Sparse Multi-Response Tensor Regression for Alzheimer's Disease Study With Multivariate Clinical Assessments

Alzheimer's disease (AD) is a progressive and irreversible neurodegenerative disorder that has recently seen serious increase in the number of affected subjects. In the last decade, neuroimaging has been shown to be a useful tool to understand AD and its prodromal stage, amnestic mild cognitive impairment (MCI). The majority of AD/MCI studies have focused on disease diagnosis, by formulating the problem as classification with a binary outcome of AD/MCI or healthy controls. There have recently emerged studies that associate image scans with continuous clinical scores that are expected to contain richer information than a binary outcome. However, very few studies aim at modeling multiple clinical scores simultaneously, even though it is commonly conceived that multivariate outcomes provide correlated and complementary information about the disease pathology. In this article, we propose a sparse multi-response tensor regression method to model multiple outcomes jointly as well as to model multiple voxels of an image jointly. The proposed method is particularly useful to both infer clinical scores and thus disease diagnosis, and to identify brain subregions that are highly relevant to the disease outcomes. We conducted experiments on the Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset, and showed that the proposed method enhances the performance and clearly outperforms the competing solutions.

[1]  M. Fox,et al.  Frontiers in Systems Neuroscience Systems Neuroscience , 2022 .

[2]  Ying Wang,et al.  High-dimensional Pattern Regression Using Machine Learning: from Medical Images to Continuous Clinical Variables However, Support Vector Regression Has Some Disadvantages That Become Especially , 2022 .

[3]  I. Veer,et al.  Strongly reduced volumes of putamen and thalamus in Alzheimer's disease: an MRI study , 2008, Brain : a journal of neurology.

[4]  B. Långström,et al.  The use of PET in Alzheimer disease , 2010, Nature Reviews Neurology.

[5]  Timo Similä,et al.  Input selection and shrinkage in multiresponse linear regression , 2007, Comput. Stat. Data Anal..

[6]  J. Baron,et al.  Mapping gray matter loss with voxel-based morphometry in mild cognitive impairment , 2002, Neuroreport.

[7]  C. Davatzikos Baseline and longitudinal patterns of brain atrophy in MCI patients, and their use in prediction of short-term conversion to AD: Results from ADNI , 2009, Alzheimer's & Dementia.

[8]  Ji Zhu,et al.  Regularized Multivariate Regression for Identifying Master Predictors with Application to Integrative Genomics Study of Breast Cancer. , 2008, The annals of applied statistics.

[9]  Xiaofeng Zhu,et al.  A novel matrix-similarity based loss function for joint regression and classification in AD diagnosis , 2014, NeuroImage.

[10]  Stephen J. Wright,et al.  Simultaneous Variable Selection , 2005, Technometrics.

[11]  Dinggang Shen,et al.  HAMMER: hierarchical attribute matching mechanism for elastic registration , 2002, IEEE Transactions on Medical Imaging.

[12]  M. Yuan,et al.  Model selection and estimation in regression with grouped variables , 2006 .

[13]  R. Tibshirani,et al.  PATHWISE COORDINATE OPTIMIZATION , 2007, 0708.1485.

[14]  Nick C. Fox,et al.  Global and local gray matter loss in mild cognitive impairment and Alzheimer's disease , 2004, NeuroImage.

[15]  Tamara G. Kolda,et al.  Tensor Decompositions and Applications , 2009, SIAM Rev..

[16]  Marie Chupin,et al.  Automatic classi fi cation of patients with Alzheimer ' s disease from structural MRI : A comparison of ten methods using the ADNI database , 2010 .

[17]  Dinggang Shen,et al.  Knowledge-Guided Robust MRI Brain Extraction for Diverse Large-Scale Neuroimaging Studies on Humans and Non-Human Primates , 2014, PloS one.

[18]  Daoqiang Zhang,et al.  Hierarchical fusion of features and classifier decisions for Alzheimer's disease diagnosis , 2014, Human brain mapping.

[19]  Clifford R. Jack,et al.  Predicting Clinical Scores from Magnetic Resonance Scans in Alzheimer's Disease , 2010, NeuroImage.

[20]  N. Tzourio-Mazoyer,et al.  Automated Anatomical Labeling of Activations in SPM Using a Macroscopic Anatomical Parcellation of the MNI MRI Single-Subject Brain , 2002, NeuroImage.

[21]  D. Louis Collins,et al.  Relating one-year cognitive change in mild cognitive impairment to baseline MRI features , 2009, NeuroImage.

[22]  Xuming He,et al.  Dimension reduction based on constrained canonical correlation and variable filtering , 2008, 0808.0977.

[23]  M. Yuan,et al.  Dimension reduction and coefficient estimation in multivariate linear regression , 2007 .

[24]  Hongtu Zhu,et al.  Tensor Regression with Applications in Neuroimaging Data Analysis , 2012, Journal of the American Statistical Association.

[25]  K. Marder,et al.  Olfactory deficits in patients with mild cognitive impairment predict Alzheimer's disease at follow-up. , 2000, The American journal of psychiatry.

[26]  S. Keleş,et al.  Sparse partial least squares regression for simultaneous dimension reduction and variable selection , 2010, Journal of the Royal Statistical Society. Series B, Statistical methodology.

[27]  S. Folstein,et al.  "Mini-mental state". A practical method for grading the cognitive state of patients for the clinician. , 1975, Journal of psychiatric research.

[28]  Kathryn Ziegler-Graham,et al.  Forecasting the global burden of Alzheimer’s disease , 2007, Alzheimer's & Dementia.

[29]  Alan C. Evans,et al.  A nonparametric method for automatic correction of intensity nonuniformity in MRI data , 1998, IEEE Transactions on Medical Imaging.

[30]  C. R. Rao,et al.  Generalized Inverse of Matrices and its Applications , 1972 .

[31]  I. Helland Maximum likelihood regression on relevant components , 1992 .

[32]  Daoqiang Zhang,et al.  Ensemble sparse classification of Alzheimer's disease , 2012, NeuroImage.

[33]  K. Davis,et al.  A new rating scale for Alzheimer's disease. , 1984, The American journal of psychiatry.

[34]  Dinggang Shen,et al.  Joint estimation of multiple clinical variables of neurological diseases from imaging patterns , 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[35]  E. Tangalos,et al.  Mild Cognitive Impairment Clinical Characterization and Outcome , 1999 .

[36]  Jianhua Z. Huang,et al.  Sparse Reduced-Rank Regression for Simultaneous Dimension Reduction and Variable Selection , 2012 .

[37]  Yong He,et al.  Discriminative analysis of early Alzheimer's disease using multi-modal imaging and multi-level characterization with multi-classifier (M3) , 2012, NeuroImage.

[38]  K. S. Banerjee Generalized Inverse of Matrices and Its Applications , 1973 .

[39]  A. Convit,et al.  Atrophy of the medial occipitotemporal, inferior, and middle temporal gyri in non-demented elderly predict decline to Alzheimer’s disease☆ , 2000, Neurobiology of Aging.

[40]  Christos Davatzikos,et al.  Voxel-Based Morphometry Using the RAVENS Maps: Methods and Validation Using Simulated Longitudinal Atrophy , 2001, NeuroImage.

[41]  D. Louis Collins,et al.  Predicting Clinical Variable from MRI Features: Application to MMSE in MCI , 2005, MICCAI.

[42]  A. Izenman Reduced-rank regression for the multivariate linear model , 1975 .

[43]  Jean-Claude Baron,et al.  Early diagnosis of alzheimer’s disease: contribution of structural neuroimaging , 2003, NeuroImage.

[44]  Daoqiang Zhang,et al.  Multi-modal multi-task learning for joint prediction of multiple regression and classification variables in Alzheimer's disease , 2012, NeuroImage.

[45]  I. Helland Partial least squares regression and statistical models , 1990 .