Enzyme-amplified electronic logic gates based on split/intact aptamers.

A series of enzyme-amplified electronic logic gates (OR, AND, NOR, and NAND) for one-spot simultaneous monitoring of small molecules and proteins has been constructed at the molecular level. This simple but universal system is based on target-induced self-assembly of split aptamer fragments or target-induced conformational changes of intact aptamers. For the OR and AND logic operations, the split aptamer fragments were used as the molecular recognition components, while for the NOR and NAND logic operations, the intact aptamers were used as the molecular recognition components. Using ATP and thrombin as inputs, the split/intact aptamers as molecular recognition elements, biotin as a tracer, and SA-HR as a reporter molecule, the electronic logic operations can be easily realized by generating amplified current signals as outputs. The logic system is robust and can be applied to human serum samples with excellent selectivity. Importantly, the reversibility of these logic gates makes the electronic system feasible to perform the set-reset function. Our work not only provides a "smart" and flexible logic platform for ATP and thrombin sensing, but also can be expanded for other ligands assay, such as adenosine monophosphate (AMP), theophylline, and cocaine, by rationally splitting their aptamer sequences into two fragments.

[1]  Guangchao Zhao,et al.  A label-free electrochemical RNA aptamer for selective detection of theophylline , 2010 .

[2]  Joseph Wang,et al.  DNAzyme logic-controlled biofuel cells for self-powered biosensors. , 2012, Chemical communications.

[3]  Yi Xiao,et al.  Label-free, dual-analyte electrochemical biosensors: a new class of molecular-electronic logic gates. , 2010, Journal of the American Chemical Society.

[4]  Lingwen Zeng,et al.  Computational lateral flow biosensor for proteins and small molecules: a new class of strip logic gates. , 2012, Analytical chemistry.

[5]  Xiaogang Qu,et al.  Combination of Graphene Oxide and Thiol‐Activated DNA Metallization for Sensitive Fluorescence Turn‐On Detection of Cysteine and Their Use for Logic Gate Operations , 2011 .

[6]  L. Steinbock,et al.  Measuring single small molecule binding via rupture forces of a split aptamer. , 2011, Journal of the American Chemical Society.

[7]  Kang Sun,et al.  Resettable, multi-readout logic gates based on controllably reversible aggregation of gold nanoparticles. , 2011, Angewandte Chemie.

[8]  Fan Yang,et al.  Colorimetric logic gates for small molecules using split/integrated aptamers and unmodified gold nanoparticles. , 2011, Chemical communications.

[9]  Yun Xiang,et al.  A reagentless, disposable and multiplexed electronic biosensing platform: application to molecular logic gates. , 2011, Biosensors & bioelectronics.

[10]  G. Seelig,et al.  Enzyme-Free Nucleic Acid Logic Circuits , 2022 .

[11]  Evgeny Katz,et al.  High-fidelity determination of security threats via a Boolean biocatalytic cascade. , 2011, Chemical communications.

[12]  Z. Chen,et al.  Determination of nanograms of proteins based on decreased resonance light scattering of zwitterionic gemini surfactant. , 2009, Analytical biochemistry.

[13]  Signal-on electrochemiluminescence biosensor for thrombin based on target-induced conjunction of split aptamer fragments. , 2010, Chemical communications.

[14]  Michael Famulok,et al.  Aptamers for allosteric regulation. , 2011, Nature chemical biology.

[15]  I. Willner,et al.  Multiplexed aptasensors and amplified DNA sensors using functionalized graphene oxide: application for logic gate operations. , 2012, ACS nano.

[16]  Guonan Chen,et al.  An ultrasensitive signal-on electrochemical aptasensor via target-induced conjunction of split aptamer fragments. , 2010, Biosensors & bioelectronics.

[17]  Ming Zhou,et al.  Bioelectrochemical interface engineering: toward the fabrication of electrochemical biosensors, biofuel cells, and self-powered logic biosensors. , 2011, Accounts of chemical research.

[18]  R. Levine,et al.  DNA computing circuits using libraries of DNAzyme subunits. , 2010, Nature nanotechnology.

[19]  Sai Bi,et al.  Colorimetric logic gates based on supramolecular DNAzyme structures. , 2010, Angewandte Chemie.

[20]  Kevin W Plaxco,et al.  High specificity, electrochemical sandwich assays based on single aptamer sequences and suitable for the direct detection of small-molecule targets in blood and other complex matrices. , 2009, Journal of the American Chemical Society.

[21]  Weihong Tan,et al.  Colorimetric logic gates based on aptamer-crosslinked hydrogels. , 2012, Chemical communications.

[22]  Evgeny Katz,et al.  Electronic interfaces switchable by logically processed multiple biochemical and physiological signals , 2012 .

[23]  Y. Chai,et al.  A reagentless and disposable electronic genosensor: from multiplexed analysis to molecular logic gates. , 2011, Chemical communications.

[24]  Evgeny Katz,et al.  Bacteria-based AND logic gate: a decision-making and self-powered biosensor. , 2011, Chemical communications.

[25]  Joseph Wang,et al.  A self-powered "sense-act-treat" system that is based on a biofuel cell and controlled by boolean logic. , 2012, Angewandte Chemie.

[26]  Wenjie Zheng,et al.  A highly selective and sensitive on-off sensor for silver ions and cysteine by light scattering technique of DNA-functionalized gold nanoparticles. , 2011, Chemical communications.

[27]  Michael Dröscher,et al.  Angewandte Chemie International Edition feiert 50. Geburtstag , 2011 .

[28]  Jan Halámek,et al.  Multianalyte digital enzyme biosensors with built-in Boolean logic. , 2012, Analytical chemistry.

[29]  Yan Du,et al.  Aptamer-controlled biofuel cells in logic systems and used as self-powered and intelligent logic aptasensors. , 2010, Journal of the American Chemical Society.

[30]  Vladimir Privman,et al.  Enzyme-based logic systems for information processing. , 2009, Chemical Society reviews.

[31]  Ming Zhou,et al.  Biofuel Cells for Self-Powered Electrochemical Biosensing and Logic Biosensing: A Review , 2012 .

[32]  Chun-Yu Hsu,et al.  Molecular beacon-based half-adder and half-subtractor. , 2012, Chemical communications.

[33]  Ming Zhou,et al.  Boolean logic gates based on oxygen-controlled biofuel cell in "one pot" , 2011 .