BioMed Central Review
暂无分享,去创建一个
David L Abel | Jack T Trevors | Brendan M Leung | M. Fraser | J. Trevors | B. Tsang | Xiaojuan Yan | W. Thompson | D. L. Abel | Arezu Jahani-Asl | J. T. Trevors | Email David | T. Trevors
[1] R. Shapiro. Comments on `Concentration by Evaporation and the Prebiotic Synthesis of Cytosine' , 2002, Origins of life and evolution of the biosphere.
[2] W. H. Zurek,et al. Thermodynamic cost of computation, algorithmic complexity and the information metric , 1989, Nature.
[3] E. Rhoades,et al. Watching proteins fold one molecule at a time , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[4] Pierre-Alain Monnard,et al. Preparation of vesicles from nonphospholipid amphiphiles. , 2003, Methods in enzymology.
[5] M. Conrad. Unity of measurement and motion. , 2001, Bio Systems.
[6] H P Yockey,et al. A calculation of the probability of spontaneous biogenesis by information theory. , 1977, Journal of theoretical biology.
[7] Hubert P. Yockey,et al. Information theory, evolution and the origin of life , 2005, Inf. Sci..
[8] James H. Moor,et al. Knowledge and the Flow of Information. , 1982 .
[9] A. Trewavas. Seven clues to the origin of life , 1987 .
[10] Gerald F. Joyce,et al. 2 Prospects for Understanding the Origin of the RNA World , 1999 .
[11] Hubert P. Yockey,et al. Origin of Life on Earth and Shannon's Theory of Communication , 2000, Comput. Chem..
[12] S M Pincus,et al. Irregularity and asynchrony in biologic network signals. , 2000, Methods in enzymology.
[13] Jack T. Trevors,et al. MORE THAN METAPHOR: GENOMES ARE OBJECTIVE SIGN SYSTEMS , 2006 .
[14] H. Pattee. On the origin of macromolecular sequences. , 1961, Biophysical Journal.
[15] Ilya Prigogine,et al. From Being To Becoming , 1980 .
[16] Abraham Lempel,et al. On the Complexity of Finite Sequences , 1976, IEEE Trans. Inf. Theory.
[17] L. Floridi. Blackwell Guide to the Philosophy of Computing and Information , 2003 .
[18] A. Cairns-smith,et al. The origin of life and the nature of the primitive gene. , 1966, Journal of theoretical biology.
[19] A. Cairns-smith. Takeover mechanisms and early biochemical evolution. , 1977, Bio Systems.
[20] Algorithmic complexity of a protein. , 1996 .
[21] Dewey. Algorithmic complexity of a protein. , 1996, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.
[22] William P. Alston,et al. Knowledge and the Flow of Information , 1985 .
[23] M. Eigen,et al. Selection and self-organization of self-reproducing macromolecules under the constraint of constant flux. , 1979, Biophysical chemistry.
[24] Christian M. Reidys,et al. Bio-molecular Shapes and Algebraic Structures , 1996, Comput. Chem..
[25] G. Pályi,et al. Fundamentals of Life , 2002 .
[26] M. Legge,et al. The protein folds as platonic forms: new support for the pre-Darwinian conception of evolution by natural law. , 2002, Journal of theoretical biology.
[27] N. Cocchiarella,et al. Situations and Attitudes. , 1986 .
[28] Freeman J. Dyson,et al. A model for the origin of life , 2005, Journal of Molecular Evolution.
[29] T. D. Schneider,et al. Information content of individual genetic sequences. , 1997, Journal of theoretical biology.
[30] A. Mills,et al. Manual of environmental microbiology. , 2007 .
[31] J. Schnakenberg,et al. G. Nicolis und I. Prigogine: Self‐Organization in Nonequilibrium Systems. From Dissipative Structures to Order through Fluctuations. J. Wiley & Sons, New York, London, Sydney, Toronto 1977. 491 Seiten, Preis: £ 20.–, $ 34.– , 1978 .
[32] M. Nashimoto,et al. The RNA/protein symmetry hypothesis: experimental support for reverse translation of primitive proteins. , 2001, Journal of theoretical biology.
[33] GEORGE I. BELL,et al. Evolution of Simple Sequence Repeats , 1996, Comput. Chem..
[34] Richard W. Hamming,et al. Coding and Information Theory , 1980 .
[35] Donald C. Mikulecky,et al. Network Thermodynamics and Complexity: A Transition to Relational Systems Theory , 2001, Comput. Chem..
[36] M. Eigen. Selforganization of matter and the evolution of biological macromolecules , 1971, Naturwissenschaften.
[37] Douglas W. Smith. Biocomputing: informatics and genome projects. , 1994 .
[38] C. Adami,et al. Evolution of Biological Complexity , 2000, Proc. Natl. Acad. Sci. USA.
[39] Trevor I. Dix,et al. Sequence Complexity for Biological Sequence Analysis , 2000, Comput. Chem..
[40] H. P. Yockey,et al. Information Theory And Molecular Biology , 1992 .
[41] R. Guimarães. Linguistics of biomolecules and the protein-first hypothesis for the origins of cells , 1995 .
[42] L S Liebovitch,et al. Is there an error correcting code in the base sequence in DNA? , 1996, Biophysical journal.
[43] Jacques Ricard,et al. What do we mean by biological complexity? , 2003, Comptes rendus biologies.
[44] H P Yockey,et al. Self organization origin of life scenarios and information theory. , 1981, Journal of theoretical biology.
[45] Paul M. B. Vitányi,et al. An Introduction to Kolmogorov Complexity and Its Applications , 1993, Graduate Texts in Computer Science.
[46] Gertrudis Van de Vijver,et al. Evolutionary Systems Biological and Epistemological Perspectives on Selection and Self-Organization , 1998 .
[47] Jon Umerez,et al. Semantic Closure: A Guiding Notion to Ground Artificial Life , 1995, ECAL.
[48] M. Eigen,et al. The Hypercycle: A principle of natural self-organization , 2009 .
[49] U. Bhalla,et al. Complexity in biological signaling systems. , 1999, Science.
[50] B. Ganem. RNA world , 1987, Nature.
[51] H. Pattee. Irreducible and complementary semiotic forms , 2001 .
[52] Robert Rosen,et al. Foundations of mathematical biology , 1972 .
[53] K. Popper,et al. The Logic of Scientific Discovery , 1960 .
[54] L F Landweber,et al. Do Proteins Predate DNA? , 1999, Science.
[55] Émile Borel,et al. Probabilities and Life , 1962 .
[56] Charles H. Bennett. Logical depth and physical complexity , 1988 .
[57] Peter Cariani,et al. Towards an Evolutionary Semiotics: The Emergence of New Sign-Functions in Organisms and Devices , 1998 .
[58] R. Shapiro,et al. Prebiotic cytosine synthesis: a critical analysis and implications for the origin of life. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[59] H H Pattee,et al. The physics of symbols: bridging the epistemic cut. , 2001, Bio Systems.
[60] David C. Bradley. The Genome Chose Its Alphabet With Care , 2002, Science.
[61] J. Farris. CONJECTURES AND REFUTATIONS , 1995, Cladistics : the international journal of the Willi Hennig Society.
[62] R. Badii,et al. Complexity: Hierarchical Structures and Scaling in Physics , 1997 .
[63] J. Ferris,et al. Oligomerization of ribonucleotides on montmorillonite: reaction of the 5'-phosphorimidazolide of adenosine. , 1992, Science.
[64] C. Ofria,et al. Genome complexity, robustness and genetic interactions in digital organisms , 1999, Nature.
[65] Chun-Hsien Huang,et al. Montmorillonite: A multifunctional mineral catalyst for the prebiological formation of phosphate esters , 2005, Origins of life and evolution of the biosphere.
[66] A K Konopka,et al. Complexity charts can be used to map functional domains in DNA. , 1990, Genetic analysis, techniques and applications.
[67] J. Ferris,et al. Sequence- and regioselectivity in the montmorillonite-catalyzed synthesis of RNA. , 2003, Journal of the American Chemical Society.
[68] Evandro Agazzi,et al. What is Complexity , 2002 .
[69] Richard Gordon,et al. Evolution Escapes Rugged Fitness Landscapes by Gene Or Genome Doubling: the Blessing of Higher Dimensionality , 1994, Computers and Chemistry.
[70] Howard Hunt Pattee,et al. Artificial Life Needs a Real Epistemology , 1995 .
[71] J Cairns,et al. Cold spring harbor. , 1991, Science.
[72] J. Collado-Vides. Integrative Approaches to Molecular Biology , 1996 .
[73] M. Eigen. Molecular self-organization and the early stages of evolution , 1971, Quarterly Reviews of Biophysics.
[74] Wenhua Huang,et al. Synthesis of 35-40 mers of RNA oligomers from unblocked monomers. A simple approach to the RNA world. , 2003, Chemical communications.
[75] M. Eigen,et al. The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle. , 1977, Die Naturwissenschaften.
[76] T. D. Schneider,et al. Evolution of biological information. , 2000, Nucleic acids research.
[77] H H Pattee,et al. Complementarity vs. reduction as explanation of biological complexity. , 1979, The American journal of physiology.
[78] J. Ninio,et al. The accuracy of DNA replication. , 1979, Biochimie.
[79] Andrzej K Konopka,et al. Sequence Complexity and Composition , 2005 .
[80] S. Leibler,et al. Physical Properties Determining Self-Organization of Motors and Microtubules , 2001, Science.
[81] H P Yockey. Can the central dogma by derived from information theory? , 1978, Journal of theoretical biology.
[82] Howard Hunt Pattee,et al. The complementarity principle in biological and social structures , 1978 .
[83] Seth Lloyd,et al. Information measures, effective complexity, and total information , 1996, Complex..
[84] J. Wong. A co-evolution theory of the genetic code. , 1975, Proceedings of the National Academy of Sciences of the United States of America.
[85] Ilya Prigogine,et al. Order out of chaos , 1984 .
[86] H. Pattee. DYNAMIC AND LINGUISTIC MODES OF COMPLEX SYSTEMS , 1977 .
[87] S. Atamas. Self-organization in computer simulated selective systems. , 1996, Bio Systems.
[88] Graham Cairns-Smith. Seven clues to the origin of life , 1985 .
[89] C. Adami,et al. Introduction To Artificial Life , 1997, IEEE Trans. Evol. Comput..
[90] G. Vijver. Selected Self-Organization And the Semiotics of Evolutionary Systems , 1998 .
[91] Peter Schuster,et al. A principle of natural self-organization , 1977, Naturwissenschaften.
[92] Jeremy W. Dale,et al. Molecular Genetics of Bacteria , 1989 .
[93] L. Gold,et al. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. , 1990, Science.
[94] Luis M. Rocha,et al. Evolution with material symbol systems. , 2001, Bio Systems.
[95] J. Dworkin,et al. Alternative bases in the RNA world: The prebiotic synthesis of urazole and its ribosides , 2004, Journal of Molecular Evolution.
[96] C. H. WADDINGTON,et al. Towards a Theoretical Biology , 1968, Nature.
[97] D. Lancet,et al. Compositional genomes: prebiotic information transfer in mutually catalytic noncovalent assemblies. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[98] Claude E. Shannon,et al. Prediction and Entropy of Printed English , 1951 .
[99] C. E. SHANNON,et al. A mathematical theory of communication , 1948, MOCO.
[100] E. Mayr. This Is Biology: The Science of the Living World , 1997 .
[101] Ming Li,et al. An Introduction to Kolmogorov Complexity and Its Applications , 2019, Texts in Computer Science.
[102] John L. Casti,et al. Complexity, Language, and Life: Mathematical Approaches , 1986 .
[103] J. Ferris. Catalysis and prebiotic RNA synthesis , 1993, Origins of life and evolution of the biosphere.
[104] Andrzej K. Konopka,et al. Sequences and Codes: Fundamentals of Biomolecular Cryptology , 1994 .
[105] M. Kimura,et al. The role of robustness and changeability on the origin and evolution of genetic codes. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[106] Howard Hunt Pattee,et al. Physical Problems of the Origin of Natural Controls , 1973 .
[107] Howard H. Pattee,et al. Artificial Life Needs a Real Epistemology , 1995, ECAL.
[108] Stuart A. Kauffman,et al. The origins of order , 1993 .
[109] J. Ninio,et al. Illusory defects and mismatches: why must DNA repair always be (slightly) error prone? , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.
[110] L. Orgel. The Origins of Life: Molecules and Natural Selection , 1973 .
[111] M. Eigen,et al. Emergence of the Hypercycle , 1979 .
[112] I. Prigogine,et al. Formative Processes. (Book Reviews: Self-Organization in Nonequilibrium Systems. From Dissipative Structures to Order through Fluctuations) , 1977 .
[113] H. P. Yockey,et al. An application of information theory to the Central Dogma and the Sequence Hypothesis. , 1974, Journal of theoretical biology.
[114] M Conrad,et al. Origin of life and the underlying physics of the universe. , 1997, Bio Systems.
[115] T. D. Schneider,et al. Theory of molecular machines. II. Energy dissipation from molecular machines. , 1991, Journal of theoretical biology.
[116] R M Füchslin,et al. Evolutionary self-organization of cell-free genetic coding , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[117] A. Oparin. [The origin of life]. , 1938, Nordisk medicin.
[118] G. Maugin. THERMOSTATICS AND THERMODYNAMICS , 1999 .
[119] G. J. Chaitin,et al. TO A MATHEMATICAL DEFINITION OF “ LIFE ” , 1970 .
[120] F. Dyson. Origins of Life: Open Questions , 1985 .
[121] P. Oefner. Sequence variation and the biological function of genes: methodological and biological considerations. , 2002, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.
[122] Keith Devlin,et al. Logic and information , 1991 .
[123] J. Ninio,et al. Kinetic devices in protein synthesis, DNA replication, and mismatch repair. , 1987, Cold Spring Harbor Symposia on Quantitative Biology.
[124] Stanley L. Miller,et al. The Origin and Early Evolution of Life: Prebiotic Chemistry, the Pre-RNA World, and Time , 1996, Cell.
[125] G. Luo,et al. Simultaneous formation of peptides and nucleotides from n-phosphothreonine , 1996, Origins of life and evolution of the biosphere.
[126] L. Orgel,et al. Nonenzymatic template-directed reactions on altritol oligomers, preorganized analogues of oligonucleotides. , 2000, Chemistry.
[127] Gregory J. Chaitin,et al. Information, Randomness and Incompleteness , 1987 .
[128] A. Lazcano,et al. The roads to and from the RNA world. , 2003, Journal of theoretical biology.
[129] David Bradley. Informatics. The genome chose its alphabet with care. , 2002, Science.
[130] R Shapiro. A Replicator Was Not Involved in the Origin of Life , 2000, IUBMB life.
[131] Sang Joon Kim,et al. A Mathematical Theory of Communication , 2006 .
[132] Luis Mateus Rocha,et al. Material Representations: From the Genetic Code to the Evolution of Cellular Automata , 2005, Artificial Life.
[133] L. Orgel,et al. Synthesis of long prebiotic oligomers on mineral surfaces , 1996, Nature.
[134] J. Trevors,et al. Chance and necessity do not explain the origin of life , 2004, Cell biology international.
[135] T. D. Schneider,et al. Theory of molecular machines. I. Channel capacity of molecular machines. , 1991, Journal of theoretical biology.
[136] Andrzej K. Konopka,et al. Grand Metaphors of Biology in the Genome Era , 2002, Comput. Chem..
[137] C. Adami. What is complexity? , 2002, BioEssays : news and reviews in molecular, cellular and developmental biology.
[138] T. Cech,et al. Ribozyme-mediated repair of defective mRNA by targeted trans-splicing , 1994, Nature.
[139] Antony M. Jose,et al. The Triple Helix: Gene, Organism, and Environment , 2001, The Yale Journal of Biology and Medicine.
[140] H H Pattee,et al. The complementarity principle and the origin of macromolecular information. , 1979, Bio Systems.
[141] B. Rode,et al. Peptides and the origin of life. , 1999, Peptides.
[142] T D Schneider,et al. Measuring molecular information. , 1999, Journal of theoretical biology.
[143] S. Kauffman. At Home in the Universe: The Search for the Laws of Self-Organization and Complexity , 1995 .
[144] Marcus Hutter,et al. Algorithmic Information Theory , 1977, IBM J. Res. Dev..
[145] D. Deamer,et al. Eutectic phase polymerization of activated ribonucleotide mixtures yields quasi-equimolar incorporation of purine and pyrimidine nucleobases. , 2003, Journal of the American Chemical Society.
[146] P. Moser. Knowledge and the Flow of Information , 1986 .
[147] Rolf Herken,et al. The Universal Turing Machine: A Half-Century Survey , 1992 .
[148] Gerald F. Joyce,et al. Selection in vitro of an RNA enzyme that specifically cleaves single-stranded DNA , 1990, Nature.
[149] Robert Rosen,et al. Essays on Life Itself , 1999 .
[150] C. Adami,et al. Physical complexity of symbolic sequences , 1996, adap-org/9605002.
[151] J. Szostak,et al. In vitro selection of RNA molecules that bind specific ligands , 1990, Nature.
[152] B. Rode,et al. Peptides and the origin of life1 , 1999, Peptides.
[153] Gregory J. Chaitin,et al. On the Length of Programs for Computing Finite Binary Sequences , 1966, JACM.
[154] Yufen Zhao,et al. Phosphoryl amino acids: Common origin for nucleic acids and protein , 1995 .
[155] Rónán O'Beirne,et al. The Blackwell Guide to the Philosophy of Computing and Information , 2004 .
[156] Donald C. Mikulecky,et al. The Emergence of Complexity: Science Coming of Age Or Science Growing Old? , 2001, Comput. Chem..
[157] E. Schrödinger. What Is Life , 1946 .
[158] Donald M. MacKay,et al. Information, mechanism and meaning , 1969 .
[159] M. Vaneechoutte,et al. The Scientific Origin of Life: Considerations on the Evolution of Information, Leading to an Alternative Proposal for Explaining the Origin of the Cell, a Semantically Closed System , 2000, Annals of the New York Academy of Sciences.
[160] W. Martin,et al. On the origins of cells: a hypothesis for the evolutionary transitions from abiotic geochemistry to chemoautotrophic prokaryotes, and from prokaryotes to nucleated cells. , 2003, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[161] Gerald F. Joyce,et al. 1 Prospects for Understanding the Origin of the RNA World , 1993 .
[162] W. Gilbert. Origin of life: The RNA world , 1986, Nature.
[163] L. Floridi. OPEN PROBLEMS IN THE PHILOSOPHY OF INFORMATION , 2004 .
[164] E. Schrödinger,et al. What is life? : the physical aspect of the living cell , 1946 .
[165] J Hoffmeyer,et al. Code‐Duality and the Epistemic Cut , 2000, Annals of the New York Academy of Sciences.
[166] Jaakko Hintikka,et al. On Semantic Information , 1970 .
[167] Y. Pilpel,et al. Graded Autocatalysis Replication Domain (GARD): Kinetic Analysis of Self-Replication in Mutually Catalytic Sets , 1998, Origins of life and evolution of the biosphere.