Workflow for analysis of high mass accuracy salivary data set using MaxQuant and ProteinPilot search algorithm
暂无分享,去创建一个
John Chilton | Thomas McGowan | Pratik Jagtap | P. Jagtap | T. Griffin | E. Arriaga | S. Seymour | Thomas McGowan | S. Bandhakavi | LeeAnn Higgins | J. Chilton | M. Stone | LeeAnn Higgins | Edgar A. Arriaga | Timothy J. Griffin | Sricharan Bandhakavi | Rongxiao Sa | Matthew D. Stone | Sean L. Seymour | Rongxiao Sa
[1] Gilbert S. Omenn,et al. Alternative Splice Variants, a New Class of Protein Cancer Biomarker Candidates: Findings in Pancreatic Cancer and Breast Cancer with Systems Biology Implications , 2010, Disease markers.
[2] Judith A J Steen,et al. When less can yield more – Computational preprocessing of MS/MS spectra for peptide identification , 2009, Proteomics.
[3] Leonid Zamdborg,et al. Tandem mass spectrometry with ultrahigh mass accuracy clarifies peptide identification by database retrieval. , 2009, Journal of proteome research.
[4] John D. Venable,et al. Improving protein identification sensitivity by combining MS and MS/MS information for shotgun proteomics using LTQ-Orbitrap high mass accuracy data. , 2008, Analytical chemistry.
[5] Timothy J Griffin,et al. Deep metaproteomic analysis of human salivary supernatant , 2012, Proteomics.
[6] Jürgen Cox,et al. A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics , 2009, Nature Protocols.
[7] M. Mann,et al. Precision proteomics: The case for high resolution and high mass accuracy , 2008, Proceedings of the National Academy of Sciences.
[8] John R Yates,et al. Proteomics by mass spectrometry: approaches, advances, and applications. , 2009, Annual review of biomedical engineering.
[9] Gordon A. Anderson,et al. DtaRefinery, a Software Tool for Elimination of Systematic Errors from Parent Ion Mass Measurements in Tandem Mass Spectra Data Sets* , 2009, Molecular & Cellular Proteomics.
[10] Jürgen Cox,et al. Computational principles of determining and improving mass precision and accuracy for proteome measurements in an Orbitrap , 2009, Journal of the American Society for Mass Spectrometry.
[11] Sean L Seymour,et al. Nonlinear fitting method for determining local false discovery rates from decoy database searches. , 2008, Journal of proteome research.
[12] A. Makarov,et al. Orbitrap Mass Analyzer – Overview and Applications in Proteomics , 2006, Proteomics.
[13] M. Mann,et al. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification , 2008, Nature Biotechnology.
[14] M. Mann,et al. On the Proper Use of Mass Accuracy in Proteomics* , 2007, Molecular & Cellular Proteomics.
[15] David L. Tabb,et al. Performance Metrics for Liquid Chromatography-Tandem Mass Spectrometry Systems in Proteomics Analyses* , 2009, Molecular & Cellular Proteomics.
[16] Alexander Makarov,et al. Orbitrap Mass Analyzer - Overview and Applications , 2006 .
[17] T. Griffin,et al. A dynamic range compression and three-dimensional peptide fractionation analysis platform expands proteome coverage and the diagnostic potential of whole saliva. , 2009, Journal of proteome research.
[18] Sean L Seymour,et al. The Paragon Algorithm, a Next Generation Search Engine That Uses Sequence Temperature Values and Feature Probabilities to Identify Peptides from Tandem Mass Spectra*S , 2007, Molecular & Cellular Proteomics.