Chromatin organization marks exon-intron structure
暂无分享,去创建一个
[1] S. Berget,et al. Exon definition may facilitate splice site selection in RNAs with multiple exons. , 1990, Molecular and cellular biology.
[2] E N Trifonov,et al. Splice junctions follow a 205-base ladder. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[3] S. Berget. Exon Recognition in Vertebrate Splicing (*) , 1995, The Journal of Biological Chemistry.
[4] J. Valcárcel,et al. Alternative pre-mRNA splicing: the logic of combinatorial control. , 2000, Trends in biochemical sciences.
[5] B. Graveley. Alternative splicing: increasing diversity in the proteomic world. , 2001, Trends in genetics : TIG.
[6] M. Garcia-Blanco,et al. The Transcription Elongation Factor CA150 Interacts with RNA Polymerase II and the Pre-mRNA Splicing Factor SF1 , 2001, Molecular and Cellular Biology.
[7] C. Allis,et al. Translating the Histone Code , 2001, Science.
[8] A. Kornblihtt,et al. Transcriptional Activators Differ in Their Abilities to Control Alternative Splicing* , 2002, The Journal of Biological Chemistry.
[9] K. J. Howe. RNA polymerase II conducts a symphony of pre-mRNA processing activities. , 2002, Biochimica et biophysica acta.
[10] D. Black. Mechanisms of alternative pre-messenger RNA splicing. , 2003, Annual review of biochemistry.
[11] A. Kornblihtt,et al. A slow RNA polymerase II affects alternative splicing in vivo. , 2003, Molecular cell.
[12] Gene W. Yeo,et al. Systematic Identification and Analysis of Exonic Splicing Silencers , 2004, Cell.
[13] J. Lieb,et al. Evidence for nucleosome depletion at active regulatory regions genome-wide , 2004, Nature Genetics.
[14] B. Sarg,et al. Histone H4-Lysine 20 Monomethylation Is Increased in Promoter and Coding Regions of Active Genes and Correlates with Hyperacetylation* , 2005, Journal of Biological Chemistry.
[15] Clifford A. Meyer,et al. Genomic mapping of RNA polymerase II reveals sites of co-transcriptional regulation in human cells , 2005, Genome Biology.
[16] Edward N Trifonov,et al. Gene splice sites correlate with nucleosome positions. , 2004, Gene.
[17] Irene K. Moore,et al. A genomic code for nucleosome positioning , 2006, Nature.
[18] M. Yaniv,et al. The human SWI/SNF subunit Brm is a regulator of alternative splicing , 2006, Nature Structural &Molecular Biology.
[19] G. Ast,et al. Comparative analysis identifies exonic splicing regulatory sequences--The complex definition of enhancers and silencers. , 2006, Molecular cell.
[20] A. Kornblihtt. Chromatin, transcript elongation and alternative splicing , 2006, Nature Structural &Molecular Biology.
[21] Christopher R. Vakoc,et al. Profile of Histone Lysine Methylation across Transcribed Mammalian Chromatin , 2006, Molecular and Cellular Biology.
[22] M. Hild,et al. Localized H3K36 methylation states define histone H4K16 acetylation during transcriptional elongation in Drosophila , 2007, The EMBO journal.
[23] T. Kouzarides. Chromatin Modifications and Their Function , 2007, Cell.
[24] Gene W. Yeo,et al. Discovery and Analysis of Evolutionarily Conserved Intronic Splicing Regulatory Elements , 2007, PLoS Genetics.
[25] T. Mikkelsen,et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells , 2007, Nature.
[26] E. Lander,et al. The Mammalian Epigenome , 2007, Cell.
[27] Paul Tempst,et al. Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing. , 2007, Molecular cell.
[28] R. Young,et al. A Chromatin Landmark and Transcription Initiation at Most Promoters in Human Cells , 2007, Cell.
[29] A. Kornblihtt. Coupling transcription and alternative splicing. , 2007, Advances in experimental medicine and biology.
[30] G. Ast,et al. SR proteins: a foot on the exon before the transition from intron to exon definition. , 2007, Trends in genetics : TIG.
[31] Dustin E. Schones,et al. High-Resolution Profiling of Histone Methylations in the Human Genome , 2007, Cell.
[32] J. Berglund,et al. A comprehensive computational characterization of conserved mammalian intronic sequences reveals conserved motifs associated with constitutive and alternative splicing. , 2007, Genome research.
[33] Peter A. Jones,et al. The Epigenomics of Cancer , 2007, Cell.
[34] M. Carmo-Fonseca,et al. The CTD role in cotranscriptional RNA processing and surveillance , 2008, FEBS letters.
[35] C. Muchardt,et al. Splicing, transcription, and chromatin: a ménage à trois. , 2008, Current opinion in genetics & development.
[36] Juliane C. Dohm,et al. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing , 2008, Nucleic acids research.
[37] Ian M. Fingerman,et al. Histone H3 K36 methylation is mediated by a trans-histone methylation pathway involving an interaction between Set2 and histone H4. , 2008, Genes & development.
[38] Steven M. Johnson,et al. A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning. , 2008, Genome research.
[39] Gabor T. Marth,et al. Whole-genome sequencing and variant discovery in C. elegans , 2008, Nature Methods.
[40] Nevan J Krogan,et al. A single SR-like protein, Npl3, promotes pre-mRNA splicing in budding yeast. , 2008, Molecular cell.
[41] Raja Jothi,et al. Genome-wide identification of in vivo protein–DNA binding sites from ChIP-Seq data , 2008, Nucleic acids research.
[42] Dustin E. Schones,et al. Dynamic Regulation of Nucleosome Positioning in the Human Genome , 2008, Cell.
[43] S. Batzoglou,et al. Genome-Wide Analysis of Transcription Factor Binding Sites Based on ChIP-Seq Data , 2008, Nature Methods.
[44] Stephan C. Schuster,et al. Nucleosome organization in the Drosophila genome , 2008, Nature.
[45] Michael Q. Zhang,et al. Combinatorial patterns of histone acetylations and methylations in the human genome , 2008, Nature Genetics.
[46] D. Burstein,et al. Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes. , 2007, Genome research.
[47] George Nikolić,et al. Ménage à trois. , 2008, Heart & lung : the journal of critical care.
[48] Yaniv Lubling,et al. Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals , 2008, PLoS Comput. Biol..
[49] C. Burge,et al. Splicing regulation: from a parts list of regulatory elements to an integrated splicing code. , 2008, RNA.
[50] L. Mahadevan,et al. Dynamic histone H3 methylation during gene induction: HYPB/Setd2 mediates all H3K36 trimethylation , 2007, The EMBO journal.
[51] Irene K. Moore,et al. The DNA-encoded nucleosome organization of a eukaryotic genome , 2009, Nature.
[52] M. Alló,et al. Neuronal cell depolarization induces intragenic chromatin modifications affecting NCAM alternative splicing , 2009, Proceedings of the National Academy of Sciences.
[53] R. Loomis,et al. Chromatin binding of SRp20 and ASF/SF2 and dissociation from mitotic chromosomes is modulated by histone H3 serine 10 phosphorylation. , 2009, Molecular cell.
[54] L. Tora,et al. Human U1 snRNA forms a new chromatin-associated snRNP with TAF15 , 2009, EMBO reports.
[55] Melissa J. Moore,et al. Pre-mRNA Processing Reaches Back toTranscription and Ahead to Translation , 2009, Cell.
[56] J. Ahringer,et al. Differential chromatin marking of introns and expressed exons by H3K36me3 , 2008, Nature Genetics.
[57] Christoforos Nikolaou,et al. Nucleosome positioning as a determinant of exon recognition , 2009, Nature Structural &Molecular Biology.
[58] R. Amann,et al. Predictive Identification of Exonic Splicing Enhancers in Human Genes , 2022 .