The genome sequence and insights into the immunogenetics of the bananaquit (Passeriformes: Coereba flaveola)
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[1] J. DeWoody,et al. Genomic Landscape of Long Terminal Repeat Retrotransposons (LTR-RTs) and Solo LTRs as Shaped by Ectopic Recombination in Chicken and Zebra Finch , 2016, Journal of Molecular Evolution.
[2] R. Jia,et al. CpG oligodeoxynucleotide-specific goose TLR21 initiates an anti-viral immune response against NGVEV but not AIV strain H9N2 infection. , 2016, Immunobiology.
[3] M. Grabherr,et al. Evolution of Darwin’s finches and their beaks revealed by genome sequencing , 2015, Nature.
[4] I. Jamieson,et al. Toll-like receptor diversity in 10 threatened bird species: relationship with microsatellite heterozygosity , 2015, Conservation Genetics.
[5] Andreas R. Pfenning,et al. Comparative genomics reveals insights into avian genome evolution and adaptation , 2014, Science.
[6] Yanzhu Ji,et al. The Genome Sequence of a Widespread Apex Predator, the Golden Eagle (Aquila chrysaetos) , 2014, PloS one.
[7] Björn Usadel,et al. Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..
[8] C. Witt,et al. Metabolic ‘engines’ of flight drive genome size reduction in birds , 2014, Proceedings of the Royal Society B: Biological Sciences.
[9] Matthew Fraser,et al. InterProScan 5: genome-scale protein function classification , 2014, Bioinform..
[10] J. DeWoody,et al. Hosts, parasites, and horizontal gene transfer. , 2013, Trends in parasitology.
[11] Bhagya K. Wijayawardena,et al. Of contigs and quagmires: next‐generation sequencing pitfalls associated with transcriptomic studies , 2013, Molecular ecology resources.
[12] Gordon Gremme,et al. GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations , 2013, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[13] Alberto Policriti,et al. GAM-NGS: genomic assemblies merger for next generation sequencing , 2013, BMC Bioinformatics.
[14] Alexey A. Gurevich,et al. QUAST: quality assessment tool for genome assemblies , 2013, Bioinform..
[15] Jun Wang,et al. Genomic Diversity and Evolution of the Head Crest in the Rock Pigeon , 2013, Science.
[16] Jian Wang,et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler , 2012, GigaScience.
[17] W. Pirovano,et al. Toward almost closed genomes with GapFiller , 2012, Genome Biology.
[18] Pablo Cingolani,et al. © 2012 Landes Bioscience. Do not distribute. , 2022 .
[19] Mark Yandell,et al. MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects , 2011, BMC Bioinformatics.
[20] Ioannis Xenarios,et al. T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension , 2011, Nucleic Acids Res..
[21] S. Edwards,et al. Molecular evolution of the toll-like receptor multigene family in birds. , 2011, Molecular biology and evolution.
[22] D. Golenbock,et al. Toll-Like Receptors Participate in Macrophage Activation and Intracellular Control of Leishmania (Viannia) panamensis , 2011, Infection and Immunity.
[23] Carl Kingsford,et al. A fast, lock-free approach for efficient parallel counting of occurrences of k-mers , 2011, Bioinform..
[24] Helga Thorvaldsdóttir,et al. Integrative Genomics Viewer , 2011, Nature Biotechnology.
[25] M. DePristo,et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.
[26] R. Brownlie,et al. Avian toll-like receptors , 2010, Cell and Tissue Research.
[27] T. Graves,et al. Gene duplication and fragmentation in the zebra finch major histocompatibility complex , 2010, BMC Biology.
[28] Patricia C. Babbitt,et al. Annotation Error in Public Databases: Misannotation of Molecular Function in Enzyme Superfamilies , 2009, PLoS Comput. Biol..
[29] A. T. Lloyd,et al. The avian Toll-Like receptor pathway--subtle differences amidst general conformity. , 2009, Developmental and comparative immunology.
[30] Jeanette C Papp,et al. The value of avian genomics to the conservation of wildlife , 2009, BMC Genomics.
[31] Steven J. M. Jones,et al. Abyss: a Parallel Assembler for Short Read Sequence Data Material Supplemental Open Access , 2022 .
[32] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .
[33] C. Hughes,et al. Support for the minimal essential MHC hypothesis: a parrot with a single, highly polymorphic MHC class II B gene , 2008, Immunogenetics.
[34] K. Magor,et al. The duck toll like receptor 7: genomic organization, expression and function. , 2008, Molecular immunology.
[35] Sofia M. C. Robb,et al. MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes. , 2007, Genome research.
[36] R. Ricklefs,et al. The dynamic evolutionary history of the bananaquit (Coereba flaveola) in the Caribbean revealed by a multigene analysis , 2008, BMC Evolutionary Biology.
[37] Keith Bradnam,et al. CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes , 2007, Bioinform..
[38] Af Smit,et al. RepeatMasker software program (computer program), ver. 3.1.8. Seattle: Institute for Systems Biology. , 2007 .
[39] S. Akira,et al. Toll-like receptors and innate immunity , 2006, Journal of Molecular Medicine.
[40] Ronald E. Bontrop,et al. Immunogenetics , 2005, Genes and Immunity.
[41] S. Bensch,et al. Associations between malaria and MHC genes in a migratory songbird , 2005, Proceedings of the Royal Society B: Biological Sciences.
[42] N. Bumstead,et al. Identification and characterization of a functional, alternatively spliced Toll‐like receptor 7 (TLR7) and genomic disruption of TLR8 in chickens , 2005, Immunology.
[43] S. Akira,et al. Induction of Proinflammatory Responses in Macrophages by the Glycosylphosphatidylinositols of Plasmodium falciparum , 2005, Journal of Biological Chemistry.
[44] D. Gowda,et al. Induction of Proinflammatory Responses in Macrophages by the Glycosylphosphatidylinositols of Plasmodium falciparum , 2005, Journal of Biological Chemistry.
[45] Daniel G Peterson,et al. The repetitive landscape of the chicken genome. , 2004, Genome research.
[46] G. Valkiūnas. Avian Malaria Parasites and other Haemosporidia , 2004 .
[47] Eldredge Bermingham,et al. Evolutionary relationships, cospeciation, and host switching in avian malaria parasites. , 2004, Systematic biology.
[48] Peter Parham,et al. Nomenclature for the major histocompatibility complexes of different species: a proposal , 2004, Immunogenetics.
[49] Mario Stanke,et al. Gene prediction with a hidden Markov model and a new intron submodel , 2003, ECCB.
[50] David A. Hume,et al. A Guide to the Mammalian Genome , 2003 .
[51] J. Doležel,et al. Nuclear DNA content and genome size of trout and human. , 2003, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[52] S. Edwards,et al. Evolutionary Dynamics of Intron Size, Genome Size, and Physiological Correlates in Archosaurs , 2002, The American Naturalist.
[53] P. Gros,et al. Susceptibility to malaria as a complex trait: big pressure from a tiny creature. , 2002, Human molecular genetics.
[54] C. Hess,et al. The Evolution of the Major Histocompatibility Complex in Birds , 2002 .
[55] S. Gandon,et al. Local adaptation, evolutionary potential and host–parasite coevolution: interactions between migration, mutation, population size and generation time , 2002 .
[56] B. Kobe,et al. The leucine-rich repeat as a protein recognition motif. , 2001, Current opinion in structural biology.
[57] H. Wittzell,et al. Mhc diversity in two passerine birds: no evidence for a minimal essential Mhc , 2000, Immunogenetics.
[58] B. Grant,et al. Mhc class II genes of Darwin’s Finches: divergence by point mutations and reciprocal recombination , 2000 .
[59] G. Benson,et al. Tandem repeats finder: a program to analyze DNA sequences. , 1999, Nucleic acids research.
[60] R. Griffiths,et al. A DNA test to sex most birds , 1998, Molecular ecology.
[61] R. Cann,et al. Mhc Allelic Diversity and Modern Human Origins , 1997, Journal of Molecular Evolution.
[62] T Gojobori,et al. Large-scale search for genes on which positive selection may operate. , 1996, Molecular biology and evolution.
[63] A. Hughes,et al. Natural selection on Plasmodium surface proteins. , 1995, Molecular and biochemical parasitology.
[64] J. Kaufman,et al. A “Minimal Essential Mhc” and an “Unrecognized Mhc”: Two Extremes in Selection for Polymorphism , 1995, Immunological reviews.
[65] A. Hughes. Positive selection and interallelic recombination at the merozoite surface antigen-1 (MSA-1) locus of Plasmodium falciparum. , 1992, Molecular biology and evolution.
[66] Andrew J. McMichael,et al. Common West African HLA antigens are associated with protection from severe malaria , 1991, Nature.
[67] C. Auffray,et al. Isolation of chicken major histocompatibility complex class II (B‐L) beta chain sequences: comparison with mammalian beta chains and expression in lymphoid organs. , 1988, The EMBO journal.
[68] M. A. Saper,et al. The foreign antigen binding site and T cell recognition regions of class I histocompatibility antigens , 1987, Nature.
[69] R M May,et al. Epidemiology and genetics in the coevolution of parasites and hosts , 1983, Proceedings of the Royal Society of London. Series B. Biological Sciences.