Prediction of LncRNA Subcellular Localization with Deep Learning from Sequence Features
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[1] Zhen Cao,et al. The lncLocator: a subcellular localization predictor for long non‐coding RNAs based on a stacked ensemble classifier , 2018, Bioinform..
[2] Dong Wang,et al. iLoc‐lncRNA: predict the subcellular location of lncRNAs by incorporating octamer composition into general PseKNC , 2018, Bioinform..
[3] Ole Winther,et al. DeepLoc: prediction of protein subcellular localization using deep learning , 2017, Bioinform..
[4] Sarah M. Assmann,et al. Structure-seq2: sensitive and accurate genome-wide profiling of RNA structure in vivo , 2017, Nucleic acids research.
[5] Yan Huang,et al. RNALocate: a resource for RNA subcellular localizations , 2016, Nucleic Acids Res..
[6] Lior Pachter,et al. Differential analysis of RNA-seq incorporating quantification uncertainty , 2016, Nature Methods.
[7] Ananth Grama,et al. EP-DNN: A Deep Neural Network-Based Global Enhancer Prediction Algorithm , 2016, Scientific Reports.
[8] Sarah C. Ayling,et al. The Ensembl gene annotation system , 2016, Database J. Biol. Databases Curation.
[9] Lior Pachter,et al. Near-optimal probabilistic RNA-seq quantification , 2016, Nature Biotechnology.
[10] Farooq Rashid,et al. Long Non-coding RNAs in the Cytoplasm , 2016, Genom. Proteom. Bioinform..
[11] Yasir Arfat,et al. Structure Prediction: New Insights into Decrypting Long Noncoding RNAs , 2016, International journal of molecular sciences.
[12] K. Morris. Long Non-coding RNAs in Human Disease , 2016, Current Topics in Microbiology and Immunology.
[13] J. Rinn,et al. Linking RNA biology to lncRNAs , 2015, Genome research.
[14] Xiaohui Xie,et al. DANN: a deep learning approach for annotating the pathogenicity of genetic variants , 2015, Bioinform..
[15] J. Rinn,et al. Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution , 2015, Genome Biology.
[16] S. Dhanasekaran,et al. The landscape of long noncoding RNAs in the human transcriptome , 2015, Nature Genetics.
[17] B. Tjaden,et al. De novo assembly of bacterial transcriptomes from RNA-seq data , 2015, Genome Biology.
[18] F. Niazi,et al. A Novel RNA Motif Mediates the Strict Nuclear Localization of a Long Noncoding RNA , 2014, Molecular and Cellular Biology.
[19] Frank Grützner,et al. The evolution of lncRNA repertoires and expression patterns in tetrapods , 2014, Nature.
[20] Manolis Kellis,et al. Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals , 2014, Genome research.
[21] E. Cuppen,et al. Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes , 2014, Genome Biology.
[22] Sarah Geisler,et al. RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts , 2013, Nature Reviews Molecular Cell Biology.
[23] Brendan J. Frey,et al. A compendium of RNA-binding motifs for decoding gene regulation , 2013, Nature.
[24] V. Bajic,et al. On the classification of long non-coding RNAs , 2013, RNA biology.
[25] Data production leads,et al. An integrated encyclopedia of DNA elements in the human genome , 2012 .
[26] David G. Knowles,et al. The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression , 2012, Genome research.
[27] Raymond K. Auerbach,et al. An Integrated Encyclopedia of DNA Elements in the Human Genome , 2012, Nature.
[28] Nadav S. Bar,et al. Landscape of transcription in human cells , 2012, Nature.
[29] David J. Arenillas,et al. In Silico Detection of Sequence Variations Modifying Transcriptional Regulation , 2007, PLoS Comput. Biol..
[30] Ed Hurt,et al. Exporting RNA from the nucleus to the cytoplasm , 2007, Nature Reviews Molecular Cell Biology.
[31] J. Harrow,et al. GENCODE: producing a reference annotation for ENCODE , 2006, Genome Biology.
[32] Oliver Kohlbacher,et al. MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition , 2006, Bioinform..
[33] D. Garfinkel,et al. Calculated intracellular distributions of dicarboxylic acids in rat liver. , 1971, Computers and biomedical research, an international journal.