Recent insights into the tick microbiome gained through next-generation sequencing

[1]  C. Davis,et al.  Comparison of bacterial 16S rRNA variable regions for microbiome surveys of ticks. , 2017, Ticks and tick-borne diseases.

[2]  S. Kelley,et al.  Endosymbiont interference and microbial diversity of the Pacific coast tick, Dermacentor occidentalis, in San Diego County, California , 2017, PeerJ.

[3]  Mick Watson,et al.  A Review of Bioinformatics Tools for Bio-Prospecting from Metagenomic Sequence Data , 2017, Front. Genet..

[4]  S. Higgs,et al.  Biological Control Strategies for Mosquito Vectors of Arboviruses , 2017, Insects.

[5]  S. Dowd,et al.  Pyrosequencing based assessment of bacterial diversity in Turkish Rhipicephalus annulatus and Dermacentor marginatus ticks (Acari: Ixodidae) , 2017, Parasitology Research.

[6]  E. Fikrig,et al.  Pathogen-mediated manipulation of arthropod microbiota to promote infection , 2017, Proceedings of the National Academy of Sciences.

[7]  Hélène Touzet,et al.  Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics , 2017, PloS one.

[8]  A. Swei,et al.  Tick microbiome and pathogen acquisition altered by host blood meal , 2016, The ISME Journal.

[9]  F. Moore,et al.  The microbiome of neotropical ticks parasitizing on passerine migratory birds. , 2017, Ticks and tick-borne diseases.

[10]  V. Holíková,et al.  Tick-borne viruses. , 2017, Acta virologica.

[11]  J. Fuente,et al.  Strategies for new and improved vaccines against ticks and tick‐borne diseases , 2016, Parasite immunology.

[12]  Edward C. Holmes,et al.  Redefining the invertebrate RNA virosphere , 2016, Nature.

[13]  S. Karim,et al.  A snapshot of the microbiome of Amblyomma tuberculatum ticks infesting the gopher tortoise, an endangered species. , 2016, Ticks and tick-borne diseases.

[14]  R. Prill,et al.  Microbiome changes through ontogeny of a tick pathogen vector , 2016, Molecular ecology.

[15]  Michael A. Peabody,et al.  A comprehensive method for amplicon-based and metagenomic characterization of viruses, bacteria, and eukaryotes in freshwater samples , 2016, Microbiome.

[16]  F. Lim,et al.  Bacterial community in Haemaphysalis ticks of domesticated animals from the Orang Asli communities in Malaysia. , 2016, Ticks and tick-borne diseases.

[17]  M. Vatn,et al.  Simultaneous purification of DNA and RNA from microbiota in a single colonic mucosal biopsy , 2016, BMC Research Notes.

[18]  J. McPherson,et al.  Coming of age: ten years of next-generation sequencing technologies , 2016, Nature Reviews Genetics.

[19]  J. Nicholson,et al.  Impact of the gut microbiota on inflammation, obesity, and metabolic disease , 2016, Genome Medicine.

[20]  K. Brayton,et al.  The bacterial microbiome of Dermacentor andersoni ticks influences pathogen susceptibility , 2016, The ISME Journal.

[21]  J. Fang,et al.  Systematic review with meta‐analysis: long‐term outcomes of faecal microbiota transplantation for Clostridium difficile infection , 2016, Alimentary pharmacology & therapeutics.

[22]  D. Raoult,et al.  Candidatus Coxiella massiliensis Infection , 2016, Emerging infectious diseases.

[23]  J. DeBruyn,et al.  The Microbiome of Ehrlichia-Infected and Uninfected Lone Star Ticks (Amblyomma americanum) , 2016, PloS one.

[24]  Alexander W. Gofton,et al.  Bacterial Profiling Reveals Novel “Ca. Neoehrlichia”, Ehrlichia, and Anaplasma Species in Australian Human-Biting Ticks , 2015, PloS one.

[25]  K. Brayton,et al.  The characterization and manipulation of the bacterial microbiome of the Rocky Mountain wood tick, Dermacentor andersoni , 2015, Parasites & Vectors.

[26]  Z. Hubálek,et al.  Emerging horizons for tick-borne pathogens: from the 'one pathogen-one disease' vision to the pathobiome paradigm. , 2015, Future microbiology.

[27]  O. Duron,et al.  The Importance of Ticks in Q Fever Transmission: What Has (and Has Not) Been Demonstrated? , 2015, Trends in parasitology.

[28]  J. Venter,et al.  Library preparation methodology can influence genomic and functional predictions in human microbiome research , 2015, Proceedings of the National Academy of Sciences.

[29]  S. Karim,et al.  An insight into the functional role of thioredoxin reductase, a selenoprotein, in maintaining normal native microbiota in the Gulf Coast tick (Amblyomma maculatum) , 2015, Insect molecular biology.

[30]  J. de la Fuente,et al.  Tick vaccines: current status and future directions , 2015, Expert review of vaccines.

[31]  J. Bailey,et al.  Variation in the Microbiota of Ixodes Ticks with Regard to Geography, Species, and Sex , 2015, Applied and Environmental Microbiology.

[32]  E. Fikrig,et al.  Tick microbiome: the force within. , 2015, Trends in parasitology.

[33]  Dáithí C. Murray,et al.  Inhibition of the endosymbiont “Candidatus Midichloria mitochondrii” during 16S rRNA gene profiling reveals potential pathogens in Ixodes ticks from Australia , 2015, Parasites & Vectors.

[34]  Stephen J. Bent,et al.  Whole genome capture of vector-borne pathogens from mixed DNA samples: a case study of Borrelia burgdorferi , 2015, BMC Genomics.

[35]  InSong Koh,et al.  Deciphering the human microbiome using next-generation sequencing data and bioinformatics approaches. , 2015, Methods.

[36]  D. Rusch,et al.  Concordance of bacterial communities of two tick species and blood of their shared rodent host , 2015, Molecular ecology.

[37]  J. Trape,et al.  The Recent Evolution of a Maternally-Inherited Endosymbiont of Ticks Led to the Emergence of the Q Fever Pathogen, Coxiella burnetii , 2015, PLoS pathogens.

[38]  Changqing Zeng,et al.  Metagenomic Profile of the Viral Communities in Rhipicephalus spp. Ticks from Yunnan, China , 2015, PloS one.

[39]  K. Duarte,et al.  Tick-borne infections in human and animal population worldwide , 2015, Veterinary world.

[40]  M. Shi,et al.  Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses , 2015, eLife.

[41]  Timothy P. Driscoll,et al.  A Coxiella-Like Endosymbiont Is a Potential Vitamin Source for the Lone Star Tick , 2015, Genome biology and evolution.

[42]  J. Harris,et al.  Purifying the Impure: Sequencing Metagenomes and Metatranscriptomes from Complex Animal-associated Samples , 2014, Journal of visualized experiments : JoVE.

[43]  F. Fenollar,et al.  Looking in ticks for human bacterial pathogens. , 2014, Microbial pathogenesis.

[44]  Zhen Lin,et al.  Microbial Contamination in Next Generation Sequencing: Implications for Sequence-Based Analysis of Clinical Samples , 2014, PLoS pathogens.

[45]  H. Agaisse,et al.  Antivirulence properties of an antifreeze protein. , 2014, Cell reports.

[46]  Hai-Jun Xu,et al.  The composition and transmission of microbiome in hard tick, Ixodes persulcatus, during blood meal. , 2014, Ticks and tick-borne diseases.

[47]  C. Sugimoto,et al.  Microbial Population Analysis of the Salivary Glands of Ticks; A Possible Strategy for the Surveillance of Bacterial Pathogens , 2014, PloS one.

[48]  M. Sanchez Leon,et al.  Virome Analysis of Amblyomma americanum, Dermacentor variabilis, and Ixodes scapularis Ticks Reveals Novel Highly Divergent Vertebrate and Invertebrate Viruses , 2014, Journal of Virology.

[49]  Lori Rowe,et al.  Characterization of the Bacterial Communities of Life Stages of Free Living Lone Star Ticks (Amblyomma americanum) , 2014, PloS one.

[50]  Toshimichi Ikemura,et al.  A novel approach, based on BLSOMs (Batch Learning Self-Organizing Maps), to the microbiome analysis of ticks , 2014, The ISME Journal.

[51]  M. Koopmans,et al.  Tick-Borne Pathogen – Reversed and Conventional Discovery of Disease , 2014, Front. Public Health.

[52]  S. Ishaq,et al.  Design and Validation of Four New Primers for Next-Generation Sequencing To Target the 18S rRNA Genes of Gastrointestinal Ciliate Protozoa , 2014, Applied and Environmental Microbiology.

[53]  Christian von Mering,et al.  Ecological Consistency of SSU rRNA-Based Operational Taxonomic Units at a Global Scale , 2014, PLoS Comput. Biol..

[54]  Marc Eloit,et al.  The diagnosis of infectious diseases by whole genome next generation sequencing: a new era is opening , 2014, Front. Cell. Infect. Microbiol..

[55]  S. Dowd,et al.  An Insight Into the Microbiome of the Amblyomma maculatum (Acari: Ixodidae) , 2014, Journal of medical entomology.

[56]  E. Fikrig,et al.  Gut microbiota of the tick vector Ixodes scapularis modulate colonization of the Lyme disease spirochete. , 2014, Cell host & microbe.

[57]  M. Vayssier-Taussat,et al.  Next Generation Sequencing Uncovers Unexpected Bacterial Pathogens in Ticks in Western Europe , 2013, PloS one.

[58]  J. Ribeiro,et al.  Knockdown of Selenocysteine-Specific Elongation Factor in Amblyomma maculatum Alters the Pathogen Burden of Rickettsia parkeri with Epigenetic Control by the Sin3 Histone Deacetylase Corepressor Complex , 2013, PloS one.

[59]  Sophie J. Weiss,et al.  Diversity of Rickettsiales in the Microbiome of the Lone Star Tick, Amblyomma americanum , 2013, Applied and Environmental Microbiology.

[60]  M. Bray,et al.  Crimean-Congo hemorrhagic fever: history, epidemiology, pathogenesis, clinical syndrome and genetic diversity. , 2013, Antiviral research.

[61]  Md. Nur Hossain,et al.  Nucleic acid amplification: Alternative methods of polymerase chain reaction , 2013, Journal of pharmacy & bioallied sciences.

[62]  J. de la Fuente,et al.  Interaction of the tick immune system with transmitted pathogens , 2013, Front. Cell. Infect. Microbiol..

[63]  David K. Visi,et al.  Preliminary Assessment of Microbiome Changes Following Blood-Feeding and Survivorship in the Amblyomma americanum Nymph-to-Adult Transition using Semiconductor Sequencing , 2013, PloS one.

[64]  Stephen J. Salipante,et al.  Rapid 16S rRNA Next-Generation Sequencing of Polymicrobial Clinical Samples for Diagnosis of Complex Bacterial Infections , 2013, PloS one.

[65]  H. Commandeur,et al.  Risk in Vaccine Research and Development Quantified , 2013, PloS one.

[66]  L. Grubhoffer,et al.  Hard ticks and their bacterial endosymbionts (or would be pathogens) , 2013, Folia Microbiologica.

[67]  C. Fuqua,et al.  The arthropod, but not the vertebrate host or its environment, dictates bacterial community composition of fleas and ticks , 2012, The ISME Journal.

[68]  B. Klempa,et al.  Non-viraemic transmission of tick-borne viruses. , 2013, Acta virologica.

[69]  M. Lleo,et al.  Virulence genes and pathogenicity islands in environmental Vibrio strains nonpathogenic to humans. , 2012, FEMS microbiology ecology.

[70]  M. Holbrook,et al.  Kyasanur forest disease , 2017 .

[71]  D. Otranto,et al.  Ticks and tick-borne diseases: a One Health perspective. , 2012, Trends in parasitology.

[72]  Jonathan A. Eisen,et al.  Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance , 2012, PLoS Comput. Biol..

[73]  G. Hickling,et al.  Beyond Lyme: Aetiology of Tick‐borne Human Diseases with Emphasis on the South‐Eastern United States , 2012, Zoonoses and public health.

[74]  A. Berlec.  Novel techniques and findings in the study of plant microbiota: search for plant probiotics. , 2012, Plant science : an international journal of experimental plant biology.

[75]  A. Marcili,et al.  Coxiella symbiont in the tick Ornithodoros rostratus (Acari: Argasidae). , 2012, Ticks and tick-borne diseases.

[76]  Haruo Watanabe,et al.  A novel relapsing fever Borrelia sp. infects the salivary glands of the molted hard tick, Amblyomma geoemydae. , 2012, Ticks and tick-borne diseases.

[77]  A. MacNeil,et al.  A new phlebovirus associated with severe febrile illness in Missouri. , 2012, The New England journal of medicine.

[78]  Rob Knight,et al.  Defining the human microbiome. , 2012, Nutrition reviews.

[79]  George M. Weinstock,et al.  Sequence Analysis of the Human Virome in Febrile and Afebrile Children , 2012, PloS one.

[80]  J. Nicholson,et al.  Host-Gut Microbiota Metabolic Interactions , 2012, Science.

[81]  C. Decker,et al.  Other tick-borne illnesses: tularemia, Colorado tick fever, tick paralysis. , 2012, Disease-a-month : DM.

[82]  K. Mumcuoglu,et al.  Composition and Seasonal Variation of Rhipicephalus turanicus and Rhipicephalus sanguineus Bacterial Communities , 2012, Applied and Environmental Microbiology.

[83]  A. Bouju-Albert,et al.  Detection of Wolbachia in the Tick Ixodes ricinus is Due to the Presence of the Hymenoptera Endoparasitoid Ixodiphagus hookeri , 2012, PloS one.

[84]  Xiaoyu Wang,et al.  A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis , 2012, Briefings Bioinform..

[85]  D. Otranto,et al.  On a Cercopithifilaria sp. transmitted by Rhipicephalus sanguineus: a neglected, but widespread filarioid of dogs , 2012, Parasites & Vectors.

[86]  P. J. van der Zaag,et al.  Targeted enrichment of genomic DNA regions for next-generation sequencing , 2011, Briefings in functional genomics.

[87]  L. Tomsho,et al.  Metagenomic Profile of the Bacterial Communities Associated with Ixodes ricinus Ticks , 2011, PloS one.

[88]  S. Reid,et al.  Vector of Trypanosoma copemani identified as Ixodes sp. , 2011, Parasitology.

[89]  Weizhong Yang,et al.  Fever with thrombocytopenia associated with a novel bunyavirus in China. , 2011, The New England journal of medicine.

[90]  A. Tuininga,et al.  Occurrence of Soil- and Tick-Borne Fungi and Related Virulence Tests for Pathogenicity to Ixodes scapularis (Acari: Ixodidae) , 2011, Journal of medical entomology.

[91]  Jinzhong Lin,et al.  Structural diversity of eukaryotic 18S rRNA and its impact on alignment and phylogenetic reconstruction , 2011, Protein & Cell.

[92]  T. Fennell,et al.  Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries , 2011, Genome Biology.

[93]  F. Guerrero,et al.  Assessment of bacterial diversity in the cattle tick Rhipicephalus (Boophilus) microplus through tag-encoded pyrosequencing , 2011, BMC Microbiology.

[94]  Marcus J. Claesson,et al.  Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions , 2010, Nucleic acids research.

[95]  P. Fournier,et al.  Isolation of Rickettsia parkeri and Identification of a Novel Spotted Fever Group Rickettsia sp. from Gulf Coast Ticks (Amblyomma maculatum) in the United States , 2010, Applied and Environmental Microbiology.

[96]  M. Elshahed,et al.  Bacterial Diversity in Amblyomma americanum (Acari: Ixodidae) with a Focus on Members of the Genus Rickettsia , 2010, Journal of medical entomology.

[97]  G. Wormser,et al.  Bartonella spp. Transmission by Ticks Not Established , 2010, Emerging infectious diseases.

[98]  Lu Wang,et al.  The NIH Human Microbiome Project. , 2009, Genome research.

[99]  J. Bunge,et al.  Polymerase chain reaction primers miss half of rRNA microbial diversity , 2009, The ISME Journal.

[100]  M. Nadkarni,et al.  Methods for optimizing DNA extraction before quantifying oral bacterial numbers by real-time PCR. , 2009, FEMS microbiology letters.

[101]  K. Reinhardt,et al.  Bacteriolytic Activity in the Ejaculate of an Insect , 2009, The American Naturalist.

[102]  S. Jarman,et al.  Blocking primers to enhance PCR amplification of rare sequences in mixed samples – a case study on prey DNA in Antarctic krill stomachs , 2008, Frontiers in Zoology.

[103]  J. de la Fuente,et al.  Overview: Ticks as vectors of pathogens that cause disease in humans and animals. , 2008, Frontiers in bioscience : a journal and virtual library.

[104]  T. De Meeûs,et al.  Competitive Exclusion between Piroplasmosis and Anaplasmosis Agents within Cattle , 2008, PLoS pathogens.

[105]  J. Valenzuela,et al.  Exploring the mialome of ticks: an annotated catalogue of midgut transcripts from the hard tick, Dermacentor variabilis (Acari: Ixodidae) , 2008, BMC Genomics.

[106]  J. de la Fuente,et al.  Functional genomic studies of tick cells in response to infection with the cattle pathogen, Anaplasma marginale. , 2007, Genomics.

[107]  C. Fuqua,et al.  Localization and Visualization of a Coxiella-Type Symbiont within the Lone Star Tick, Amblyomma americanum , 2007, Applied and Environmental Microbiology.

[108]  B. Sukumaran,et al.  A tick antioxidant facilitates the Lyme disease agent's successful migration from the mammalian host to the arthropod vector. , 2007, Cell host & microbe.

[109]  A. Barbour,et al.  Antibiotic Treatment of the Tick Vector Amblyomma americanum Reduced Reproductive Fitness , 2007, PloS one.

[110]  D. Alland,et al.  A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria. , 2007, Journal of microbiological methods.

[111]  R. Knight,et al.  Quantitative and Qualitative β Diversity Measures Lead to Different Insights into Factors That Structure Microbial Communities , 2007, Applied and Environmental Microbiology.

[112]  S. Ghosha,et al.  Upcoming and future strategies of tick control : a review , 2007 .

[113]  R. Knight,et al.  UniFrac: a New Phylogenetic Method for Comparing Microbial Communities , 2005, Applied and Environmental Microbiology.

[114]  I. Wilson,et al.  Gut microorganisms, mammalian metabolism and personalized health care , 2005, Nature Reviews Microbiology.

[115]  J. Clarridge,et al.  Impact of 16S rRNA Gene Sequence Analysis for Identification of Bacteria on Clinical Microbiology and Infectious Diseases , 2004, Clinical Microbiology Reviews.

[116]  F. Jongejan,et al.  The global importance of ticks , 2004, Parasitology.

[117]  G. Scoles.  Phylogenetic Analysis of the Francisella-like Endosymbionts of Dermacentor Ticks , 2004, Journal of medical entomology.

[118]  N. Lo,et al.  A symbiont of the tick Ixodes ricinus invades and consumes mitochondria in a mode similar to that of the parasitic bacterium Bdellovibrio bacteriovorus. , 2004, Tissue & cell.

[119]  J. Gray.  Review The ecology of ticks transmitting Lyme borreliosis , 1998, Experimental & Applied Acarology.

[120]  Grigor'eva La.  [Morphofunctional changes in the midgut of virgin tick females of the genus ixodes (Acarina: Ixodidae) during and after feeding]. , 2003 .

[121]  L. A. Grigor'eva.  [Morphofunctional changes in the midgut of tick females of the genus Ixodes (Acari: Ixodidae) during and after feeding]. , 2003, Parazitologiia.

[122]  D. Raoult,et al.  Rickettsioses as paradigms of new or emerging infectious diseases , 1997, Clinical microbiology reviews.

[123]  H. Noda,et al.  Endosymbionts of ticks and their relationship to Wolbachia spp. and tick-borne pathogens of humans and animals , 1997, Applied and environmental microbiology.

[124]  E. Fikrig,et al.  Growth and migration of Borrelia burgdorferi in Ixodes ticks during blood feeding. , 1995, The American journal of tropical medicine and hygiene.

[125]  J Hacker,et al.  Deletions of chromosomal regions coding for fimbriae and hemolysins occur in vitro and in vivo in various extraintestinal Escherichia coli isolates. , 1990, Microbial pathogenesis.

[126]  R. Dallai,et al.  Virus- and rickettsia-infected sperm cells in arthropods , 1989 .

[127]  J Hacker,et al.  Large, unstable inserts in the chromosome affect virulence properties of uropathogenic Escherichia coli O6 strain 536 , 1986, Journal of bacteriology.

[128]  R. Whittaker.  Evolution and measurement of species diversity , 1972 .