Dual feature correlation guided multi-task learning for Alzheimer's disease prediction

Alzheimer's disease (AD) is a gradually progressive neurodegenerative disease affecting cognition functions. Predicting the cognitive scores from neuroimage measures and identifying relevant imaging biomarkers are important research topics in the study of AD. Despite machine learning algorithms having many successful applications, the prediction model suffers from the so-called curse of dimensionality. Multi-task feature learning (MTFL) has helped tackle this problem incorporating the correlations among multiple clinical cognitive scores. However, MTFL neglects the inherent correlation among brain imaging measures. In order to better predict the cognitive scores and identify stable biomarkers, we first propose a generalized multi-task formulation framework that incorporates the task and feature correlation structures simultaneously. Second, we present a novel feature-aware sparsity-inducing norm (FAS-norm) penalty to incorporate a useful correlation between brain regions by exploiting correlations among features. Three multi-task learning models that incorporate the FAS-norm penalty are proposed following our framework. Finally, the algorithm based on the alternating direction method of multipliers (ADMM) is developed to optimize the non-smooth problems. We comprehensively evaluate the proposed models on the cross-sectional and longitudinal Alzheimer's disease neuroimaging initiative datasets. The inputs are the thickness measures and the volume measures of the cortical regions of interest. Compared with MTFL, our methods achieve an average decrease of 4.28% in overall error in the cross-sectional analysis and an average decrease of 7.97% in the Alzheimer's Disease Assessment Scale cognitive total score longitudinal analysis. Moreover, our methods identify sensitive and stable biomarkers to physicians, such as the hippocampus, lateral ventricle, and corpus callosum.

[1]  Anders M. Dale,et al.  Automated manifold surgery: constructing geometrically accurate and topologically correct models of the human cerebral cortex , 2001, IEEE Transactions on Medical Imaging.

[2]  S. Arnold,et al.  Quality, and not Just Quantity, of Education Accounts for Differences in Psychometric Performance between African Americans and White Non-Hispanics with Alzheimer's Disease , 2012, Journal of the International Neuropsychological Society.

[3]  Alan C. Evans,et al.  A nonparametric method for automatic correction of intensity nonuniformity in MRI data , 1998, IEEE Transactions on Medical Imaging.

[4]  G. Kavitha,et al.  Analysis of ventricle regions in Alzheimer’s brain MR images using level set based methods , 2013 .

[5]  Ying Wang,et al.  High-dimensional Pattern Regression Using Machine Learning: from Medical Images to Continuous Clinical Variables However, Support Vector Regression Has Some Disadvantages That Become Especially , 2022 .

[6]  B. Schmand,et al.  Value of Neuropsychological Tests, Neuroimaging, and Biomarkers for Diagnosing Alzheimer's Disease in Younger and Older Age Cohorts , 2011, Journal of the American Geriatrics Society.

[7]  Clifford R. Jack,et al.  Predicting Clinical Scores from Magnetic Resonance Scans in Alzheimer's Disease , 2010, NeuroImage.

[8]  H. Braak,et al.  On areas of transition between entorhinal allocortex and temporal isocortex in the human brain. Normal morphology and lamina-specific pathology in Alzheimer's disease , 2004, Acta Neuropathologica.

[9]  Shannon L. Risacher,et al.  High-Order Multi-Task Feature Learning to Identify Longitudinal Phenotypic Markers for Alzheimer's Disease Progression Prediction , 2012, NIPS.

[10]  Juan M. Górriz,et al.  Automatic ROI Selection in Structural Brain MRI Using SOM 3D Projection , 2014, PloS one.

[11]  Fei Wang,et al.  FeaFiner: biomarker identification from medical data through feature generalization and selection , 2013, KDD.

[12]  Juan Manuel Górriz,et al.  Computer aided diagnosis of Alzheimer's disease using component based SVM , 2011, Appl. Soft Comput..

[13]  Jiayu Zhou,et al.  Integrating low-rank and group-sparse structures for robust multi-task learning , 2011, KDD.

[14]  B. Miller,et al.  Heightened emotional contagion in mild cognitive impairment and Alzheimer’s disease is associated with temporal lobe degeneration , 2013, Proceedings of the National Academy of Sciences.

[15]  Jianzhong Wang,et al.  Fused Group Lasso Regularized Multi-Task Feature Learning and Its Application to the Cognitive Performance Prediction of Alzheimer’s Disease , 2018, Neuroinformatics.

[16]  A. Dale,et al.  Improved Localizadon of Cortical Activity by Combining EEG and MEG with MRI Cortical Surface Reconstruction: A Linear Approach , 1993, Journal of Cognitive Neuroscience.

[17]  Jieping Ye,et al.  Sparse learning and stability selection for predicting MCI to AD conversion using baseline ADNI data , 2012, BMC Neurology.

[18]  Daoqiang Zhang,et al.  Temporally-Constrained Group Sparse Learning for Longitudinal Data Analysis , 2012, MICCAI.

[19]  Jieping Ye,et al.  Multi-Task Feature Learning Via Efficient l2, 1-Norm Minimization , 2009, UAI.

[20]  Anders M. Dale,et al.  Sequence-independent segmentation of magnetic resonance images , 2004, NeuroImage.

[21]  Tolga Ertekin,et al.  Total intracranial and lateral ventricle volumes measurement in Alzheimer’s disease: A methodological study , 2016, Journal of Clinical Neuroscience.

[22]  B. Sahakian,et al.  Differing patterns of temporal atrophy in Alzheimer’s disease and semantic dementia , 2001, Neurology.

[23]  Dinggang Shen,et al.  Subspace Regularized Sparse Multitask Learning for Multiclass Neurodegenerative Disease Identification , 2016, IEEE Transactions on Biomedical Engineering.

[24]  Shannon L. Risacher,et al.  Sparse Bayesian multi-task learning for predicting cognitive outcomes from neuroimaging measures in Alzheimer's disease , 2012, 2012 IEEE Conference on Computer Vision and Pattern Recognition.

[25]  J Zhang,et al.  The cost of Alzheimer's disease in China and re-estimation of costs worldwide , 2018, Alzheimer's & Dementia.

[26]  Anders M. Dale,et al.  Cortical Surface-Based Analysis I. Segmentation and Surface Reconstruction , 1999, NeuroImage.

[27]  S. Folstein,et al.  "Mini-mental state". A practical method for grading the cognitive state of patients for the clinician. , 1975, Journal of psychiatric research.

[28]  Hua Wang,et al.  Joint Multi-Modal Longitudinal Regression and Classification for Alzheimer’s Disease Prediction , 2019, IEEE Transactions on Medical Imaging.

[29]  Daoqiang Zhang,et al.  Temporally Constrained Group Sparse Learning for Longitudinal Data Analysis in Alzheimer's Disease , 2017, IEEE Transactions on Biomedical Engineering.

[30]  Daoqiang Zhang,et al.  Multi‐task exclusive relationship learning for alzheimer’s disease progression prediction with longitudinal data , 2019, Medical Image Anal..

[31]  Jieping Ye,et al.  Robust multi-task feature learning , 2012, KDD.

[32]  Marc Teboulle,et al.  A Fast Iterative Shrinkage-Thresholding Algorithm for Linear Inverse Problems , 2009, SIAM J. Imaging Sci..

[33]  Anders M. Dale,et al.  An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest , 2006, NeuroImage.

[34]  Daoqiang Zhang,et al.  Multi-modal multi-task learning for joint prediction of multiple regression and classification variables in Alzheimer's disease , 2012, NeuroImage.

[35]  Xiaohui Chen,et al.  A Two-Graph Guided Multi-task Lasso Approach for eQTL Mapping , 2012, AISTATS.

[36]  Paul M. Thompson,et al.  Morphometric analysis of hippocampus and lateral ventricle reveals regional difference between cognitively stable and declining persons , 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI).

[37]  Jieping Ye,et al.  Sparse methods for biomedical data , 2012, SKDD.

[38]  Shannon L. Risacher,et al.  Cortical surface biomarkers for predicting cognitive outcomes using group l 2,1 norm , 2015, Neurobiology of Aging.

[39]  Andrew J. Saykin,et al.  Regionally specific atrophy of the corpus callosum in AD, MCI and cognitive complaints , 2006, Neurobiology of Aging.

[40]  Abhay Moghekar,et al.  Cortical thickness in relation to clinical symptom onset in preclinical AD , 2016, NeuroImage: Clinical.

[41]  André R. Gonçalves,et al.  Modeling Alzheimer’s Disease Progression with Fused Laplacian Sparse Group Lasso , 2018, ACM Trans. Knowl. Discov. Data.

[42]  M. Weiner,et al.  Automated MRI measures predict progression to Alzheimer's disease , 2010, Neurobiology of Aging.

[43]  R. Killiany,et al.  Alzheimer-signature MRI biomarker predicts AD dementia in cognitively normal adults , 2011, Neurology.

[44]  Johan H. C. Reiber,et al.  MMSE scores correlate with local ventricular enlargement in the spectrum from cognitively normal to Alzheimer disease , 2008, NeuroImage.

[45]  Feiping Nie,et al.  Multi-View Clustering and Feature Learning via Structured Sparsity , 2013, ICML.

[46]  Matteo Mancini,et al.  Transcranial magnetic stimulation of the precuneus enhances memory and neural activity in prodromal Alzheimer's disease , 2018, NeuroImage.

[47]  Jieping Ye,et al.  An accelerated gradient method for trace norm minimization , 2009, ICML '09.

[48]  D. Steffens,et al.  Anxiety symptoms in amnestic mild cognitive impairment are associated with medial temporal atrophy and predict conversion to Alzheimer disease. , 2015, The American journal of geriatric psychiatry : official journal of the American Association for Geriatric Psychiatry.

[49]  A M Dale,et al.  Measuring the thickness of the human cerebral cortex from magnetic resonance images. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[50]  André R. Gonçalves,et al.  Modeling Alzheimer's disease cognitive scores using multi-task sparse group lasso , 2017, Comput. Medical Imaging Graph..

[51]  John J Sidtis,et al.  Corpus callosum shape and size changes in early Alzheimer's disease: a longitudinal MRI study using the OASIS brain database. , 2014, Journal of Alzheimer's disease : JAD.

[52]  Bruce Fischl,et al.  Highly accurate inverse consistent registration: A robust approach , 2010, NeuroImage.

[53]  R. Tibshirani Regression Shrinkage and Selection via the Lasso , 1996 .

[54]  B T Hyman,et al.  Entorhinal cortex pathology in Alzheimer's disease , 1991, Hippocampus.

[55]  Bruce Fischl,et al.  Geometrically Accurate Topology-Correction of Cortical Surfaces Using Nonseparating Loops , 2007, IEEE Transactions on Medical Imaging.

[56]  Shannon L. Risacher,et al.  Sparse multi-task regression and feature selection to identify brain imaging predictors for memory performance , 2011, 2011 International Conference on Computer Vision.

[57]  Andrew J. Saykin,et al.  Identifying the Neuroanatomical Basis of Cognitive Impairment in Alzheimer's Disease by Correlation- and Nonlinearity-Aware Sparse Bayesian Learning , 2014, IEEE Transactions on Medical Imaging.

[58]  A. Simmons,et al.  Entorhinal cortex thickness predicts cognitive decline in Alzheimer's disease. , 2013, Journal of Alzheimer's disease : JAD.

[59]  Dinggang Shen,et al.  Joint estimation of multiple clinical variables of neurological diseases from imaging patterns , 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[60]  D. Louis Collins,et al.  Relating one-year cognitive change in mild cognitive impairment to baseline MRI features , 2009, NeuroImage.

[61]  Hernando Ombao,et al.  Penalized least squares regression methods and applications to neuroimaging , 2011, NeuroImage.

[62]  A. Dale,et al.  Alzheimer disease: quantitative structural neuroimaging for detection and prediction of clinical and structural changes in mild cognitive impairment. , 2009, Radiology.

[63]  A. M. Dale,et al.  A hybrid approach to the skull stripping problem in MRI , 2004, NeuroImage.

[64]  Juan Manuel Górriz,et al.  Projecting independent components of SPECT images for computer aided diagnosis of Alzheimer's disease , 2010, Pattern Recognit. Lett..

[65]  M. Albert,et al.  MRI measures of entorhinal cortex vs hippocampus in preclinical AD , 2002, Neurology.

[66]  Jiayu Zhou,et al.  A multi-task learning formulation for predicting disease progression , 2011, KDD.

[67]  K. Yamashita,et al.  Disconnection of the right superior parietal lobule from the precuneus is associated with memory impairment in oldest-old Alzheimer's disease patients , 2020, Heliyon.

[68]  Jiayu Zhou,et al.  Modeling disease progression via fused sparse group lasso , 2012, KDD.

[69]  K. Davis,et al.  A new rating scale for Alzheimer's disease. , 1984, The American journal of psychiatry.

[70]  R. Mayeux,et al.  Hippocampal and entorhinal atrophy in mild cognitive impairment , 2007, Neurology.

[71]  M. Albert,et al.  Preclinical prediction of AD using neuropsychological tests , 2001, Journal of the International Neuropsychological Society.

[72]  Massimiliano Pontil,et al.  Convex multi-task feature learning , 2008, Machine Learning.

[73]  C. M. Sujatha,et al.  A Method to Differentiate Mild Cognitive Impairment and Alzheimer in MR Images using Eigen Value Descriptors , 2015, Journal of Medical Systems.

[74]  D. Wolpert,et al.  Maintaining internal representations: the role of the human superior parietal lobe , 1998, Nature Neuroscience.

[75]  Jing Li,et al.  Mining brain region connectivity for alzheimer's disease study via sparse inverse covariance estimation , 2009, KDD.

[76]  Dazhe Zhao,et al.  Group Guided Sparse Group Lasso Multi-task Learning for Cognitive Performance Prediction of Alzheimer's Disease , 2017, BI.

[77]  Jiayu Zhou,et al.  Modeling disease progression via multi-task learning , 2013, NeuroImage.

[78]  Jieping Ye,et al.  Efficient Methods for Overlapping Group Lasso , 2011, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[79]  Xia Li,et al.  Longitudinal score prediction for Alzheimer’s disease based on ensemble correntropy and spatial–temporal constraint , 2019, Brain Imaging and Behavior.