Network plasticity of pluripotency transcription factors in embryonic stem cells
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Fabian J. Theis | Jan Hasenauer | Carsten Marr | Fabian J Theis | Oliver Hilsenbeck | Michael Schwarzfischer | Dirk Loeffler | Simon Hastreiter | Justin Feigelman | Philipp S. Hoppe | Stavroula Skylaki | Adam Filipczyk | Max Endele | Timm Schroeder | Bernhard Schauberger | J. Hasenauer | C. Marr | Stavroula Skylaki | Oliver Hilsenbeck | T. Schroeder | K. Anastassiadis | B. Schauberger | Michael Schwarzfischer | M. Endele | D. Loeffler | Konstantinos D. Kokkaliaris | Konstantinos Anastassiadis | Justin Feigelman | A. Filipczyk | S. Hastreiter | Bernhard Schauberger
[1] T. Blauwkamp,et al. Embryonic stem cells require Wnt proteins to prevent differentiation to epiblast stem cells , 2011, Nature Cell Biology.
[2] H. Ng,et al. The transcriptional regulation of pluripotency , 2012, Cell Research.
[3] Takashi Hiiragi,et al. Stochastic patterning in the mouse pre-implantation embryo , 2007, Development.
[4] Julian Gingold,et al. Zfp281 mediates Nanog autorepression through recruitment of the NuRD complex and inhibits somatic cell reprogramming , 2012, Proceedings of the National Academy of Sciences.
[5] A. Sharov,et al. Totipotent Embryonic Stem Cells Arise in Ground-State Culture Conditions , 2013, Cell reports.
[6] Nicola Festuccia,et al. OCT4/SOX2‐independent Nanog autorepression modulates heterogeneous Nanog gene expression in mouse ES cells , 2012, The EMBO journal.
[7] Fabian J Theis,et al. Hierarchical Differentiation of Myeloid Progenitors Is Encoded in the Transcription Factor Network , 2011, PloS one.
[8] R. Jaenisch,et al. Single-cell analysis reveals that expression of nanog is biallelic and equally variable as that of other pluripotency factors in mouse ESCs. , 2013, Cell stem cell.
[9] B. Doble,et al. The ground state of embryonic stem cell self-renewal , 2008, Nature.
[10] J. García-Ojalvo,et al. Towards a statistical mechanics of cell fate decisions. , 2012, Current opinion in genetics & development.
[11] X. Chen,et al. The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells , 2006, Nature Genetics.
[12] Richard A Young,et al. Control of the Embryonic Stem Cell State , 2011, Cell.
[13] Ingo Roeder,et al. A Model-Based Analysis of Culture-Dependent Phenotypes of mESCs , 2014, PloS one.
[14] Aviv Regev,et al. Deconstructing transcriptional heterogeneity in pluripotent stem cells , 2014, Nature.
[15] Sheng Zhong,et al. A core Klf circuitry regulates self-renewal of embryonic stem cells , 2008, Nature Cell Biology.
[16] S. Emmott,et al. Defining an essential transcription factor program for naïve pluripotency , 2014, Science.
[17] I. Burtscher,et al. Foxa2 regulates polarity and epithelialization in the endoderm germ layer of the mouse embryo , 2009, Development.
[18] Philipp S. Hoppe,et al. Single-cell technologies sharpen up mammalian stem cell research , 2014, Nature Cell Biology.
[19] F. Markowetz,et al. Systems-level dynamic analyses of fate change in murine embryonic stem cells , 2009, Nature.
[20] Xin Li,et al. Identification of Thioaptamer Ligand against E-Selectin: Potential Application for Inflamed Vasculature Targeting , 2010, PloS one.
[21] J. Nichols,et al. Nanog safeguards pluripotency and mediates germline development , 2007, Nature.
[22] Heiko Lickert,et al. Biallelic expression of nanog protein in mouse embryonic stem cells. , 2013, Cell stem cell.
[23] Yang Yang,et al. Kruppel-like Factor 4 (Klf4) Prevents Embryonic Stem (ES) Cell Differentiation by Regulating Nanog Gene Expression* , 2010, The Journal of Biological Chemistry.
[24] Shin-Ichi Nishikawa,et al. Continuous single-cell imaging of blood generation from haemogenic endothelium , 2009, Nature.
[25] M. Murakami,et al. The Homeoprotein Nanog Is Required for Maintenance of Pluripotency in Mouse Epiblast and ES Cells , 2003, Cell.
[26] Ingo Roeder,et al. Nanog Variability and Pluripotency Regulation of Embryonic Stem Cells - Insights from a Mathematical Model Analysis , 2010, PloS one.
[27] Ping Li,et al. Embryonic stem cell self‐renewal pathways converge on the transcription factor Tfcp2l1 , 2013, The EMBO journal.
[28] A. Stewart,et al. Recombineering, transfection, Western, IP and ChIP methods for protein tagging via gene targeting or BAC transgenesis. , 2011, Methods.
[29] N. D. Clarke,et al. Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells , 2008, Cell.
[30] Michael B. Elowitz,et al. Dynamic Heterogeneity and DNA Methylation in Embryonic Stem Cells , 2014, Molecular cell.
[31] Max Endele,et al. Quantitative single-cell approaches to stem cell research. , 2014, Cell stem cell.
[32] Tetsushi Sakuma,et al. Stochastic promoter activation affects Nanog expression variability in mouse embryonic stem cells , 2014, Scientific Reports.
[33] Petr Svoboda,et al. Stochastic NANOG fluctuations allow mouse embryonic stem cells to explore pluripotency , 2014, Development.
[34] C. Peterson,et al. Stem cell states, fates, and the rules of attraction. , 2009, Cell stem cell.
[35] Ge Guo,et al. Nanog Is the Gateway to the Pluripotent Ground State , 2009, Cell.
[36] Timm Schroeder,et al. Long-term single-cell imaging of mammalian stem cells , 2011, Nature Methods.
[37] Richard J. Beckman,et al. A Comparison of Three Methods for Selecting Values of Input Variables in the Analysis of Output From a Computer Code , 2000, Technometrics.
[38] Timm Schroeder,et al. Imaging stem-cell-driven regeneration in mammals , 2008, Nature.
[39] Jens Timmer,et al. An error model for protein quantification , 2007, Bioinform..
[40] Jonathan M. Monk,et al. Wdr5 Mediates Self-Renewal and Reprogramming via the Embryonic Stem Cell Core Transcriptional Network , 2011, Cell.
[41] A. Smith,et al. Self-renewal of pluripotent embryonic stem cells is mediated via activation of STAT3. , 1998, Genes & development.
[42] Anagha Joshi,et al. Esrrb Is a Pivotal Target of the Gsk3/Tcf3 Axis Regulating Embryonic Stem Cell Self-Renewal , 2012, Cell stem cell.
[43] J. Nichols,et al. Functional Expression Cloning of Nanog, a Pluripotency Sustaining Factor in Embryonic Stem Cells , 2003, Cell.
[44] S. Orkin,et al. An Extended Transcriptional Network for Pluripotency of Embryonic Stem Cells , 2008, Cell.
[45] Frank Buchholz,et al. A new logic for DNA engineering using recombination in Escherichia coli , 1998, Nature Genetics.
[46] Fabian J. Theis,et al. Efficient fluorescence image normalization for time lapse movies , 2011 .
[47] R. Young,et al. Stem Cells, the Molecular Circuitry of Pluripotency and Nuclear Reprogramming , 2008, Cell.
[48] J. Miyazaki,et al. Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells , 2000, Nature Genetics.
[49] J. Nichols,et al. BMP Induction of Id Proteins Suppresses Differentiation and Sustains Embryonic Stem Cell Self-Renewal in Collaboration with STAT3 , 2003, Cell.
[50] Hannah H. Chang,et al. Non-genetic heterogeneity — a mutation-independent driving force for the somatic evolution of tumours , 2009, Nature Reviews Genetics.
[51] Avi Ma’ayan,et al. Systems biology of stem cell fate and cellular reprogramming , 2009, Nature Reviews Molecular Cell Biology.
[52] Georg Fuellen,et al. The PluriNetWork: An Electronic Representation of the Network Underlying Pluripotency in Mouse, and Its Applications , 2010, PloS one.
[53] J. García-Ojalvo,et al. Correlations Between the Levels of Oct4 and Nanog as a Signature for Naïve Pluripotency in Mouse Embryonic Stem Cells , 2012, Stem cells.
[54] Max A. Viergever,et al. Adaptive Stochastic Gradient Descent Optimisation for Image Registration , 2009, International Journal of Computer Vision.
[55] Paul Bertone,et al. Identification of the missing pluripotency mediator downstream of leukaemia inhibitory factor , 2013, The EMBO journal.
[56] Nicola Festuccia,et al. Esrrb Is a Direct Nanog Target Gene that Can Substitute for Nanog Function in Pluripotent Cells , 2012, Cell stem cell.
[57] Avi Ma'ayan,et al. Construction and Validation of a Regulatory Network for Pluripotency and Self-Renewal of Mouse Embryonic Stem Cells , 2014, PLoS Comput. Biol..
[58] Debbie L C van den Berg,et al. An Oct4-Centered Protein Interaction Network in Embryonic Stem Cells , 2010, Cell stem cell.
[59] Ian Chambers,et al. The transcriptional foundation of pluripotency , 2009, Development.
[60] J. Nichols,et al. Oct4 and LIF/Stat3 additively induce Krüppel factors to sustain embryonic stem cell self-renewal. , 2009, Cell stem cell.
[61] M. Babu,et al. Dissecting ensemble networks in ES cell populations reveals micro-heterogeneity underlying pluripotency. , 2012, Molecular bioSystems.
[62] H. Ng,et al. Reduced Oct4 Expression Directs a Robust Pluripotent State with Distinct Signaling Activity and Increased Enhancer Occupancy by Oct4 and Nanog , 2013, Cell stem cell.
[63] H. Ng,et al. KLF4 and PBX1 Directly Regulate NANOG Expression in Human Embryonic Stem Cells , 2009, Stem cells.
[64] Fabian J. Theis,et al. MCA: Multiresolution Correlation Analysis, a graphical tool for subpopulation identification in single-cell gene expression data , 2014, BMC Bioinformatics.
[65] Mihail Sarov,et al. Recombineering BAC transgenes for protein tagging. , 2011, Methods.
[66] Patrick S. Stumpf,et al. Nanog-dependent feedback loops regulate murine embryonic stem cell heterogeneity , 2012, Nature Cell Biology.
[67] Hitoshi Niwa,et al. A parallel circuit of LIF signalling pathways maintains pluripotency of mouse ES cells , 2009, Nature.
[68] C. Lim,et al. Regulated Fluctuations in Nanog Expression Mediate Cell Fate Decisions in Embryonic Stem Cells , 2009, PLoS biology.
[69] Matt Thomson,et al. Pluripotency Factors in Embryonic Stem Cells Regulate Differentiation into Germ Layers , 2011, Cell.
[70] Philipp S. Hoppe,et al. Hematopoietic Cytokines Can Instruct Lineage Choice , 2009, Science.
[71] Dmitri Papatsenko,et al. Tex10 Coordinates Epigenetic Control of Super-Enhancer Activity in Pluripotency and Reprogramming. , 2015, Cell stem cell.