Noncoding Rna Transcripts

Recent analyses of the human genome and available data about the other higher eukaryotic genomes have revealed that, in contrast to Eubacteria and Archaea, only a small fraction of the genetic material (ca 1.5%) codes for proteins. Most of genomic DNA and its RNA transcripts are involved in regulation of gene expression, which can be exerted at either the transcriptional level, controlling whether a gene is transcribed and to what extent, or at the post-translational level, regulating the fate of the transcribed RNA molecules, including their stability, efficiency of their translation and subcellular localization. Noncoding RNA genes produce functional RNA molecules (ncRNAs) rather than encoding proteins. These stable RNAs act by multiple mechanisms such as RNA-RNA base pairing, RNA-protein interactions and intrinsic RNA activity, as well as regulate diverse cellular functions, including RNA processing, mRNA stability, translation, protein stability and secretion. Non-protein-coding RNAs are known to play significant roles. Along with transfer RNAs, ribosomal RNAs and mRNAs, ncRNAs contribute to gene splicing, nucleotide modification, protein transport and regulation of gene expression.

[1]  Fabienne Thomarat,et al.  Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi , 2001, Nature.

[2]  Stephen M. Mount,et al.  The genome sequence of Drosophila melanogaster. , 2000, Science.

[3]  G. Storz An Expanding Universe of Noncoding RNAs , 2002, Science.

[4]  Timothy B. Stockwell,et al.  The Sequence of the Human Genome , 2001, Science.

[5]  D. Mccormick Sequence the Human Genome , 1986, Bio/Technology.

[6]  C. Gissi,et al.  Untranslated regions of mRNAs , 2002, Genome Biology.

[7]  Michael Y. Galperin,et al.  Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs) , 2000, Genome Biology.

[8]  Thomas A. Steitz,et al.  The involvement of RNA in ribosome function , 2002, Nature.

[9]  S. Brantl,et al.  Antisense-RNA regulation and RNA interference. , 2002, Biochimica et biophysica acta.

[10]  Jan Barciszewski,et al.  Beyond the proteome: non-coding regulatory RNAs , 2002, Genome Biology.

[11]  J. Mattick Non‐coding RNAs: the architects of eukaryotic complexity , 2001, EMBO reports.

[12]  W. Filipowicz,et al.  Biogenesis of small nucleolar ribonucleoproteins. , 2002, Current opinion in cell biology.

[13]  P. Schattner Searching for RNA genes using base-composition statistics. , 2002, Nucleic acids research.

[14]  Phillip D Zamore,et al.  RNAi: nature abhors a double-strand. , 2002, Current opinion in genetics & development.

[15]  Maciej Szymanski,et al.  Non-coding, mRNA-like RNAs database Y2K , 2000, Nucleic Acids Res..

[16]  D. Barlow,et al.  Quantitative genetics: Turning up the heat on QTL mapping , 2002, Nature Reviews Genetics.

[17]  M. Hentze,et al.  A new era for the RNA world , 2000, EMBO reports.

[18]  S. Eddy Non–coding RNA genes and the modern RNA world , 2001, Nature Reviews Genetics.

[19]  B. Barrell,et al.  The genome sequence of Schizosaccharomyces pombe , 2002, Nature.