Molecular Mechanics Study of Nickel(II) Octaethylporphyrin Adsorbed on Graphite(0001)

The effects of adsorption on the graphite(0001) surface on the nonplanar distortions of nickel(II)octaethylporphyrin were studied by molecular mechanics (MM) approach. Using the Consistent Force Field (CFF) program with previously developed parameters for metalloporphyrins and supplemented to treat intermolecular interactions geometry optimizations were carried out for 43 conformations of 28 distinct conformers of nickel(II)octaethylporphyrin. The stable energy-minimized conformers were stereochemically characterized, analyzed by the Normal-coordinate Structural Decomposition (NSD) method and compared with the available theoretical and experimental data for the isolated nickel(II)octaethylporphyrin structures.

[1]  K. W. Hipps,et al.  A scanning tunneling microscopy study of self-assembled nickel(II) octaethylporphyrin deposited from solutions on HOPG. , 2006, Langmuir : the ACS journal of surfaces and colloids.

[2]  Schweizer Wb,et al.  Quantum Mechanical Calculations for Benzene Dimer Energies: Present Problems and Future Challenges. , 2006 .

[3]  J. Dunitz,et al.  Quantum Mechanical Calculations for Benzene Dimer Energies:  Present Problems and Future Challenges. , 2006, Journal of chemical theory and computation.

[4]  F. Bechstedt,et al.  Attracted by long-range electron correlation: adenine on graphite. , 2005, Physical review letters.

[5]  C. Medforth,et al.  Nonplanar heme deformations and excited state displacements in nickel porphyrins detected by Raman spectroscopy at soret excitation. , 2005, The journal of physical chemistry. A.

[6]  B. Wang,et al.  Observation of co-existence of `face-on' and `edge-on' stacking styles in a porphyrin monolayer , 2005 .

[7]  Xiongce Zhao,et al.  An Effective Potential for Adsorption of Polar Molecules on Graphite , 2005 .

[8]  M. Gruden-Pavlović,et al.  Conformational analysis of octa- and tetrabromo tetraphenylporphyrins and their Ni(II) and Tb(III) complexes. , 2004, Journal of inorganic biochemistry.

[9]  T. Ishida,et al.  STM observation of alkyl-chain-assisted self-assembled monolayers of pyridine-coordinated porphyrin rhodium chlorides. , 2004, Langmuir : the ACS journal of surfaces and colloids.

[10]  I. Stensgaard,et al.  Properties of large organic molecules on metal surfaces , 2003 .

[11]  N. Bampos,et al.  Supramolecular Monolayers of Zinc Porphyrin Trimers on Graphite , 2003 .

[12]  Bo Xu,et al.  Studies of CuPc Adsorption on Graphite Surface and Alkane Adlayer , 2002 .

[13]  P. Kozlowski,et al.  Density Functional Theory Analysis of Nickel Octaethylporphyrin Ruffling , 2002 .

[14]  Roger Guilard,et al.  The porphyrin handbook , 2002 .

[15]  H. W. Liu,et al.  Surface Stabilized Porphyrin and Phthalocyanine Two-Dimensional Network Connected by Hydrogen Bonds , 2001 .

[16]  A. Coutsolelos,et al.  Conformational analysis of octa- and tetrahalogenated tetraphenylporphyrins and their metal derivatives , 2001 .

[17]  C Joachim,et al.  Conformational changes of single molecules induced by scanning tunneling microscopy manipulation: a route to molecular switching. , 2001, Physical review letters.

[18]  Jeremy G. Vinter,et al.  Complementary polytopic interactions (CPI) as revealed by molecular modelling using the XED force field , 2001 .

[19]  Allen G. Oliver,et al.  SELECTIVE SUPRAMOLECULAR PORPHYRIN/FULLERENE INTERACTIONS , 1999 .

[20]  K. Maitra,et al.  Interaction of Curved and Flat Molecular Surfaces. The Structures of Crystalline Compounds Composed of Fullerene (C60, C60O, C70, and C120O) and Metal Octaethylporphyrin Units , 1999 .

[21]  S. Sowerby,et al.  Molecular mechanics study of hydrogen bonded self-assembled adenine monolayers on graphite , 1998 .

[22]  Kevin M. Smith,et al.  Substituent-Induced Perturbation Symmetries and Distortions of meso-tert-Butylporphyrins. , 1998, Inorganic chemistry.

[23]  Kevin M Smith,et al.  Metal Dependence of the Contributions of Low-Frequency Normal Coordinates to the Sterically Induced Distortions of Meso-Dialkyl-Substituted Porphyrins , 1998 .

[24]  W. Jentzen,et al.  Nonplanar porphyrins and their significance in proteins , 1998 .

[25]  W. Jentzen,et al.  Structural characterization of synthetic and protein-bound porphyrins in terms of the lowest-frequency normal coordinates of the macrocycle , 1997 .

[26]  F. Habraken,et al.  Photovoltaic effects in porphyrin polymer films and heterojunctions. , 1996 .

[27]  K. Seki,et al.  Formation of Schottky barriers at interfaces between metals and molecular semiconductors of p‐ and n‐type conductances , 1996 .

[28]  N. Hush,et al.  Molecular electronic properties of fused rigid porphyrin-oligomer molecular wires , 1996 .

[29]  W. Goddard,et al.  Ruffling in a Series of Nickel(II) meso-Tetrasubstituted Porphyrins as a Model for the Conserved Ruffling of the Heme of Cytochromes c. , 1995, Journal of the American Chemical Society.

[30]  A. Bard,et al.  High-Density Nanosecond Charge Trapping in Thin Films of the Photoconductor ZnODEP , 1993, Science.

[31]  A. D. Buckingham,et al.  Experimental determination of the atomic quadrupole moment of graphite , 1993 .

[32]  Hansen,et al.  Electrostatic forces and the frequency spectrum of a monolayer solid of linear molecules on graphite. , 1992, Physical review. B, Condensed matter.

[33]  W. Steele,et al.  The electrostatic field at a graphite surface and its effect on molecule-solid interactions , 1992 .

[34]  R. Cracknell,et al.  Evaluation of a Model Potential Function for Ar Graphite Interaction using Computer Simulation , 1990 .

[35]  J. Shelnutt,et al.  New crystalline phase of (octaethylporphinato)nickel(II): effects of .pi.-.pi. interactions on molecular structure and resonance Raman spectra , 1988 .

[36]  Kjeld Rasmussen,et al.  The Consistent Force Field: A Documentation , 1977 .

[37]  Kjeld Rasmussen,et al.  The Consistent Force Field , 1977 .

[38]  E. Meyer,et al.  Crystal and molecular structure of the triclinic form of 1,2,3,4,5,6,7,7-octaethylporphinatonickel(II). Comparison with the tetragonal form , 1974 .

[39]  E. F. Meyer The crystal and molecular structure of nickel(II)octaethylporphyrin , 1972 .

[40]  Gordon S. G. Beveridge,et al.  Optimization: theory and practice , 1970 .

[41]  C. F. Curtiss,et al.  Molecular Theory Of Gases And Liquids , 1954 .