GeoChip 4: a functional gene‐array‐based high‐throughput environmental technology for microbial community analysis
暂无分享,去创建一个
Hao Yu | Kai Xue | Aijie Wang | Ye Deng | Qichao Tu | Yujia Qin | Christopher L. Hemme | Zhili He | Tong Yuan | Liyou Wu | Jizhong Zhou | Jizhong Zhou | Zhili He | Liyou Wu | Aijie Wang | K. Xue | Ye Deng | Qichao Tu | Aifen Zhou | J. V. Van Nostrand | Yujia Qin | James W. Voordeckers | Yong-Jin Lee | Z. Shi | Hao Yu | James Voordeckers | Aifen Zhou | Yong-Jin Lee | Joy D Van Nostrand | T. Yuan | Christopher L Hemme | Zhou Shi
[1] Kristin Bergauer,et al. Archaeal amoA gene diversity points to distinct biogeography of ammonia-oxidizing Crenarchaeota in the ocean , 2013, Environmental microbiology.
[2] Kai Xue,et al. Stochastic Assembly Leads to Alternative Communities with Distinct Functions in a Bioreactor Microbial Community , 2013, mBio.
[3] Qiang Feng,et al. A metagenome-wide association study of gut microbiota in type 2 diabetes , 2012, Nature.
[4] Eoin L. Brodie,et al. Metagenomic analysis of a stable trichloroethene-degrading microbial community , 2012, The ISME Journal.
[5] David C. Smith,et al. Global distribution of microbial abundance and biomass in subseafloor sediment , 2012, Proceedings of the National Academy of Sciences.
[6] B. Díez,et al. High cyanobacterial nifH gene diversity in Arctic seawater and sea ice brine. , 2012, Environmental microbiology reports.
[7] Jizhong Zhou,et al. Applications of functional gene microarrays for profiling microbial communities. , 2012, Current opinion in biotechnology.
[8] A. Spormann,et al. The Hydrogenase Chip: a tiling oligonucleotide DNA microarray technique for characterizing hydrogen-producing and -consuming microbes in microbial communities , 2011, The ISME Journal.
[9] J. Clemente,et al. Human gut microbiome viewed across age and geography , 2012, Nature.
[10] Jizhong Zhou,et al. Shifts in soil microorganisms in response to warming are consistent across a range of Antarctic environments , 2011, The ISME Journal.
[11] Jizhong Zhou,et al. Characterization of microbial communities during anode biofilm reformation in a two-chambered microbial electrolysis cell (MEC). , 2012, Journal of biotechnology.
[12] A. Svennerholm,et al. Strategies to overexpress enterotoxigenic Escherichia coli (ETEC) colonization factors for the construction of oral whole-cell inactivated ETEC vaccine candidates , 2012, Applied Microbiology and Biotechnology.
[13] B. Roe,et al. Elevated Carbon Dioxide Alters the Structure of Soil Microbial Communities , 2012, Applied and Environmental Microbiology.
[14] Jizhong Zhou,et al. Microbial mediation of carbon-cycle feedbacks to climate warming , 2012 .
[15] Wei E Huang,et al. When single cell technology meets omics, the new toolbox of analytical biotechnology is emerging. , 2012, Current opinion in biotechnology.
[16] Ye Deng,et al. Development of functional gene microarrays for microbial community analysis. , 2012, Current opinion in biotechnology.
[17] Jizhong Zhou,et al. Huanglongbing alters the structure and functional diversity of microbial communities associated with citrus rhizosphere , 2011, The ISME Journal.
[18] M. David,et al. Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw , 2011, Nature.
[19] M. Laine,et al. The Capsule of Porphyromonas gingivalis Leads to a Reduction in the Host Inflammatory Response, Evasion of Phagocytosis, and Increase in Virulence , 2011, Infection and Immunity.
[20] A. Buckling,et al. Bacteria-Phage Antagonistic Coevolution in Soil , 2011, Science.
[21] Jizhong Zhou,et al. Functional gene diversity of soil microbial communities from five oil-contaminated fields in China , 2011, The ISME Journal.
[22] S. Tringe,et al. Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen , 2011, Science.
[23] Martin Rosner,et al. First Investigation of the Microbiology of the Deepest Layer of Ocean Crust , 2010, PloS one.
[24] P. D’haeseleer,et al. Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria , 2010, Science.
[25] Jizhong Zhou,et al. Microbial Communities and Functional Genes Associated with Soil Arsenic Contamination and the Rhizosphere of the Arsenic-Hyperaccumulating Plant Pteris vittata L , 2010, Applied and Environmental Microbiology.
[26] M. Schatz,et al. Integrated Microbial Survey Analysis of Prokaryotic Communities for the PhyloChip Microarray , 2010, Applied and Environmental Microbiology.
[27] Jizhong Zhou,et al. Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2. , 2010, Ecology letters.
[28] Wendy S. Schackwitz,et al. One Bacterial Cell, One Complete Genome , 2010, PloS one.
[29] S. Lory,et al. The Pseudomonas aeruginosa Pathogenicity Island PAPI-1 Is Transferred via a Novel Type IV Pilus , 2010, Journal of bacteriology.
[30] Christopher L. Hemme,et al. GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity , 2010, The ISME Journal.
[31] P. Bork,et al. A human gut microbial gene catalogue established by metagenomic sequencing , 2010, Nature.
[32] Jizhong Zhou,et al. Responses of microbial community functional structures to pilot-scale uranium in situ bioremediation , 2010, The ISME Journal.
[33] Jizhong Zhou,et al. Microbial functional structure of Montastraea faveolata, an important Caribbean reef-building coral, differs between healthy and yellow-band diseased colonies. , 2010, Environmental microbiology.
[34] M. Metzker. Sequencing technologies — the next generation , 2010, Nature Reviews Genetics.
[35] E. E. L O G A N,et al. Geochip-Based Functional Gene Analysis of Anodophilic Communities in Microbial Electrolysis Cells under Different Operational Modes , 2010 .
[36] Jizhong Zhou,et al. Development of a Common Oligonucleotide Reference Standard for Microarray Data Normalization and Comparison across Different Microbial Communities , 2009, Applied and Environmental Microbiology.
[37] Philip E. Bourne,et al. The Evolutionary History of Protein Domains Viewed by Species Phylogeny , 2009, PloS one.
[38] Ye Deng,et al. Microarray-based analysis of microbial functional diversity along an oil contamination gradient in oil field. , 2009, FEMS microbiology ecology.
[39] Ye Deng,et al. GeoChip-based analysis of functional microbial communities during the reoxidation of a bioreduced uranium-contaminated aquifer. , 2009, Environmental microbiology.
[40] Jizhong Zhou,et al. Degradation of Diffuse Pesticide Contaminants: Screening for Microbial Potential Using a Functional Gene Microarray , 2009 .
[41] S. Normark,et al. Bacterial adhesins in host-microbe interactions. , 2009, Cell host & microbe.
[42] Jizhong Zhou,et al. Tracking Functional Guilds: “Dehalococcoides” spp. in European River Basins Contaminated with Hexachlorobenzene , 2009, Applied and Environmental Microbiology.
[43] Jonathan D. G. Jones,et al. Application of 'next-generation' sequencing technologies to microbial genetics , 2009, Nature Reviews Microbiology.
[44] W. Ansorge. Next-generation DNA sequencing techniques. , 2009, New biotechnology.
[45] Jizhong Zhou,et al. GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent , 2009, Proceedings of the National Academy of Sciences.
[46] R. Novick,et al. Phage-Mediated Intergeneric Transfer of Toxin Genes , 2009, Science.
[47] Hanlee P. Ji,et al. Next-generation DNA sequencing , 2008, Nature Biotechnology.
[48] N. Ostle,et al. Microbial contributions to climate change through carbon cycle feedbacks , 2008, The ISME Journal.
[49] Charles T. Garten,et al. Spatial scaling of functional gene diversity across various microbial taxa , 2008, Proceedings of the National Academy of Sciences.
[50] Zhili He,et al. Empirical Evaluation of a New Method for Calculating Signal-to-Noise Ratio for Microarray Data Analysis , 2008, Applied and Environmental Microbiology.
[51] Julian Parkhill,et al. Single-cell genomics , 2008, Nature Reviews Microbiology.
[52] E. Mardis. The impact of next-generation sequencing technology on genetics. , 2008, Trends in genetics : TIG.
[53] A. H. Wang,et al. Discovery of virulence factors of pathogenic bacteria. , 2008, Current opinion in chemical biology.
[54] J. Galloway,et al. An Earth-system perspective of the global nitrogen cycle , 2008, Nature.
[55] Roger S Lasken,et al. Single-cell genomic sequencing using Multiple Displacement Amplification. , 2007, Current opinion in microbiology.
[56] C. Suttle. Marine viruses — major players in the global ecosystem , 2007, Nature Reviews Microbiology.
[57] G. Casella,et al. Pyrosequencing enumerates and contrasts soil microbial diversity , 2007, The ISME Journal.
[58] Jizhong Zhou,et al. Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs) , 2007, The ISME Journal.
[59] Baohua Gu,et al. GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes , 2007, The ISME Journal.
[60] Eoin L. Brodie,et al. Urban aerosols harbor diverse and dynamic bacterial populations , 2007, Proceedings of the National Academy of Sciences.
[61] D. Sinderen,et al. Bacteriophage: genetics and molecular biology. , 2007 .
[62] Eoin L Brodie,et al. Application of a High-Density Oligonucleotide Microarray Approach To Study Bacterial Population Dynamics during Uranium Reduction and Reoxidation , 2006, Applied and Environmental Microbiology.
[63] Susan M. Huse,et al. Microbial diversity in the deep sea and the underexplored “rare biosphere” , 2006, Proceedings of the National Academy of Sciences.
[64] Christopher W. Schadt,et al. Microarray-Based Analysis of Subnanogram Quantities of Microbial Community DNAs by Using Whole-Community Genome Amplification , 2006, Applied and Environmental Microbiology.
[65] Jo Handelsman,et al. Toward a Census of Bacteria in Soil , 2006, PLoS Comput. Biol..
[66] H. Seitz,et al. Bacteriophage replication modules. , 2006, FEMS microbiology reviews.
[67] Sung-Keun Rhee,et al. Improvement of Oligonucleotide Probe Design Criteria for Functional Gene Microarrays in Environmental Applications , 2006, Applied and Environmental Microbiology.
[68] Mark E.J. Woolhouse,et al. Host Range and Emerging and Reemerging Pathogens , 2005, Emerging infectious diseases.
[69] Jizhong Zhou,et al. Selection of optimal oligonucleotide probes for microarrays using multiple criteria, global alignment and parameter estimation , 2005, Nucleic acids research.
[70] Jason D. Gans,et al. Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil , 2005, Science.
[71] Jizhong Zhou,et al. Empirical Establishment of Oligonucleotide Probe Design Criteria , 2005, Applied and Environmental Microbiology.
[72] Jizhong Zhou,et al. Detection of Genes Involved in Biodegradation and Biotransformation in Microbial Communities by Using 50-Mer Oligonucleotide Microarrays , 2004, Applied and Environmental Microbiology.
[73] M. Weinbauer. Ecology of prokaryotic viruses. , 2004, FEMS microbiology reviews.
[74] Jizhong Zhou,et al. Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples. , 2004, BioTechniques.
[75] C. Suttle. The significance of viruses to mortality in aquatic microbial communities , 1994, Microbial Ecology.
[76] S. Giovannoni,et al. The uncultured microbial majority. , 2003, Annual review of microbiology.
[77] Mark J van Raaij,et al. The structure of the receptor-binding domain of the bacteriophage T4 short tail fibre reveals a knitted trimeric metal-binding fold. , 2003, Journal of molecular biology.
[78] N. Stralis-Pavese,et al. Development and validation of a diagnostic microbial microarray for methanotrophs. , 2003, Environmental Microbiology.
[79] John A Tainer,et al. Type IV pilin structure and assembly: X-ray and EM analyses of Vibrio cholerae toxin-coregulated pilus and Pseudomonas aeruginosa PAK pilin. , 2003, Molecular cell.
[80] J. Fry,et al. Elevated Abundance of Bacteriophage Infecting Bacteria in Soil , 2003, Applied and Environmental Microbiology.
[81] J. Helmann,et al. Regulation of the Bacillus subtilis fur and perR Genes by PerR: Not All Members of the PerR Regulon Are Peroxide Inducible , 2002, Journal of bacteriology.
[82] Dorothea K. Thompson,et al. Development and Evaluation of Functional Gene Arrays for Detection of Selected Genes in the Environment , 2001, Applied and Environmental Microbiology.
[83] Yiqi Luo,et al. Acclimatization of soil respiration to warming in a tall grass prairie , 2001, Nature.
[84] M E Woolhouse,et al. Risk factors for human disease emergence. , 2001, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[85] S. Mazmanian,et al. Sortase‐catalysed anchoring of surface proteins to the cell wall of Staphylococcus aureus , 2001, Molecular microbiology.
[86] P. Reich,et al. [Letters to nature] , 1975, Nature.
[87] B Demple,et al. Redox-operated genetic switches: the SoxR and OxyR transcription factors. , 2001, Trends in biotechnology.
[88] P. Cossart,et al. Sortase, a universal target for therapeutic agents against gram-positive bacteria? , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[89] I. Wang,et al. Phages will out: strategies of host cell lysis. , 2000, Trends in microbiology.
[90] K. Wommack,et al. Virioplankton: Viruses in Aquatic Ecosystems , 2000, Microbiology and Molecular Biology Reviews.
[91] J. Galán,et al. Type III Secretion Machines: Bacterial Devices for Protein Delivery into Host Cells , 1999 .
[92] E. Bremer,et al. Uptake and synthesis of compatible solutes as microbial stress responses to high-osmolality environments , 1998, Archives of Microbiology.
[93] W. Whitman,et al. Prokaryotes: the unseen majority. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[94] Sean R. Eddy,et al. Profile hidden Markov models , 1998, Bioinform..
[95] S Falkow,et al. Copyright © 1997, American Society for Microbiology Common Themes in Microbial Pathogenicity Revisited , 2022 .
[96] José Costa,et al. PicoGreen quantitation of DNA: effective evaluation of samples pre- or post-PCR , 1996, Nucleic Acids Res..
[97] J. Tiedje,et al. DNA recovery from soils of diverse composition , 1996, Applied and environmental microbiology.
[98] J. Neilands,et al. Siderophores: Structure and Function of Microbial Iron Transport Compounds (*) , 1995, The Journal of Biological Chemistry.
[99] C. Kurland,et al. Gratuitous overexpression of genes in Escherichia coli leads to growth inhibition and ribosome destruction , 1995, Journal of bacteriology.
[100] G. Bratbak,et al. High abundance of viruses found in aquatic environments , 1989, Nature.
[101] W. Verstraete,et al. Ecological Significance of Siderophores in Soil , 1988 .
[102] M. Eschbach,et al. DNA sequence of genes 38 encoding a receptor-recognizing protein of bacteriophages T2, K3 and of K3 host range mutants. , 1987, Journal of molecular biology.
[103] A. Goldberg,et al. Production of abnormal proteins in E. coli stimulates transcription of ion and other heat shock genes , 1985, Cell.
[104] H. Hoffmann- Berling,et al. RELEASE OF MALE-SPECIFIC BACTERIOPHAGES FROM SURVIVING HOST BACTERIA. , 1964, Virology.
[105] P. Sassone-Corsi,et al. Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil , 2022 .