reaction (PCR) Primers for Amplifying and Sequencing Nuclear 18S rDNA from Lichenized Fungi , 1992 .

[47]  David L. Hawksworth,et al.  The fungal dimension of biodiversity: magnitude, significance, and conservation , 1991 .

[48]  R. Vilgalys,et al.  Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species , 1990, Journal of bacteriology.

[49]  Thomas J. White,et al.  PCR protocols: a guide to methods and applications. , 1990 .

[50]  T. White.  Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics , 1990 .

[51]  J. Stone.  Initiation and development of latent infections by Rhabdocline parkeri on Douglas-fir , 1987 .

[52]  O. Petrini.  Taxonomy of endophytic fungi of aerial plant tissues , 1986 .

[53]  W. Cody,et al.  Vascular Plants of Continental Northwest Territories, Canada , 1981 .

[54]  G. Carroll,et al.  Studies on the incidence of coniferous needle endophytes in the Pacific Northwest , 1978 .