CRISPR-Cas9-Mediated Correction of SLC12A3 Gene Mutation Rescues the Gitelman’s Disease Phenotype in a Patient-Derived Kidney Organoid System

The aim of this study is to explore the possibility of modeling Gitelman’s disease (GIT) with human-induced pluripotent stem cell (hiPSC)-derived kidney organoids and to test whether gene correction using CRISPR/Cas9 can rescue the disease phenotype of GIT. To model GIT, we used the hiPSC line CMCi002 (CMC-GIT-001), generated using PBMCs from GIT patients with SLC12A3 gene mutation. Using the CRISPR-Cas9 system, we corrected CMC-GIT-001 mutations and hence generated CMC-GIT-001corr. Both hiPSCs were differentiated into kidney organoids, and we analyzed the GIT phenotype. The number of matured kidney organoids from the CMC-GIT-001corr group was significantly higher, 3.3-fold, than that of the CMC-GIT-001 group (12.2 ± 0.7/cm2 vs. 3.7 ± 0.2/cm2, p < 0.05). In qRT-PCR, performed using harvested kidney organoids, relative sodium chloride cotransporter (NCCT) mRNA levels (normalized to each iPSC) were increased in the CMC-GIT-001corr group compared with the CMC-GIT-001 group (4.1 ± 0.8 vs. 2.5 ± 0.2, p < 0.05). Consistently, immunoblot analysis revealed increased levels of NCCT protein, in addition to other tubular proteins markers, such as LTL and ECAD, in the CMC-GIT-001corr group compared to the CMC-GIT-001 group. Furthermore, we found that increased immunoreactivity of NCCT in the CMC-GIT-001corr group was colocalized with ECAD (a distal tubule marker) using confocal microscopy. Kidney organoids from GIT patient-derived iPSC recapitulated the Gitelman’s disease phenotype, and correction of SLC12A3 mutation utilizing CRISPR-Cas9 technology provided therapeutic insight.

[1]  K. Schlingmann,et al.  The genetic spectrum of Gitelman(-like) syndromes , 2022, Current opinion in nephrology and hypertension.

[2]  Dong-Wook Kim,et al.  Therapeutic correction of hemophilia A using 2D endothelial cells and multicellular 3D organoids derived from CRISPR/Cas9-engineered patient iPSCs. , 2022, Biomaterials.

[3]  N. Carrera,et al.  Molecular Basis, Diagnostic Challenges and Therapeutic Approaches of Bartter and Gitelman Syndromes: A Primer for Clinicians , 2021, International journal of molecular sciences.

[4]  S. Nam,et al.  Human kidney organoids reveal the role of glutathione in Fabry disease , 2021, Experimental & Molecular Medicine.

[5]  P. Yu-Wai-Man,et al.  CRISPR-Cas9 correction of OPA1 c.1334G>A: p.R445H restores mitochondrial homeostasis in dominant optic atrophy patient-derived iPSCs , 2021, Molecular therapy. Nucleic acids.

[6]  Jim Hu,et al.  Potential of helper-dependent Adenoviral vectors in CRISPR-cas9-mediated lung gene therapy , 2021, Cell & bioscience.

[7]  Guangju Ji,et al.  A Novel System for Simple Rapid Adenoviral Vector Construction to Facilitate CRISPR/Cas9-Mediated Genome Editing. , 2021, The CRISPR journal.

[8]  G. González-Aseguinolaza,et al.  Novel vectors and approaches for gene therapy in liver diseases , 2021, JHEP reports : innovation in hepatology.

[9]  G. Ding,et al.  Multi‐centre study of the clinical features and gene variant spectrum of Gitelman syndrome in Chinese children , 2020, Clinical genetics.

[10]  B. Chung,et al.  Generation of a human induced pluripotent stem cell line (CMCi002-A) from a patient with Gitelman's syndrome. , 2020, Stem cell research.

[11]  David R. Liu,et al.  Genome editing with CRISPR–Cas nucleases, base editors, transposases and prime editors , 2020, Nature Biotechnology.

[12]  Benjamin S. Freedman,et al.  Profiling APOL1 Nephropathy Risk Variants in Genome-Edited Kidney Organoids with Single-Cell Transcriptomics. , 2020, Kidney360.

[13]  G. Koh,et al.  Enhanced thrombospondin-1 causes dysfunction of vascular endothelial cells derived from Fabry disease-induced pluripotent stem cells , 2020, EBioMedicine.

[14]  Seokjoong Kim,et al.  Targeted PMP22 TATA-box editing by CRISPR/Cas9 reduces demyelinating neuropathy of Charcot-Marie-Tooth disease type 1A in mice , 2019, Nucleic acids research.

[15]  R. Nishinakamura,et al.  Organoids from Nephrotic Disease-Derived iPSCs Identify Impaired NEPHRIN Localization and Slit Diaphragm Formation in Kidney Podocytes , 2018, Stem cell reports.

[16]  S. Ekker,et al.  Precision gene editing technology and applications in nephrology , 2018, Nature Reviews Nephrology.

[17]  Benjamin S. Freedman,et al.  CRISPR Gene Editing in the Kidney. , 2018, American journal of kidney diseases : the official journal of the National Kidney Foundation.

[18]  Matthias Kretzler,et al.  High-Throughput Screening Enhances Kidney Organoid Differentiation from Human Pluripotent Stem Cells and Enables Automated Multidimensional Phenotyping. , 2018, Cell stem cell.

[19]  Benjamin S. Freedman,et al.  Organoid cystogenesis reveals a critical role of microenvironment in human polycystic kidney disease , 2017, Nature materials.

[20]  Hong Wang,et al.  Naïve Induced Pluripotent Stem Cells Generated From β-Thalassemia Fibroblasts Allow Efficient Gene Correction With CRISPR/Cas9 , 2015, Stem cells translational medicine.

[21]  Jing Zhou,et al.  Modelling kidney disease with CRISPR-mutant kidney organoids derived from human pluripotent epiblast spheroids , 2015, Nature Communications.

[22]  Benjamin S. Freedman Modeling Kidney Disease with iPS Cells , 2015, Biomarker insights.

[23]  A. Subramanya,et al.  Distal convoluted tubule. , 2014, Clinical journal of the American Society of Nephrology : CJASN.

[24]  Y. Kan,et al.  Seamless gene correction of β-thalassemia mutations in patient-specific iPSCs using CRISPR/Cas9 and piggyBac , 2014, Genome research.

[25]  Daesik Kim,et al.  Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins , 2014, Genome research.

[26]  Jin-Soo Kim,et al.  Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases , 2014, Bioinform..

[27]  D. Kahila,et al.  Spectrum of mutations in Gitelman syndrome. , 2011, Journal of the American Society of Nephrology : JASN.

[28]  P. Meneton,et al.  Altered renal distal tubule structure and renal Na(+) and Ca(2+) handling in a mouse model for Gitelman's syndrome. , 2004, Journal of the American Society of Nephrology : JASN.

[29]  D. Ellison The thiazide-sensitive na-cl cotransporter and human disease: reemergence of an old player. , 2003, Journal of the American Society of Nephrology : JASN.

[30]  L. Costanzo Localization of diuretic action in microperfused rat distal tubules: Ca and Na transport. , 1985, The American journal of physiology.

[31]  D. Bolignano,et al.  Gitelman Syndrome: Consensus and Guidance From a Kidney Disease: Improving Global Outcomes (KDIGO) Controversies Conference , 2017 .

[32]  Aiwu Lu,et al.  Gene Editing: Powerful New Tools for Nephrology Research and Therapy. , 2016, Journal of the American Society of Nephrology : JASN.

[33]  L. Welt,et al.  A new familial disorder characterized by hypokalemia and hypomagnesemia. , 1966, Transactions of the Association of American Physicians.