Annotation and Image Markup: Accessing and Interoperating with the Semantic Content in Medical Imaging

The annotation and image markup project makes large distributed collections of medical images in cyberspace and hospital information systems accessible using an information model of image content and ontologies. Interest in applying semantic Web technologies to the life sciences continues to accelerate. Biomedical research is increasingly an online activity as scientists combine and explore different types of data in cyberspace, putting together complementary views on problems that lead to new insights and discoveries. An e-Science paradigm is thus emerging; the biomedical community is looking for tools to help access, query, and analyze a myriad of data in cyberspace. Specifically, the biomedical community is beginning to embrace technologies such as ontologies to integrate scientific knowledge, standard syntaxes, and semantics to make biomedical knowledge explicit, and the semantic Web to establish virtual collaborations.

[1]  Daniel L. Rubin,et al.  Creating and Curating a Terminology for Radiology: Ontology Modeling and Analysis , 2008, Journal of Digital Imaging.

[2]  Kei-Hoi Cheung,et al.  Advancing translational research with the Semantic Web , 2007, BMC Bioinformatics.

[3]  Pauline Rafferty,et al.  Flickr and Democratic Indexing: dialogic approaches to indexing , 2007, Aslib Proc..

[4]  Daniel L. Rubin,et al.  Use of Description Logic Classification to Reason about Consequences of Penetrating Injuries , 2005, AMIA.

[5]  Martin J. O'Connor,et al.  An Ontology-based Architecture for Integration of Clinical Trials Management Applications , 2007, AMIA.

[6]  Mohd Sapiyan Baba,et al.  Automatic Multilevel Medical Image Annotation and Retrieval , 2008, Journal of Digital Imaging.

[7]  Rolf Apweiler,et al.  The Gene Ontology Annotation (GOA) Project—Application of GO in SWISS-PROT, TrEMBL and InterPro , 2003, Comparative and functional genomics.

[8]  Deborah L. McGuinness,et al.  Semantic Scientific Knowledge Integration , 2008, AAAI Spring Symposium: Semantic Scientific Knowledge Integration.

[9]  C. Langlotz RadLex: a new method for indexing online educational materials. , 2006, Radiographics : a review publication of the Radiological Society of North America, Inc.

[10]  Olivier Bodenreider,et al.  Bio-ontologies: current trends and future directions , 2006, Briefings Bioinform..

[11]  Daniel L. Rubin,et al.  Medical Imaging on the Semantic Web: Annotation and Image Markup , 2008, AAAI Spring Symposium: Semantic Scientific Knowledge Integration.